Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3572

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
4,252,793	+		Psyr_3571	0.47	+0.9
4,252,878	+		Psyr_3571	0.58	+2.8
4,252,879	-		Psyr_3571	0.59	-0.7
4,252,879	-		Psyr_3571	0.59	+0.3
4,252,879	-		Psyr_3571	0.59	+1.8
4,252,879	-		Psyr_3571	0.59	-0.0
4,252,879	-		Psyr_3571	0.59	+0.6
4,252,882	-		Psyr_3571	0.59	-2.5
4,252,882	-		Psyr_3571	0.59	-1.9
4,252,882	-		Psyr_3571	0.59	-0.3
4,252,882	-		Psyr_3571	0.59	-1.3
4,252,882	-		Psyr_3571	0.59	+2.0
4,252,976	-		Psyr_3571	0.71	+1.3
4,253,387	+				+0.5
4,253,388	-				-2.0
4,253,388	-				-0.4
4,253,462	+				+1.3
4,253,462	+				+1.1
4,253,510	+				-1.2
4,253,545	+				-0.0
4,253,571	+				-0.9
4,253,644	+				+0.1
4,253,644	+				+1.8
4,253,645	-				+0.7
4,253,646	+				+1.3
4,253,646	+				-0.0
4,253,646	+				-0.0
4,253,646	+				+1.1
4,253,646	+				-2.4
4,253,646	+				-0.2
4,253,646	+				+0.7
4,253,646	+				-1.5
4,253,646	+				-1.2
4,253,646	+				+1.4
4,253,646	+				-0.3
4,253,646	+				-1.3
4,253,646	+				-1.7
4,253,646	+				-0.7
4,253,646	+				-1.3
4,253,646	+				+1.3
4,253,646	+				+2.7
4,253,647	-				-0.9
4,253,647	-				+0.6
4,253,647	-				+0.7
4,253,647	-				-0.4
4,253,647	-				-2.2
4,253,647	-				-0.7
4,253,647	-				-0.6
4,253,647	-				-0.2
4,253,647	-				+0.6
4,253,647	-				-1.3
4,253,647	-				-0.7
4,253,647	-				-3.2
4,253,647	-				-1.2
4,253,647	-				+0.1
4,253,647	-				-2.8
4,253,647	-				+0.2
4,253,647	-				-0.3
4,253,647	-				+0.3
4,253,647	-				-0.0
4,253,647	-				-0.7
4,253,647	-				+1.6
4,253,649	-				+1.7
4,253,820	+				+1.2
4,253,821	-				-1.3
4,254,003	+		Psyr_3572	0.14	-1.4
4,254,003	+		Psyr_3572	0.14	-1.5
4,254,003	+		Psyr_3572	0.14	-0.3
4,254,003	+		Psyr_3572	0.14	+0.8
4,254,003	+		Psyr_3572	0.14	-1.0
4,254,004	-		Psyr_3572	0.14	-0.4
4,254,004	-		Psyr_3572	0.14	+0.2
4,254,004	-		Psyr_3572	0.14	+0.2
4,254,009	+		Psyr_3572	0.14	-1.3
4,254,009	+		Psyr_3572	0.14	-1.0
4,254,009	+		Psyr_3572	0.14	-1.3
4,254,009	+		Psyr_3572	0.14	+2.1
4,254,009	+		Psyr_3572	0.14	-1.0
4,254,009	+		Psyr_3572	0.14	-3.2
4,254,009	+		Psyr_3572	0.14	+0.9
4,254,009	+		Psyr_3572	0.14	-0.3
4,254,009	+		Psyr_3572	0.14	-2.2
4,254,009	+		Psyr_3572	0.14	-0.4
4,254,010	-		Psyr_3572	0.14	-2.2
4,254,010	-		Psyr_3572	0.14	+0.3
4,254,010	-		Psyr_3572	0.14	-1.4
4,254,010	-		Psyr_3572	0.14	-2.2
4,254,010	-		Psyr_3572	0.14	+1.2
4,254,010	-		Psyr_3572	0.14	-0.8
4,254,010	-		Psyr_3572	0.14	-2.2
4,254,010	-		Psyr_3572	0.14	+0.3
4,254,163	-		Psyr_3572	0.22	+0.3
4,254,201	+		Psyr_3572	0.24	-1.7
