Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4032

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
4,801,034	-				-2.8
4,801,041	-				+1.4
4,801,077	+				-1.2
4,801,078	-				-1.7
4,801,220	+				-2.5
4,801,220	+				+1.6
4,801,221	-				+2.2
4,801,221	-				+1.3
4,801,221	-				+0.2
4,801,222	+				-1.8
4,801,222	+				-1.2
4,801,222	+				+0.8
4,801,222	+				-0.2
4,801,222	+				-0.9
4,801,222	+				+0.5
4,801,222	+				-1.6
4,801,222	+				+2.5
4,801,222	+				-1.1
4,801,222	+				-1.3
4,801,222	+				-0.2
4,801,222	+				+1.0
4,801,222	+				+0.8
4,801,222	+				+1.1
4,801,222	+				-3.9
4,801,222	+				-2.8
4,801,222	+				+2.3
4,801,223	-				-0.5
4,801,223	-				-1.8
4,801,223	-				-1.6
4,801,223	-				+0.6
4,801,223	-				+3.4
4,801,223	-				+1.0
4,801,223	-				+0.6
4,801,223	-				+0.0
4,801,223	-				+1.5
4,801,223	-				-0.4
4,801,223	-				+1.4
4,801,223	-				-2.3
4,801,223	-				+1.1
4,801,223	-				-2.2
4,801,271	+				+0.3
4,801,275	-				+1.9
4,801,329	-				-1.6
4,801,340	+				+0.6
4,801,340	+				-2.3
4,801,341	-				-0.2
4,801,400	-				-0.7
4,801,429	+				+1.7
4,801,429	+				+1.3
4,801,430	-				+1.3
4,801,430	-				-0.6
4,801,611	+				-1.8
4,801,622	-		Psyr_4032	0.10	-1.0
4,801,669	+		Psyr_4032	0.12	-2.7
4,801,670	-		Psyr_4032	0.12	+1.8
4,801,670	-		Psyr_4032	0.12	+1.1
4,801,670	-		Psyr_4032	0.12	+1.4
4,801,670	-		Psyr_4032	0.12	-2.5
4,801,671	+		Psyr_4032	0.12	+0.1
4,801,672	-		Psyr_4032	0.12	+0.7
4,801,805	-		Psyr_4032	0.17	+3.4
4,801,880	-		Psyr_4032	0.20	-0.9
4,801,893	+		Psyr_4032	0.20	-1.4
4,801,912	+		Psyr_4032	0.21	+0.2
4,801,912	+		Psyr_4032	0.21	+0.6
4,801,913	-		Psyr_4032	0.21	+1.7
4,801,913	-		Psyr_4032	0.21	+0.9
4,801,995	-		Psyr_4032	0.24	-0.0
4,802,035	-		Psyr_4032	0.25	+0.3
4,802,035	-		Psyr_4032	0.25	-1.1
4,802,071	-		Psyr_4032	0.26	-0.0
4,802,180	+		Psyr_4032	0.30	+0.6
4,802,249	+		Psyr_4032	0.33	+1.1
4,802,250	-		Psyr_4032	0.33	-1.9
4,802,264	+		Psyr_4032	0.33	-2.3
4,802,326	+		Psyr_4032	0.36	+3.4
4,802,327	-		Psyr_4032	0.36	+0.1
4,802,373	-		Psyr_4032	0.37	-1.2
4,802,448	-		Psyr_4032	0.40	-0.6
4,802,529	+		Psyr_4032	0.43	+2.3
4,802,529	+		Psyr_4032	0.43	+0.1
4,802,530	-		Psyr_4032	0.43	-1.9
4,802,532	+		Psyr_4032	0.43	+0.4
4,802,532	+		Psyr_4032	0.43	+0.5
4,802,533	-		Psyr_4032	0.43	-1.8
4,802,533	-		Psyr_4032	0.43	-0.9
4,802,588	+		Psyr_4032	0.45	+3.0
4,802,589	-		Psyr_4032	0.45	+0.2
4,802,666	+		Psyr_4032	0.48	+3.2
4,802,666	+		Psyr_4032	0.48	-0.9
4,802,666	+		Psyr_4032	0.48	-2.0
4,802,666	+		Psyr_4032	0.48	-0.1
4,802,666	+		Psyr_4032	0.48	-3.4
4,802,666	+		Psyr_4032	0.48	+0.4
4,802,666	+		Psyr_4032	0.48	+2.6
4,802,667	-		Psyr_4032	0.48	+0.4
4,802,667	-		Psyr_4032	0.48	+0.1
4,802,667	-		Psyr_4032	0.48	-0.3
4,802,667	-		Psyr_4032	0.48	+0.9
4,802,667	-		Psyr_4032	0.48	+0.3
