Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2034

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
2,358,864	+		Psyr_2033	0.67	+3.0
2,358,865	-		Psyr_2033	0.67	+0.1
2,358,865	-		Psyr_2033	0.67	-3.6
2,358,883	+		Psyr_2033	0.68	-2.6
2,358,883	+		Psyr_2033	0.68	-1.9
2,358,884	-		Psyr_2033	0.68	+2.4
2,358,884	-		Psyr_2033	0.68	-0.7
2,358,884	-		Psyr_2033	0.68	-0.5
2,358,897	+		Psyr_2033	0.68	-0.4
2,358,898	-		Psyr_2033	0.68	+4.0
2,358,898	-		Psyr_2033	0.68	-0.4
2,358,947	-		Psyr_2033	0.71	-1.7
2,358,957	+		Psyr_2033	0.71	+1.0
2,358,957	+		Psyr_2033	0.71	-2.4
2,358,958	-		Psyr_2033	0.71	+1.1
2,358,958	-		Psyr_2033	0.71	+1.4
2,358,958	-		Psyr_2033	0.71	+1.0
2,358,958	-		Psyr_2033	0.71	+2.0
2,358,959	+		Psyr_2033	0.71	+1.5
2,358,967	-		Psyr_2033	0.72	-3.0
2,359,000	-		Psyr_2033	0.73	+1.7
2,359,060	+		Psyr_2033	0.76	-1.2
2,359,060	+		Psyr_2033	0.76	+3.5
2,359,060	+		Psyr_2033	0.76	-2.2
2,359,060	+		Psyr_2033	0.76	-3.0
2,359,060	+		Psyr_2033	0.76	-0.0
2,359,060	+		Psyr_2033	0.76	-2.8
2,359,060	+		Psyr_2033	0.76	-0.2
2,359,061	-		Psyr_2033	0.76	-1.2
2,359,061	-		Psyr_2033	0.76	+1.1
2,359,061	-		Psyr_2033	0.76	+0.0
2,359,061	-		Psyr_2033	0.76	+4.8
2,359,061	-				+0.6
2,359,061	-				+0.7
2,359,061	-		Psyr_2033	0.76	-0.2
2,359,183	+		Psyr_2033	0.82	+0.3
2,359,184	-		Psyr_2033	0.82	-1.7
2,359,212	+		Psyr_2033	0.84	+0.1
2,359,212	+		Psyr_2033	0.84	+2.1
2,359,213	-		Psyr_2033	0.84	+1.8
2,359,265	+		Psyr_2033	0.86	+0.1
2,359,386	+				+0.7
2,359,386	+				+0.0
2,359,386	+				+1.1
2,359,386	+				+0.3
2,359,386	+				-1.9
2,359,386	+				-0.0
2,359,386	+				+0.7
2,359,386	+				+0.8
2,359,386	+				-0.9
2,359,387	-				-0.3
2,359,387	-				-1.9
2,359,387	-				+2.3
2,359,387	-				+1.5
2,359,431	+				-1.6
2,359,432	-				-0.2
2,359,432	-				+1.0
2,359,494	+				-1.3
2,359,494	+				+1.5
2,359,494	+				-2.2
2,359,495	-				-1.7
2,359,495	-				-0.0
2,359,495	-				-3.1
2,359,552	-				+1.9
2,359,609	-				+0.2
2,359,638	+				-0.1
2,359,638	+				-3.2
2,359,639	-				-2.9
2,359,654	+				-0.4
2,359,655	-				-0.0
2,359,671	+				+0.8
2,359,671	+				-1.2
2,359,671	+				+0.2
2,359,671	+				+1.1
2,359,672	-				+0.4
2,359,672	-				-1.4
2,359,672	-				+0.1
2,359,672	-				+0.7
2,359,719	+				-0.2
2,359,719	+				+0.7
2,359,741	+				-0.3
2,359,742	-				-0.4
2,359,742	-				+1.3
2,359,838	-				+2.2
2,359,946	+				+1.0
2,359,946	+				-0.3
2,359,946	+				+1.6
2,360,052	-				-1.4
2,360,307	+		Psyr_2034	0.21	+0.5
2,360,307	+		Psyr_2034	0.21	-1.9
2,360,402	-		Psyr_2034	0.25	+2.1
2,360,556	+		Psyr_2034	0.32	-2.3
2,360,556	+		Psyr_2034	0.32	+1.9
2,360,613	+		Psyr_2034	0.35	+1.6
2,360,613	+		Psyr_2034	0.35	-0.4
