Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1454

Experiment: epiphytic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	epiphytic; Lima bean
1,640,009	+				-3.1
1,640,009	+				+0.7
1,640,010	-				+1.6
1,640,010	-				-0.5
1,640,018	+				+0.6
1,640,019	-				-1.8
1,640,019	-				+2.0
1,640,019	-				+0.7
1,640,040	+				+0.8
1,640,051	+				+2.9
1,640,101	+				-0.4
1,640,101	+				-2.2
1,640,124	+				-0.2
1,640,124	+				+1.1
1,640,125	-				-2.3
1,640,165	+				-3.3
1,640,165	+				-2.5
1,640,165	+				+0.1
1,640,166	-				-0.6
1,640,166	-				-2.5
1,640,166	-				+1.1
1,640,166	-				-0.3
1,640,172	-				+0.5
1,640,328	-		Psyr_1453	0.22	+0.3
1,640,333	+		Psyr_1453	0.23	+0.7
1,640,333	+		Psyr_1453	0.23	-0.9
1,640,334	-		Psyr_1453	0.23	-3.1
1,640,474	+		Psyr_1453	0.41	+0.7
1,640,474	+		Psyr_1453	0.41	+2.7
1,640,475	-		Psyr_1453	0.41	+0.2
1,640,528	+		Psyr_1453	0.49	+1.2
1,640,528	+		Psyr_1453	0.49	+1.1
1,640,529	-		Psyr_1453	0.49	-0.0
1,640,529	-		Psyr_1453	0.49	-1.9
1,640,529	-		Psyr_1453	0.49	-2.7
1,640,529	-		Psyr_1453	0.49	+2.3
1,640,529	-		Psyr_1453	0.49	-0.4
1,640,529	-		Psyr_1453	0.49	+2.0
1,640,529	-		Psyr_1453	0.49	-0.6
1,640,571	-		Psyr_1453	0.54	+0.4
1,640,627	+		Psyr_1453	0.62	+1.6
1,640,627	+		Psyr_1453	0.62	-2.5
1,640,627	+		Psyr_1453	0.62	+0.2
1,640,628	-		Psyr_1453	0.62	-2.2
1,640,628	-		Psyr_1453	0.62	+1.3
1,640,628	-		Psyr_1453	0.62	-0.9
1,640,628	-		Psyr_1453	0.62	-0.9
1,640,628	-		Psyr_1453	0.62	+0.3
1,640,628	-		Psyr_1453	0.62	-2.5
1,640,628	-		Psyr_1453	0.62	+0.3
1,640,628	-		Psyr_1453	0.62	+2.4
1,640,628	-		Psyr_1453	0.62	-2.6
1,640,628	-		Psyr_1453	0.62	+1.1
1,640,628	-		Psyr_1453	0.62	-1.7
1,640,649	+		Psyr_1453	0.65	+1.0
1,640,649	+		Psyr_1453	0.65	+0.5
1,640,649	+		Psyr_1453	0.65	-1.2
1,640,649	+		Psyr_1453	0.65	-0.6
1,640,649	+		Psyr_1453	0.65	-0.9
1,640,649	+		Psyr_1453	0.65	-1.3
1,640,649	+		Psyr_1453	0.65	+1.5
1,640,649	+		Psyr_1453	0.65	+0.7
1,640,650	-		Psyr_1453	0.65	-0.2
1,640,650	-		Psyr_1453	0.65	+0.4
1,640,650	-		Psyr_1453	0.65	-0.1
1,640,650	-		Psyr_1453	0.65	-0.1
1,640,650	-		Psyr_1453	0.65	+0.4
1,640,650	-		Psyr_1453	0.65	+0.4
1,640,650	-		Psyr_1453	0.65	-0.4
1,640,650	-		Psyr_1453	0.65	-0.2
1,640,650	-		Psyr_1453	0.65	+2.6
1,640,769	-		Psyr_1453	0.81	-1.9
1,640,769	-		Psyr_1453	0.81	-0.6
1,640,857	+				+2.3
1,640,857	+				-3.4
1,640,857	+				-2.1
1,640,857	+				-1.8
1,640,857	+				-2.0
1,640,857	+				-0.8
1,640,858	-				+0.9
1,640,858	-				-0.7
1,640,858	-				+0.7
1,640,858	-				-1.8
