Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2846

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
3,418,591	+				-0.1
3,418,591	+				+0.0
3,418,591	+				-1.0
3,418,591	+				+0.7
3,418,591	+				-2.2
3,418,591	+				+0.3
3,418,591	+				+0.7
3,418,591	+				+0.3
3,418,591	+				+1.0
3,418,591	+				+0.9
3,418,592	-				-0.2
3,418,592	-				-2.9
3,418,592	-				+1.0
3,418,592	-				+0.4
3,418,592	-				+2.6
3,418,592	-				-1.9
3,418,592	-				-1.1
3,418,592	-				+0.2
3,418,592	-				-0.0
3,418,592	-				-0.4
3,418,592	-				-2.8
3,418,631	+				+1.3
3,418,631	+				+1.2
3,418,631	+				-0.4
3,418,827	-				-1.8
3,419,333	+				+0.4
3,419,333	+				-0.2
3,419,333	+				-0.6
3,419,337	+				-1.3
3,419,337	+				+2.4
3,419,337	+				-1.9
3,419,372	+				-0.6
3,419,372	+				-2.0
3,419,372	+				-0.8
3,419,372	+				-2.9
3,419,373	-				-2.1
3,419,373	-				+0.3
3,419,373	-				+0.8
3,419,373	-				-0.9
3,419,412	-				+0.6
3,419,412	-				+2.0
3,419,626	+				+2.6
3,419,626	+				+0.0
3,419,626	+				-1.8
3,419,629	+				+1.0
3,419,629	+				+3.0
3,419,629	+				+1.3
3,419,629	+				+0.6
3,419,629	+				-3.6
3,419,629	+				-0.4
3,419,632	+				+0.3
3,419,632	+				+0.9
3,419,632	+				-1.0
3,419,632	+				+1.3
3,419,635	+				+2.6
3,419,635	+				+0.5
3,419,635	+				+0.2
3,419,635	+				+0.0
3,419,635	+				-1.8
3,419,635	+				-2.7
3,419,635	+				+0.3
3,419,684	-		Psyr_2846	0.13	+1.8
3,419,767	+		Psyr_2846	0.21	-2.0
3,419,767	+		Psyr_2846	0.21	+0.7
3,419,767	+		Psyr_2846	0.21	-2.8
3,419,783	-		Psyr_2846	0.22	+0.3
3,419,783	-		Psyr_2846	0.22	-0.2
3,419,783	-		Psyr_2846	0.22	+1.7
3,419,783	-		Psyr_2846	0.22	-1.6
3,419,783	-		Psyr_2846	0.22	-1.3
3,419,783	-		Psyr_2846	0.22	+0.4
3,419,783	-		Psyr_2846	0.22	-2.2
3,419,783	-		Psyr_2846	0.22	+0.5
3,419,783	-		Psyr_2846	0.22	-1.1
3,419,948	+		Psyr_2846	0.38	-2.0
3,419,948	+		Psyr_2846	0.38	-2.3
3,419,982	+		Psyr_2846	0.41	-2.8
3,419,983	-		Psyr_2846	0.41	-0.1
3,419,983	-		Psyr_2846	0.41	+0.5
3,420,073	+		Psyr_2846	0.50	+0.6
3,420,073	+		Psyr_2846	0.50	+1.3
3,420,073	+		Psyr_2846	0.50	-0.2
3,420,073	+		Psyr_2846	0.50	+1.3
3,420,073	+		Psyr_2846	0.50	-2.2
3,420,073	+		Psyr_2846	0.50	-0.1
3,420,073	+		Psyr_2846	0.50	-1.8
3,420,074	-		Psyr_2846	0.50	-0.3
3,420,074	-		Psyr_2846	0.50	-1.0
3,420,074	-		Psyr_2846	0.50	+1.3
3,420,074	-		Psyr_2846	0.50	-0.7
3,420,074	-		Psyr_2846	0.50	-0.2
3,420,074	-		Psyr_2846	0.50	-2.8
3,420,074	-		Psyr_2846	0.50	+1.0
3,420,074	-		Psyr_2846	0.50	+1.4
3,420,103	+		Psyr_2846	0.53	-3.3
3,420,103	+		Psyr_2846	0.53	-0.7
3,420,143	+		Psyr_2846	0.57	+2.1
3,420,143	+		Psyr_2846	0.57	-2.7
3,420,143	+		Psyr_2846	0.57	-3.5
3,420,143	+		Psyr_2846	0.57	-1.0
3,420,143	+		Psyr_2846	0.57	+0.2
3,420,144	-		Psyr_2846	0.57	+1.0
3,420,144	-		Psyr_2846	0.57	-2.6
3,420,144	-		Psyr_2846	0.57	+0.4
3,420,144	-		Psyr_2846	0.57	+0.6
3,420,144	-		Psyr_2846	0.57	+0.0
3,420,148	+		Psyr_2846	0.57	+0.4
3,420,148	+		Psyr_2846	0.57	-2.3
3,420,148	+		Psyr_2846	0.57	-1.6