2,360,613	+		Psyr_2034	0.35	+0.5
2,360,648	+		Psyr_2034	0.36	+1.6
2,360,649	-		Psyr_2034	0.36	-2.0
2,360,691	+		Psyr_2034	0.38	-1.3
2,360,836	+		Psyr_2034	0.45	+1.1
2,360,837	-		Psyr_2034	0.45	+1.1
2,360,949	+		Psyr_2034	0.50	+1.1
2,360,949	+		Psyr_2034	0.50	+1.4
2,360,949	+		Psyr_2034	0.50	+1.4
2,361,076	+		Psyr_2034	0.56	+0.1
2,361,204	+		Psyr_2034	0.62	+0.8
2,361,205	-		Psyr_2034	0.62	-3.2
2,361,205	-		Psyr_2034	0.62	+0.6
2,361,205	-		Psyr_2034	0.62	+0.8
2,361,205	-		Psyr_2034	0.62	-0.4
2,361,205	-		Psyr_2034	0.62	-0.9
2,361,205	-		Psyr_2034	0.62	+1.0
2,361,264	-		Psyr_2034	0.64	-0.4
2,361,267	+		Psyr_2034	0.64	+1.4
2,361,267	+		Psyr_2034	0.64	-0.2
2,361,268	-		Psyr_2034	0.65	+4.7
2,361,268	-		Psyr_2034	0.65	-1.4
2,361,268	-		Psyr_2034	0.65	+0.6
2,361,268	-		Psyr_2034	0.65	-0.4
2,361,268	-		Psyr_2034	0.65	-0.4
2,361,458	-		Psyr_2034	0.73	+0.0
2,361,458	-		Psyr_2034	0.73	+1.7
2,361,458	-		Psyr_2034	0.73	+2.8
2,361,472	+		Psyr_2034	0.74	+2.1
2,361,473	-		Psyr_2034	0.74	-3.1
2,361,473	-		Psyr_2034	0.74	+0.7
2,361,502	+		Psyr_2034	0.75	-0.4
2,361,505	+		Psyr_2034	0.75	-3.3
2,361,505	+		Psyr_2034	0.75	-3.5
2,361,505	+		Psyr_2034	0.75	-2.9
2,361,505	+		Psyr_2034	0.75	+0.1
2,361,506	-		Psyr_2034	0.75	+0.9
2,361,590	-		Psyr_2034	0.79	-0.1
2,361,667	+		Psyr_2034	0.83	-2.6
2,361,723	+		Psyr_2034	0.85	-2.4
2,361,810	+		Psyr_2034	0.89	-1.8
2,361,810	+		Psyr_2034	0.89	-1.2
2,361,810	+		Psyr_2034	0.89	-0.0
2,361,810	+		Psyr_2034	0.89	-0.4
2,361,811	-		Psyr_2034	0.89	-0.4
2,361,811	-		Psyr_2034	0.89	-0.8
2,361,811	-		Psyr_2034	0.89	-0.7
2,361,823	+		Psyr_2034	0.90	-0.1
2,361,823	+		Psyr_2034	0.90	+0.9
2,361,823	+		Psyr_2034	0.90	-2.2
2,361,823	+		Psyr_2034	0.90	+0.8
2,361,823	+		Psyr_2034	0.90	+1.0
2,361,824	-		Psyr_2034	0.90	+2.4
2,361,824	-		Psyr_2034	0.90	-2.2
2,361,824	-		Psyr_2034	0.90	+0.8
2,361,824	-		Psyr_2034	0.90	+1.7
2,361,824	-		Psyr_2034	0.90	-1.2
2,361,824	-		Psyr_2034	0.90	+2.5
2,361,824	-		Psyr_2034	0.90	-0.0
2,361,824	-		Psyr_2034	0.90	+1.1
2,361,824	-		Psyr_2034	0.90	+0.7
2,361,824	-		Psyr_2034	0.90	+0.0
2,361,824	-		Psyr_2034	0.90	+0.6
2,361,824	-		Psyr_2034	0.90	-0.6
2,362,107	-				-0.2
2,362,323	+		Psyr_2035	0.11	+1.4
2,362,324	-		Psyr_2035	0.11	-2.3
2,362,324	-		Psyr_2035	0.11	-3.4
2,362,324	-		Psyr_2035	0.11	-3.2
2,362,431	-		Psyr_2035	0.18	-0.5
2,362,431	-		Psyr_2035	0.18	-1.2
2,362,431	-		Psyr_2035	0.18	-2.0
2,362,442	+		Psyr_2035	0.19	+0.7
2,362,488	+		Psyr_2035	0.22	+2.3
2,362,619	-		Psyr_2035	0.30	-3.3
2,362,771	+		Psyr_2035	0.40	+0.1
2,362,771	+		Psyr_2035	0.40	-1.2
2,362,772	-		Psyr_2035	0.40	-2.7
2,362,917	-		Psyr_2035	0.50	-0.5