1,640,858	-				-2.6
1,641,025	+				+0.4
1,641,026	-				-0.0
1,641,035	+				+0.1
1,641,083	+				-2.8
1,641,083	+				-0.1
1,641,084	-				+0.4
1,641,130	+				+2.3
1,641,130	+				-2.2
1,641,130	+				+2.2
1,641,130	+				-3.2
1,641,130	+				+1.7
1,641,131	-				-2.7
1,641,131	-				-0.1
1,641,131	-				-0.2
1,641,131	-				+0.1
1,641,131	-				+1.4
1,641,357	+		Psyr_1454	0.19	+0.0
1,641,497	+		Psyr_1454	0.25	+0.0
1,641,498	-		Psyr_1454	0.25	+1.4
1,641,650	+		Psyr_1454	0.32	+0.5
1,641,650	+		Psyr_1454	0.32	-1.8
1,641,650	+		Psyr_1454	0.32	-2.6
1,641,650	+		Psyr_1454	0.32	+0.3
1,641,650	+		Psyr_1454	0.32	-0.2
1,641,650	+		Psyr_1454	0.32	+0.8
1,641,650	+		Psyr_1454	0.32	+1.5
1,641,650	+		Psyr_1454	0.32	-0.9
1,641,650	+		Psyr_1454	0.32	+1.7
1,641,651	-				+0.4
1,641,651	-		Psyr_1454	0.32	-3.4
1,641,651	-		Psyr_1454	0.32	+2.5
1,641,651	-		Psyr_1454	0.32	+2.0
1,641,651	-		Psyr_1454	0.32	+2.5
1,641,651	-		Psyr_1454	0.32	+1.1
1,641,651	-		Psyr_1454	0.32	-0.4
1,641,654	+		Psyr_1454	0.32	+0.5
1,641,655	-		Psyr_1454	0.33	-1.4
1,641,655	-		Psyr_1454	0.33	-1.2
1,641,743	+		Psyr_1454	0.37	-1.0
1,641,743	+		Psyr_1454	0.37	-3.3
1,641,743	+		Psyr_1454	0.37	-0.3
1,641,743	+		Psyr_1454	0.37	-0.6
1,641,743	+		Psyr_1454	0.37	+0.4
1,641,743	+		Psyr_1454	0.37	-1.4
1,641,744	-		Psyr_1454	0.37	+0.4
1,641,744	-		Psyr_1454	0.37	+2.4
1,641,744	-		Psyr_1454	0.37	+1.2
1,641,744	-		Psyr_1454	0.37	-0.6
1,641,744	-		Psyr_1454	0.37	-1.8
1,641,744	-		Psyr_1454	0.37	+2.5
1,641,744	-		Psyr_1454	0.37	+1.4
1,641,744	-		Psyr_1454	0.37	+0.4
1,641,744	-		Psyr_1454	0.37	-1.5
1,641,744	-		Psyr_1454	0.37	-0.2
1,641,813	-		Psyr_1454	0.40	-1.3
1,641,897	-		Psyr_1454	0.44	+0.2
1,641,897	-		Psyr_1454	0.44	-1.8
1,641,897	-		Psyr_1454	0.44	+0.0
1,641,897	-		Psyr_1454	0.44	-2.8
1,641,897	-		Psyr_1454	0.44	+1.2
1,641,897	-		Psyr_1454	0.44	-0.6
1,641,897	-		Psyr_1454	0.44	+1.7
1,641,897	-		Psyr_1454	0.44	+0.2
1,641,968	+		Psyr_1454	0.47	-1.0
1,641,969	-		Psyr_1454	0.47	-2.7
1,642,079	+		Psyr_1454	0.52	+0.7
1,642,080	-		Psyr_1454	0.52	+0.3
1,642,080	-		Psyr_1454	0.52	+1.2
1,642,080	-		Psyr_1454	0.52	+0.8
1,642,091	+		Psyr_1454	0.53	-0.1
1,642,091	+		Psyr_1454	0.53	-0.2
1,642,091	+		Psyr_1454	0.53	+0.6
1,642,092	-		Psyr_1454	0.53	+0.9
1,642,092	-		Psyr_1454	0.53	+1.0
1,642,092	-		Psyr_1454	0.53	+1.8
1,642,092	-		Psyr_1454	0.53	-0.4
1,642,103	+		Psyr_1454	0.53	-2.0
1,642,103	+		Psyr_1454	0.53	+0.5
1,642,103	+		Psyr_1454	0.53	+1.7
1,642,103	+		Psyr_1454	0.53	+2.4
1,642,103	+		Psyr_1454	0.53	-2.3
