Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4843

Experiment: epiphytic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4842 and Psyr_4843 are separated by 21 nucleotidesPsyr_4843 and Psyr_4844 are separated by 142 nucleotidesPsyr_4844 and Psyr_4845 are separated by 13 nucleotides Psyr_4842: Psyr_4842 - Phosphoenolpyruvate-protein phosphotransferase, at 5,747,721 to 5,750,000 _4842 Psyr_4843: Psyr_4843 - NUDIX hydrolase, at 5,750,022 to 5,750,501 _4843 Psyr_4844: Psyr_4844 - HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2, at 5,750,644 to 5,751,300 _4844 Psyr_4845: Psyr_4845 - conserved hypothetical protein, at 5,751,314 to 5,751,742 _4845 Position (kb) 5750 5751Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5749.057 kb on + strand, within Psyr_4842at 5749.058 kb on - strand, within Psyr_4842at 5749.058 kb on - strand, within Psyr_4842at 5749.111 kb on + strand, within Psyr_4842at 5749.112 kb on - strand, within Psyr_4842at 5749.112 kb on - strand, within Psyr_4842at 5749.112 kb on - strand, within Psyr_4842at 5749.112 kb on - strand, within Psyr_4842at 5749.112 kb on - strand, within Psyr_4842at 5749.112 kb on - strand, within Psyr_4842at 5749.246 kb on + strand, within Psyr_4842at 5749.246 kb on + strand, within Psyr_4842at 5749.247 kb on - strand, within Psyr_4842at 5749.247 kb on - strand, within Psyr_4842at 5749.630 kb on - strand, within Psyr_4842at 5749.630 kb on - strand, within Psyr_4842at 5749.708 kb on + strand, within Psyr_4842at 5749.879 kb on + strandat 5749.880 kb on - strandat 5749.928 kb on + strandat 5749.965 kb on - strandat 5749.965 kb on - strandat 5749.991 kb on + strandat 5749.992 kb on - strandat 5750.035 kb on - strandat 5750.117 kb on - strand, within Psyr_4843at 5750.301 kb on + strand, within Psyr_4843at 5750.301 kb on + strand, within Psyr_4843at 5750.301 kb on + strand, within Psyr_4843at 5750.301 kb on + strand, within Psyr_4843at 5750.301 kb on + strand, within Psyr_4843at 5750.301 kb on + strand, within Psyr_4843at 5750.301 kb on + strand, within Psyr_4843at 5750.301 kb on + strand, within Psyr_4843at 5750.301 kb on + strand, within Psyr_4843at 5750.301 kb on + strand, within Psyr_4843at 5750.301 kb on + strand, within Psyr_4843at 5750.301 kb on + strand, within Psyr_4843at 5750.302 kb on - strand, within Psyr_4843at 5750.302 kb on - strand, within Psyr_4843at 5750.302 kb on - strand, within Psyr_4843at 5750.462 kb on + strandat 5750.462 kb on + strandat 5750.462 kb on + strandat 5750.462 kb on + strandat 5750.474 kb on + strandat 5750.474 kb on + strandat 5750.569 kb on + strandat 5750.569 kb on + strandat 5750.570 kb on - strandat 5750.577 kb on + strandat 5750.577 kb on + strandat 5750.577 kb on + strandat 5750.577 kb on + strandat 5750.577 kb on + strandat 5750.577 kb on + strandat 5750.577 kb on + strandat 5750.577 kb on + strandat 5750.577 kb on + strandat 5750.578 kb on - strandat 5750.578 kb on - strandat 5750.578 