4,254,201	+		Psyr_3572	0.24	-0.6
4,254,201	+		Psyr_3572	0.24	-0.6
4,254,201	+		Psyr_3572	0.24	-2.6
4,254,201	+		Psyr_3572	0.24	-2.8
4,254,201	+		Psyr_3572	0.24	+0.3
4,254,201	+		Psyr_3572	0.24	-1.7
4,254,202	-		Psyr_3572	0.24	+0.5
4,254,202	-		Psyr_3572	0.24	+1.5
4,254,202	-		Psyr_3572	0.24	-3.7
4,254,202	-		Psyr_3572	0.24	+0.6
4,254,202	-		Psyr_3572	0.24	-0.7
4,254,202	-		Psyr_3572	0.24	-1.0
4,254,202	-		Psyr_3572	0.24	-3.7
4,254,202	-		Psyr_3572	0.24	-1.5
4,254,202	-		Psyr_3572	0.24	+2.8
4,254,225	+		Psyr_3572	0.25	+0.6
4,254,225	+		Psyr_3572	0.25	-0.4
4,254,225	+		Psyr_3572	0.25	-1.7
4,254,225	+		Psyr_3572	0.25	-1.2
4,254,225	+		Psyr_3572	0.25	+1.6
4,254,225	+		Psyr_3572	0.25	-0.3
4,254,225	+		Psyr_3572	0.25	-3.0
4,254,226	-		Psyr_3572	0.25	-0.7
4,254,492	+		Psyr_3572	0.39	-0.7
4,254,492	+		Psyr_3572	0.39	-2.3
4,254,492	+		Psyr_3572	0.39	+0.5
4,254,492	+		Psyr_3572	0.39	-1.9
4,254,492	+		Psyr_3572	0.39	+0.3
4,254,492	+		Psyr_3572	0.39	-1.5
4,254,492	+		Psyr_3572	0.39	+1.7
4,254,492	+		Psyr_3572	0.39	+0.9
4,254,495	+		Psyr_3572	0.39	+1.4
4,254,496	-		Psyr_3572	0.39	-0.7
4,254,624	+		Psyr_3572	0.46	+1.3
4,254,625	-		Psyr_3572	0.46	+0.3
4,254,625	-		Psyr_3572	0.46	-1.3
4,254,625	-		Psyr_3572	0.46	-0.0
4,254,681	+		Psyr_3572	0.49	-0.6
4,254,681	+		Psyr_3572	0.49	-2.6
4,254,736	-		Psyr_3572	0.51	+1.3
4,254,744	+		Psyr_3572	0.52	+0.3
4,254,744	+		Psyr_3572	0.52	-0.4
4,254,744	+		Psyr_3572	0.52	+0.5
4,254,744	+		Psyr_3572	0.52	+1.3
4,254,744	+		Psyr_3572	0.52	+1.2
4,254,745	-		Psyr_3572	0.52	+3.6
4,254,745	-		Psyr_3572	0.52	+0.3
4,254,745	-		Psyr_3572	0.52	-2.2
4,254,745	-		Psyr_3572	0.52	-1.7
4,254,745	-		Psyr_3572	0.52	-0.2
4,254,745	-		Psyr_3572	0.52	+0.1
4,254,745	-		Psyr_3572	0.52	-0.5
4,254,745	-		Psyr_3572	0.52	+1.8
4,254,745	-		Psyr_3572	0.52	-0.5
4,254,745	-		Psyr_3572	0.52	-1.5
4,254,745	-		Psyr_3572	0.52	-1.2
4,254,786	+		Psyr_3572	0.54	-2.2
4,254,787	-		Psyr_3572	0.54	-0.3
4,254,837	+		Psyr_3572	0.56	+1.0
4,254,846	+		Psyr_3572	0.57	-2.0
4,254,846	+		Psyr_3572	0.57	+0.5
4,254,847	-		Psyr_3572	0.57	+1.3
4,254,900	+		Psyr_3572	0.60	-0.1
4,254,900	+		Psyr_3572	0.60	-0.0
4,254,901	-		Psyr_3572	0.60	-2.9
4,254,901	-		Psyr_3572	0.60	-2.4
4,254,901	-		Psyr_3572	0.60	-1.0
4,254,901	-		Psyr_3572	0.60	+0.2
4,254,901	-		Psyr_3572	0.60	-2.6
4,254,901	-		Psyr_3572	0.60	+1.6
4,254,985	+		Psyr_3572	0.64	+1.0
4,255,275	+		Psyr_3572	0.79	+0.7
4,255,275	+		Psyr_3572	0.79	-0.2
4,255,275	+		Psyr_3572	0.79	+2.6
4,255,275	+		Psyr_3572	0.79	-1.3
4,255,275	+		Psyr_3572	0.79	+0.9
4,255,275	+		Psyr_3572	0.79	+1.6