3,420,148	+		Psyr_2846	0.57	+0.1
3,420,148	+		Psyr_2846	0.57	-2.2
3,420,149	-		Psyr_2846	0.57	-2.4
3,420,201	-		Psyr_2846	0.63	-1.6
3,420,201	-		Psyr_2846	0.63	+1.8
3,420,201	-				+0.0
3,420,373	-		Psyr_2846	0.79	+0.3
3,420,373	-		Psyr_2846	0.79	+0.4
3,420,373	-		Psyr_2846	0.79	-1.2
3,420,373	-		Psyr_2846	0.79	+0.9
3,420,765	+				-1.2
3,420,765	+				-0.8
3,420,765	+				+1.1
3,420,765	+				+2.7
3,420,765	+				-2.0
3,420,765	+				-2.0
3,420,765	+				+0.0
3,420,765	+				-1.3
3,420,765	+				-0.3
3,420,765	+				+0.0
3,420,765	+				+0.9
3,420,765	+				+0.7
3,420,765	+				-0.3
3,420,765	+				+0.9
3,420,765	+				+1.3
3,420,765	+				-0.6
3,420,765	+				+0.1
3,420,765	+				-0.3
3,420,766	-				+1.4
3,420,766	-				+0.2
3,420,766	-				-2.2
3,420,766	-				-2.7
3,420,766	-				-0.1
3,420,766	-				+0.7
3,420,766	-				+0.1
3,420,766	-				-2.8
3,420,766	-				-0.6
3,420,766	-				-2.6
3,420,766	-				-0.6
3,420,766	-				+0.9
3,420,766	-				-3.1
3,420,766	-				-0.4
3,420,767	+				+0.0
3,420,767	+				+0.0
3,420,767	+				+1.0
3,420,767	+				-2.0
3,420,767	+				-0.2
3,420,767	+				+1.1
3,420,767	+				+1.4
3,420,767	+				-2.2
3,420,767	+				-0.9
3,420,767	+				+1.6
3,420,767	+				-0.6
3,420,767	+				-0.7
3,420,767	+				-2.9
3,420,767	+				-0.7
3,420,768	-				+1.4
3,420,768	-				-1.6
3,420,768	-				-0.6
3,420,768	-				+0.3
3,420,768	-				+0.7
3,420,768	-				-0.3
3,420,768	-				-0.9
3,420,768	-				-0.3
3,420,768	-				-0.6
3,420,768	-				-2.9
3,420,768	-				+0.7
3,420,768	-				-0.2
3,420,768	-				-2.6
3,420,768	-				-0.1
3,420,768	-				-2.3
3,420,768	-				+0.8
3,420,768	-				-0.9
3,420,768	-				-0.6
3,420,768	-				+0.4
3,420,769	+				-1.4
3,420,769	+				-2.8
3,420,769	+				+0.1
3,420,769	+				-1.0
3,420,769	+				+0.9
3,420,769	+				-1.3
3,420,770	-				+1.0
3,420,770	-				-2.7
3,420,770	-				-0.3
3,420,770	-				-1.0
3,420,770	-				+4.0
3,421,001	+		Psyr_2847	0.19	+0.8
3,421,132	-		Psyr_2847	0.48	+1.0
3,421,205	-		Psyr_2847	0.64	+3.0
3,421,280	+		Psyr_2847	0.81	-0.6
3,421,281	-		Psyr_2847	0.81	-0.5
3,421,323	+				-0.6
3,421,323	+				+1.4
3,421,323	+				-0.9
3,421,324	-				-1.3
3,421,324	-				-0.8
3,421,397	+				-2.3
3,421,397	+				-2.0
3,421,397	+				+0.8
3,421,397	+				+0.5
3,421,398	-				-1.0
3,421,398	-				+0.9
3,421,398	-				-0.3
3,421,398	-				+0.8
3,421,398	-				+1.7
3,421,398	-				-1.8
3,421,408	+				+0.7
3,421,408	+				-2.3
3,421,409	-				+1.8
3,421,409	-				+1.1
3,421,409	-				+0.3
3,421,410	+				+1.6
3,421,410	+				+1.3
3,421,411	-				+0.2
3,421,411	-				+0.3
3,421,411	-				-1.8
3,421,411	-				-0.2
3,421,411	-				-0.8
3,421,411	-				+0.2
3,421,418	-				+0.2
3,421,418	-				-1.3
3,421,433	+				+0.4
3,421,434	-				-2.2
3,421,438	+				-0.9
3,421,442	+				-1.2
3,421,443	-				+1.4
3,421,469	+				-1.2
3,421,469	+				-0.2
3,421,469	+				-0.8
3,421,470	-				+2.0
3,421,470	-				+0.4
3,421,533	+				-0.1
3,421,557	+		Psyr_2848	0.14	+1.9
3,421,558	-		Psyr_2848	0.14	+2.1
3,421,558	-		Psyr_2848	0.14	+0.7