4,802,670	+		Psyr_4032	0.48	-1.9
4,802,670	+		Psyr_4032	0.48	+2.5
4,802,670	+		Psyr_4032	0.48	+0.6
4,802,670	+		Psyr_4032	0.48	+3.9
4,802,670	+		Psyr_4032	0.48	-0.2
4,802,670	+		Psyr_4032	0.48	+0.3
4,802,670	+		Psyr_4032	0.48	+1.0
4,802,670	+		Psyr_4032	0.48	+0.5
4,802,670	+		Psyr_4032	0.48	-0.4
4,802,670	+		Psyr_4032	0.48	+1.4
4,802,670	+		Psyr_4032	0.48	-0.2
4,802,671	-		Psyr_4032	0.48	+1.2
4,802,671	-		Psyr_4032	0.48	-0.4
4,802,671	-		Psyr_4032	0.48	+0.8
4,802,671	-		Psyr_4032	0.48	+0.7
4,802,671	-		Psyr_4032	0.48	+1.9
4,802,671	-		Psyr_4032	0.48	+2.1
4,802,671	-		Psyr_4032	0.48	+1.2
4,802,671	-		Psyr_4032	0.48	+1.0
4,802,672	+		Psyr_4032	0.48	-0.4
4,802,672	+		Psyr_4032	0.48	-1.5
4,802,672	+		Psyr_4032	0.48	-0.0
4,802,673	-		Psyr_4032	0.48	-0.2
4,802,673	-		Psyr_4032	0.48	-0.6
4,802,673	-		Psyr_4032	0.48	+0.4
4,802,673	-		Psyr_4032	0.48	-2.0
4,802,673	-		Psyr_4032	0.48	+1.8
4,802,673	-		Psyr_4032	0.48	-0.7
4,802,673	-		Psyr_4032	0.48	+1.3
4,802,673	-		Psyr_4032	0.48	-0.0
4,802,673	-		Psyr_4032	0.48	-1.3
4,802,733	+		Psyr_4032	0.50	-1.2
4,802,945	+		Psyr_4032	0.58	+2.3
4,802,945	+		Psyr_4032	0.58	-2.0
4,802,945	+		Psyr_4032	0.58	-0.5
4,802,945	+		Psyr_4032	0.58	+0.8
4,802,945	+		Psyr_4032	0.58	+0.1
4,802,945	+		Psyr_4032	0.58	-0.1
4,802,945	+		Psyr_4032	0.58	+2.2
4,802,945	+		Psyr_4032	0.58	-0.5
4,802,946	-		Psyr_4032	0.58	-0.4
4,802,946	-		Psyr_4032	0.58	-1.2
4,802,946	-		Psyr_4032	0.58	-0.7
4,802,946	-		Psyr_4032	0.58	+1.0
4,802,946	-		Psyr_4032	0.58	-0.5
4,803,056	+		Psyr_4032	0.62	-1.8
4,803,056	+		Psyr_4032	0.62	+0.7
4,803,056	+		Psyr_4032	0.62	+0.4
4,803,057	-		Psyr_4032	0.62	+2.1
4,803,068	+		Psyr_4032	0.63	+3.1
4,803,069	-		Psyr_4032	0.63	+0.7
4,803,164	+		Psyr_4032	0.66	+1.7
4,803,164	+		Psyr_4032	0.66	+0.5
4,803,164	+		Psyr_4032	0.66	-0.9
4,803,164	+		Psyr_4032	0.66	+0.7
4,803,164	+		Psyr_4032	0.66	+0.9
4,803,165	-		Psyr_4032	0.66	+3.9
4,803,165	-		Psyr_4032	0.66	+0.5
4,803,170	+		Psyr_4032	0.66	+1.2
4,803,170	+		Psyr_4032	0.66	+1.4
4,803,170	+		Psyr_4032	0.66	+0.3
4,803,170	+		Psyr_4032	0.66	-1.6
4,803,170	+		Psyr_4032	0.66	+0.5
4,803,170	+				-1.8
4,803,171	-		Psyr_4032	0.66	+1.9
4,803,171	-		Psyr_4032	0.66	+1.4
4,803,171	-		Psyr_4032	0.66	+2.0
4,803,245	+		Psyr_4032	0.69	-1.2
4,803,308	+		Psyr_4032	0.71	-0.6
4,803,408	+		Psyr_4032	0.75	+2.2
4,803,409	-		Psyr_4032	0.75	+1.5
4,803,409	-		Psyr_4032	0.75	+0.5
4,803,587	+		Psyr_4032	0.81	+1.8
4,803,648	+		Psyr_4032	0.84	+0.3
4,803,674	+		Psyr_4032	0.85	+0.0
4,803,674	+		Psyr_4032	0.85	+0.7
4,803,675	-		Psyr_4032	0.85	+0.6
4,803,675	-		Psyr_4032	0.85	+0.8
4,803,737	+		Psyr_4032	0.87	-2.6
4,803,738	-		Psyr_4032	0.87	-0.7
4,804,068	+				-1.9
4,804,069	-				+0.4
4,804,116	+				-0.4
4,804,125	+				+0.3
4,804,125	+				+0.6