4,255,275	+		Psyr_3572	0.79	-1.7
4,255,275	+		Psyr_3572	0.79	-2.4
4,255,275	+		Psyr_3572	0.79	-1.7
4,255,276	-		Psyr_3572	0.79	-0.7
4,255,276	-		Psyr_3572	0.79	-2.1
4,255,276	-		Psyr_3572	0.79	-3.2
4,255,276	-		Psyr_3572	0.79	+2.0
4,255,276	-		Psyr_3572	0.79	+2.2
4,255,276	-		Psyr_3572	0.79	-0.7
4,255,276	-		Psyr_3572	0.79	-2.7
4,255,276	-		Psyr_3572	0.79	-1.0
4,255,452	+		Psyr_3572	0.88	-1.0
4,255,452	+		Psyr_3572	0.88	+1.7
4,255,453	-		Psyr_3572	0.88	-0.6
4,255,453	-		Psyr_3572	0.88	+0.3
4,255,453	-		Psyr_3572	0.88	-2.8
4,255,605	+				-0.1
4,255,605	+				-1.4
4,255,605	+				-0.1
4,255,605	+				+1.0
4,255,605	+				+1.7
4,255,605	+				-0.2
4,255,606	-				+0.5
4,255,606	-				-2.8
4,255,606	-				-0.5
4,255,606	-				-3.1
4,255,606	-				-0.2
4,255,606	-				-0.1
4,255,617	+				-2.6
4,255,617	+				+1.3
4,255,617	+				+1.3
4,255,617	+				-0.7
4,255,618	-				-0.6
4,255,618	-				-2.7
4,255,618	-				-1.3
4,255,618	-				+1.4
4,255,639	+				-0.7
4,255,695	-				-0.3
4,255,706	+				-0.7
4,255,718	+				-1.3
4,255,718	+				+0.5
4,255,767	+				+0.3
4,255,767	+				-2.3
4,255,768	-				-2.0
4,255,871	-				-0.5
4,255,874	-				+1.1
4,255,884	+				+1.1
4,255,908	-				-1.3
4,255,908	-				-0.6
4,255,909	+				-0.2
4,255,909	+				-1.3
4,255,909	+				+1.8
4,255,909	+				+0.9
4,255,909	+				-2.0
4,255,909	+				+2.1
4,255,909	+				-1.0
4,255,909	+				+1.9
4,255,909	+				+1.1
4,255,909	+				+1.3
4,255,910	-				+0.4
4,255,910	-				+1.1
4,255,910	-				+0.1
4,255,910	-				+1.7
4,255,910	-				-0.2
4,255,910	-				+4.1
4,255,910	-				-1.3
4,255,910	-				+0.9
4,255,910	-				+0.3
4,255,911	+				-0.1
4,255,911	+				+0.2
4,255,911	+				+2.3
4,255,911	+				-1.2
4,255,912	-				-1.0
4,255,912	-				+0.4
4,255,912	-				-2.5
4,255,912	-				-1.5
4,255,932	+				-1.3
4,255,932	+				-2.3
4,255,932	+				+0.6
4,255,932	+				-0.3
4,255,932	+				-1.8
4,255,932	+				+1.1
4,255,932	+				+0.3
4,255,933	-				-3.0
4,255,933	-				-1.4
4,255,933	-				+1.6
4,255,933	-				-3.4
4,256,083	+				+1.0
4,256,083	+				-0.7
4,256,083	+				-1.6
4,256,084	-				-0.1
4,256,086	+				-2.3
4,256,114	+		Psyr_3573	0.15	-3.0
4,256,114	+		Psyr_3573	0.15	-2.0
4,256,178	+		Psyr_3573	0.39	+0.8
4,256,178	+		Psyr_3573	0.39	-1.3
4,256,178	+		Psyr_3573	0.39	+0.8
4,256,178	+		Psyr_3573	0.39	+1.8
4,256,179	-		Psyr_3573	0.40	-2.9
4,256,180	+		Psyr_3573	0.40	+1.8
4,256,180	+		Psyr_3573	0.40	+0.6
4,256,180	+		Psyr_3573	0.40	-2.4
4,256,180	+		Psyr_3573	0.40	+1.9
4,256,180	+		Psyr_3573	0.40	+0.3
4,256,180	+		Psyr_3573	0.40	+1.0
4,256,180	+		Psyr_3573	0.40	+0.2