kb on - strandat 5750.578 kb on - strandat 5750.578 kb on - strandat 5750.625 kb on + strandat 5750.626 kb on - strandat 5750.626 kb on - strandat 5750.626 kb on - strandat 5750.626 kb on - strandat 5750.637 kb on + strandat 5750.638 kb on - strandat 5750.643 kb on + strandat 5750.657 kb on + strandat 5750.658 kb on - strandat 5750.658 kb on - strandat 5750.713 kb on + strand, within Psyr_4844at 5750.713 kb on + strand, within Psyr_4844at 5750.750 kb on - strand, within Psyr_4844at 5750.773 kb on + strand, within Psyr_4844at 5750.774 kb on - strand, within Psyr_4844at 5750.774 kb on - strand, within Psyr_4844at 5750.782 kb on + strand, within Psyr_4844at 5750.783 kb on - strand, within Psyr_4844at 5750.783 kb on - strand, within Psyr_4844at 5751.003 kb on + strand, within Psyr_4844at 5751.003 kb on + strand, within Psyr_4844at 5751.003 kb on + strand, within Psyr_4844at 5751.003 kb on + strand, within Psyr_4844at 5751.003 kb on + strand, within Psyr_4844at 5751.003 kb on + strand, within Psyr_4844at 5751.004 kb on - strand, within Psyr_4844at 5751.004 kb on - strand, within Psyr_4844at 5751.004 kb on - strand, within Psyr_4844at 5751.166 kb on + strand, within Psyr_4844at 5751.166 kb on + strand, within Psyr_4844at 5751.166 kb on + strand, within Psyr_4844at 5751.166 kb on + strand, within Psyr_4844at 5751.166 kb on + strand, within Psyr_4844at 5751.166 kb on + strand, within Psyr_4844at 5751.166 kb on + strand, within Psyr_4844at 5751.166 kb on + strand, within Psyr_4844at 5751.166 kb on + strand, within Psyr_4844at 5751.166 kb on + strand, within Psyr_4844at 5751.167 kb on - strand, within Psyr_4844at 5751.167 kb on - strand, within Psyr_4844at 5751.167 kb on - strand, within Psyr_4844at 5751.167 kb on - strand, within Psyr_4844at 5751.167 kb on - strand, within Psyr_4844at 5751.167 kb on - strand, within Psyr_4844at 5751.167 kb on - strand, within Psyr_4844at 5751.167 kb on - strand, within Psyr_4844at 5751.167 kb on - strand, within Psyr_4844at 5751.167 kb on - strand, within Psyr_4844at 5751.167 kb on - strand, within Psyr_4844at 5751.167 kb on - strand, within Psyr_4844at 5751.243 kb on + strandat 5751.285 kb on + strandat 5751.285 kb on + strandat 5751.286 kb on - strandat 5751.311 kb on + strandat 5751.312 kb on - strandat 5751.312 kb on - strandat 5751.312 kb on - strandat 5751.474 kb on + strandat 5751.475 kb on - strand, within Psyr_4845at 5751.475 kb on - strand, within Psyr_4845

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Lima bean
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5,749,057 + Psyr_4842 0.59 -3.4
5,749,058 - Psyr_4842 0.59 -1.3
5,749,058 - Psyr_4842 0.59 +1.9
5,749,111 + Psyr_4842 0.61 -1.5
5,749,112 - Psyr_4842 0.61 -0.1
5,749,112 - Psyr_4842 0.61 -1.5
5,749,112 - Psyr_4842 0.61 +3.3
5,749,112 - Psyr_4842 0.61 +0.2
5,749,112 - Psyr_4842 0.61 -1.5
5,749,112 - Psyr_4842 0.61 +0.6
5,749,246 + Psyr_4842 0.67 +2.3
5,749,246 + Psyr_4842 0.67 -2.2