4,804,126	-				-0.5
4,804,181	+				-0.6
4,804,181	+				+0.0
4,804,181	+				+0.2
4,804,181	+				+0.4
4,804,181	+				+0.6
4,804,181	+				+1.9
4,804,181	+				+1.6
4,804,181	+				+0.6
4,804,182	-				-2.6
4,804,182	-				+1.9
4,804,182	-				+0.0
4,804,190	+				-1.6
4,804,191	-				-3.4
4,804,231	+				+0.2
4,804,231	+				-1.0
4,804,231	+				+0.9
4,804,231	+				+1.3
4,804,232	-				+0.6
4,804,232	-				-3.1
4,804,232	-				-3.3
4,804,232	-				-2.8
4,804,232	-				-0.6
4,804,232	-				+1.6
4,804,232	-				-2.0
4,804,235	+				+0.2
4,804,235	+				-2.2
4,804,235	+				-0.9
4,804,235	+				+0.7
4,804,235	+				-0.1
4,804,235	+				-0.6
4,804,236	-				-0.7
4,804,240	+				+1.8
4,804,241	-				+0.9
4,804,241	-				-0.0
4,804,241	-				-1.4
4,804,241	-				+0.9
4,804,307	+				-0.6
4,804,308	-				+1.7
4,804,308	-				+0.6
4,804,316	+				+0.4
4,804,404	+				+0.5
4,804,404	+				-1.9
4,804,405	-				-2.6
4,804,405	-				-1.1
4,804,443	-				+1.2
4,804,458	+				-0.9
4,804,504	-				+1.9
4,804,504	-				+0.9
4,804,543	-		Psyr_4033	0.11	-2.2
4,804,583	+		Psyr_4033	0.13	+0.3
4,804,583	+		Psyr_4033	0.13	-0.6
4,804,583	+		Psyr_4033	0.13	-0.8
4,804,583	+		Psyr_4033	0.13	-1.2
4,804,584	-		Psyr_4033	0.13	+2.8
4,804,585	+		Psyr_4033	0.13	-0.2
4,804,585	+		Psyr_4033	0.13	-1.3
4,804,585	+		Psyr_4033	0.13	+1.2
4,804,585	+		Psyr_4033	0.13	-1.4
4,804,585	+		Psyr_4033	0.13	+1.1
4,804,586	-		Psyr_4033	0.13	-2.6
4,804,586	-		Psyr_4033	0.13	+0.4
4,804,586	-		Psyr_4033	0.13	-1.5
4,804,592	-		Psyr_4033	0.13	+0.1
4,804,638	+		Psyr_4033	0.14	+1.9
4,804,690	-		Psyr_4033	0.16	-1.4
4,804,719	-		Psyr_4033	0.17	-2.8
4,804,783	+		Psyr_4033	0.20	+2.0
4,804,783	+		Psyr_4033	0.20	-2.4
4,804,784	-		Psyr_4033	0.20	+1.0
4,804,850	+		Psyr_4033	0.22	-1.3
4,804,850	+		Psyr_4033	0.22	+0.7
4,804,850	+		Psyr_4033	0.22	+0.6
4,804,850	+		Psyr_4033	0.22	+2.0
4,804,850	+		Psyr_4033	0.22	-0.4
4,804,850	+		Psyr_4033	0.22	+0.8
4,804,850	+		Psyr_4033	0.22	+1.9
4,804,850	+		Psyr_4033	0.22	-0.4
4,804,851	-		Psyr_4033	0.22	+1.7
4,804,851	-		Psyr_4033	0.22	+0.8
4,804,851	-		Psyr_4033	0.22	-0.6
4,804,851	-		Psyr_4033	0.22	+0.5
4,804,851	-		Psyr_4033	0.22	-0.9
4,804,851	-		Psyr_4033	0.22	+1.9
4,804,851	-		Psyr_4033	0.22	+1.4
4,804,851	-		Psyr_4033	0.22	-0.1
4,804,851	-		Psyr_4033	0.22	+1.4
4,804,851	-		Psyr_4033	0.22	+0.1
4,804,851	-		Psyr_4033	0.22	+0.1
4,804,851	-		Psyr_4033	0.22	+2.8
4,804,907	+		Psyr_4033	0.24	-0.2
4,804,907	+		Psyr_4033	0.24	-0.3
4,804,930	+		Psyr_4033	0.25	+1.6
4,804,930	+		Psyr_4033	0.25	-0.5
4,804,967	+		Psyr_4033	0.26	-2.9
4,804,968	-		Psyr_4033	0.26	+0.4
4,804,968	-		Psyr_4033	0.26	+1.3
4,805,074	+		Psyr_4033	0.30	+1.9
4,805,097	+		Psyr_4033	0.31	-0.6
4,805,098	-		Psyr_4033	0.31	+0.1
4,805,100	-		Psyr_4033	0.31	+0.4
4,805,100	-		Psyr_4033	0.31	+0.5