4,256,180	+		Psyr_3573	0.40	+1.5
4,256,180	+		Psyr_3573	0.40	-0.7
4,256,180	+		Psyr_3573	0.40	+0.7
4,256,180	+		Psyr_3573	0.40	-0.1
4,256,180	+		Psyr_3573	0.40	+0.8
4,256,180	+		Psyr_3573	0.40	-1.5
4,256,180	+		Psyr_3573	0.40	-2.0
4,256,180	+		Psyr_3573	0.40	+1.3
4,256,180	+		Psyr_3573	0.40	+0.1
4,256,180	+		Psyr_3573	0.40	+1.0
4,256,181	-		Psyr_3573	0.40	+1.4
4,256,181	-		Psyr_3573	0.40	+2.0
4,256,181	-		Psyr_3573	0.40	+2.9
4,256,181	-		Psyr_3573	0.40	+0.3
4,256,181	-				-0.3
4,256,181	-		Psyr_3573	0.40	+1.6
4,256,181	-		Psyr_3573	0.40	-2.3
4,256,181	-		Psyr_3573	0.40	+0.3
4,256,181	-		Psyr_3573	0.40	+4.1
4,256,181	-		Psyr_3573	0.40	+1.6
4,256,181	-				-1.3
4,256,181	-		Psyr_3573	0.40	+3.1
4,256,181	-		Psyr_3573	0.40	-1.5
4,256,181	-		Psyr_3573	0.40	+2.5
4,256,181	-		Psyr_3573	0.40	+1.0
4,256,184	+		Psyr_3573	0.42	+0.1
4,256,213	+		Psyr_3573	0.52	+1.5
4,256,268	+		Psyr_3573	0.73	+1.1
4,256,268	+		Psyr_3573	0.73	+1.0
4,256,268	+		Psyr_3573	0.73	+0.1
4,256,268	+		Psyr_3573	0.73	+1.3
4,256,268	+		Psyr_3573	0.73	-0.1
4,256,268	+		Psyr_3573	0.73	+1.4
4,256,269	-		Psyr_3573	0.73	-1.5
4,256,269	-		Psyr_3573	0.73	-0.4
4,256,269	-		Psyr_3573	0.73	+1.1
4,256,269	-		Psyr_3573	0.73	+0.0
4,256,269	-		Psyr_3573	0.73	-2.6
4,256,269	-		Psyr_3573	0.73	+1.9
4,256,383	-				-0.6
4,256,394	+				-1.2
4,256,394	+				-1.5
4,256,396	+				+0.3
4,256,396	+				-1.0
4,256,396	+				+0.3
4,256,396	+				+0.7
4,256,396	+				-1.5
4,256,396	+				+3.9
4,256,396	+				+0.4
4,256,396	+				+0.6
4,256,396	+				-2.5
4,256,396	+				-0.6
4,256,396	+				+0.7
4,256,396	+				-0.3
4,256,396	+				-0.6
4,256,396	+				-1.7
4,256,397	-				-2.2
4,256,397	-				-1.8
4,256,397	-				-2.1
4,256,397	-				-1.9
4,256,397	-				-1.7
4,256,397	-				+0.3
4,256,397	-				+0.3
4,256,397	-				-2.3
4,256,397	-				+1.7
4,256,397	-				+0.2
4,256,397	-				-1.4
4,256,398	+				-0.6
4,256,398	+				+1.2
4,256,398	+				+0.5
4,256,398	+				-0.0
4,256,398	+				-0.6
4,256,398	+				-1.3
4,256,398	+				-1.4
4,256,398	+				-2.8
4,256,398	+				+0.7
4,256,398	+				+0.1
4,256,398	+				+0.8
4,256,398	+				+1.5
4,256,399	-				+1.3
4,256,399	-				+0.5
4,256,399	-				+1.6
4,256,399	-				+1.1
4,256,399	-				+1.2
4,256,399	-				-1.7
4,256,399	-				-3.3
4,256,452	-				+0.0
4,256,452	-				+2.2
4,256,494	-				+0.6
4,256,521	+				-1.5
4,256,521	+				+0.7
4,256,521	+				-1.0
4,256,521	+				+0.6
4,256,521	+				+0.4
4,256,522	-				+2.4
4,256,546	+				-0.0
4,256,546	+				+0.2
4,256,574	+				+1.5
4,256,574	+				-1.7
4,256,615	-		Psyr_3574	0.10	+2.1
4,256,684	-		Psyr_3574	0.15	+0.0