5,749,247 - Psyr_4842 0.67 +0.1
5,749,247 - Psyr_4842 0.67 -0.4
5,749,630 - Psyr_4842 0.84 +0.1
5,749,630 - Psyr_4842 0.84 -1.0
5,749,708 + Psyr_4842 0.87 -1.1
5,749,879 + -2.2
5,749,880 - +0.7
5,749,928 + -1.7
5,749,965 - -3.4
5,749,965 - -0.5
5,749,991 + -0.3
5,749,992 - +1.4
5,750,035 - +1.3
5,750,117 - Psyr_4843 0.20 -1.3
5,750,301 + Psyr_4843 0.58 -0.4
5,750,301 + Psyr_4843 0.58 -2.2
5,750,301 + Psyr_4843 0.58 -2.5
5,750,301 + Psyr_4843 0.58 +0.7
5,750,301 + Psyr_4843 0.58 -0.5
5,750,301 + Psyr_4843 0.58 -1.2
5,750,301 + Psyr_4843 0.58 -1.3
5,750,301 + Psyr_4843 0.58 -1.1
5,750,301 + Psyr_4843 0.58 -0.3
5,750,301 + Psyr_4843 0.58 -0.3
5,750,301 + Psyr_4843 0.58 -1.8
5,750,301 + Psyr_4843 0.58 +0.1
5,750,302 - Psyr_4843 0.58 -0.0
5,750,302 - Psyr_4843 0.58 +0.7
5,750,302 - Psyr_4843 0.58 -1.9
5,750,462 + -1.9
5,750,462 + -0.6
5,750,462 + -2.3
5,750,462 + -3.1
5,750,474 + -0.4
5,750,474 + -2.1
5,750,569 + +0.2
5,750,569 + -0.0
5,750,570 - -1.3
5,750,577 + -0.5
5,750,577 + -0.3
5,750,577 + -1.6
5,750,577 + +0.2
5,750,577 + +0.2
5,750,577 + +1.0
5,750,577 + -1.7
5,750,577 + -0.4
5,750,577 + +2.2
5,750,578 - +0.4
5,750,578 - -1.0
5,750,578 - +0.3
5,750,578 - +1.2
5,750,578 - -2.4
5,750,625 + +0.7
5,750,626 - -1.5
5,750,626 - -2.4
5,750,626 - +0.1
5,750,626 - -3.2
5,750,637 + +0.5
5,750,638 - -1.8
5,750,643 + -1.9
5,750,657 + -0.7
5,750,658 - +1.9
5,750,658 - +0.9
5,750,713 + Psyr_4844 0.11 -4.0
5,750,713 + Psyr_4844 0.11 -2.7
5,750,750 - Psyr_4844 0.16 -0.7
5,750,773 + Psyr_4844 0.20 -1.5
5,750,774 - Psyr_4844 0.20 -1.1
5,750,774 - Psyr_4844 0.20 -0.6
5,750,782 + Psyr_4844 0.21 -1.8
5,750,783 - Psyr_4844 0.21 -2.9
5,750,783 - Psyr_4844 0.21 +0.3
5,751,003 + Psyr_4844 0.55 -0.2
5,751,003 + Psyr_4844 0.55 -1.9
5,751,003 + Psyr_4844 0.55 +1.1
5,751,003 + Psyr_4844 0.55 +1.3
5,751,003 + Psyr_4844 0.55 -3.9
5,751,003 + Psyr_4844 0.55 +0.5
5,751,004 - Psyr_4844 0.55 -2.2
5,751,004 - Psyr_4844 0.55 -1.1
5,751,004 - Psyr_4844 0.55 -2.8
5,751,166 + Psyr_4844 0.79 -1.7
5,751,166 + Psyr_4844 0.79 -3.5
5,751,166 + Psyr_4844 0.79 -2.6
5,751,166 + Psyr_4844 0.79 +0.1
5,751,166 + Psyr_4844 0.79 -2.8
5,751,166 + Psyr_4844 0.79 -0.7
5,751,166 + Psyr_4844 0.79 -2.2
5,751,166 + Psyr_4844 0.79 -0.0
5,751,166 + Psyr_4844 0.79 -1.9
5,751,166 + Psyr_4844 0.79 +1.3
5,751,167 - Psyr_4844 0.80 -0.7
5,751,167 - Psyr_4844 0.80 -0.0
5,751,167 - Psyr_4844 0.80 -3.4
5,751,167 - Psyr_4844 0.80 -3.6
5,751,167 - Psyr_4844 0.80 -2.3
5,751,167 - Psyr_4844 0.80 -1.2
5,751,167 - Psyr_4844 0.80 +0.1
5,751,167 - Psyr_4844 0.80 -1.8
5,751,167 - Psyr_4844 0.80 -3.2
5,751,167 - Psyr_4844 0.80 -2.1
5,751,167 - Psyr_4844 0.80 -3.0
5,751,167 - Psyr_4844 0.80 -1.3
5,751,243 + -1.4
5,751,285 + -0.7
5,751,285 + -1.9
5,751,286 - -0.3
5,751,311 + +0.4
5,751,312 - +1.3
5,751,312 - -1.7
5,751,312 - +0.3
5,751,474 + +0.7
5,751,475 - Psyr_4845 0.38 -2.3
5,751,475 - Psyr_4845 0.38 +0.1

Or see this region's nucleotide sequence