1,642,103	+		Psyr_1454	0.53	-0.3
1,642,103	+		Psyr_1454	0.53	+1.4
1,642,103	+				+1.4
1,642,103	+		Psyr_1454	0.53	-0.2
1,642,104	-		Psyr_1454	0.53	+0.6
1,642,104	-		Psyr_1454	0.53	+1.1
1,642,104	-		Psyr_1454	0.53	-1.4
1,642,104	-		Psyr_1454	0.53	-0.1
1,642,104	-		Psyr_1454	0.53	-0.3
1,642,104	-		Psyr_1454	0.53	+1.8
1,642,104	-		Psyr_1454	0.53	+1.9
1,642,154	+		Psyr_1454	0.56	+0.2
1,642,154	+		Psyr_1454	0.56	+0.4
1,642,239	+		Psyr_1454	0.60	-1.0
1,642,240	-		Psyr_1454	0.60	+0.7
1,642,313	+		Psyr_1454	0.63	-0.9
1,642,314	-		Psyr_1454	0.63	+0.5
1,642,352	+		Psyr_1454	0.65	-0.5
1,642,352	+		Psyr_1454	0.65	-0.8
1,642,352	+		Psyr_1454	0.65	+1.4
1,642,353	-		Psyr_1454	0.65	-2.0
1,642,353	-		Psyr_1454	0.65	+1.0
1,642,391	+		Psyr_1454	0.67	+1.4
1,642,391	+		Psyr_1454	0.67	+1.2
1,642,391	+		Psyr_1454	0.67	+1.9
1,642,391	+		Psyr_1454	0.67	-0.4
1,642,391	+		Psyr_1454	0.67	-0.2
1,642,391	+		Psyr_1454	0.67	-0.4
1,642,391	+		Psyr_1454	0.67	-0.6
1,642,392	-		Psyr_1454	0.67	+1.2
1,642,392	-		Psyr_1454	0.67	-1.6
1,642,392	-		Psyr_1454	0.67	+0.6
1,642,546	+		Psyr_1454	0.74	+1.6
1,642,584	-		Psyr_1454	0.76	+0.7
1,642,757	+		Psyr_1454	0.84	+0.5
1,642,757	+		Psyr_1454	0.84	+1.6
1,642,757	+		Psyr_1454	0.84	-2.9
1,642,757	+		Psyr_1454	0.84	+0.6
1,642,757	+		Psyr_1454	0.84	+0.9
1,642,757	+		Psyr_1454	0.84	-0.7
1,642,758	-		Psyr_1454	0.84	-3.8
1,642,758	-		Psyr_1454	0.84	-0.9
1,642,758	-		Psyr_1454	0.84	+1.2
1,642,758	-		Psyr_1454	0.84	-1.4
1,642,758	-		Psyr_1454	0.84	+0.2
1,642,767	-		Psyr_1454	0.84	-0.1
1,642,778	+		Psyr_1454	0.84	-2.6
1,642,778	+		Psyr_1454	0.84	-0.2
1,642,778	+		Psyr_1454	0.84	-0.8
1,642,778	+		Psyr_1454	0.84	-0.6
1,642,778	+		Psyr_1454	0.84	-1.2
1,642,778	+		Psyr_1454	0.84	+1.5
1,642,778	+		Psyr_1454	0.84	+1.2
1,642,778	+		Psyr_1454	0.84	+0.6
1,642,778	+		Psyr_1454	0.84	+1.2
1,642,779	-		Psyr_1454	0.85	-0.3
1,642,779	-		Psyr_1454	0.85	+1.2
1,642,779	-		Psyr_1454	0.85	-2.2
1,642,779	-		Psyr_1454	0.85	-1.6
1,642,779	-		Psyr_1454	0.85	+0.4
1,642,880	+		Psyr_1454	0.89	-3.2
1,642,880	+		Psyr_1454	0.89	-3.2
1,642,880	+		Psyr_1454	0.89	-1.9
1,642,945	+				-3.2
1,642,945	+				+0.4
1,642,946	-				-1.4
1,642,996	-				+0.6
1,642,996	-				+0.3
1,643,051	+				+1.9
1,643,051	+				-1.2
1,643,051	+				+1.7
1,643,051	+				-1.3
1,643,051	+				-0.2
1,643,052	-				+1.3
1,643,052	-				+1.6
1,643,060	+				+1.4
1,643,060	+				+0.8
1,643,060	+				-0.5
1,643,061	-				+0.3
1,643,061	-				-1.4
1,643,061	-				+1.7
1,643,061	-				+2.4
1,643,068	+				-0.9
1,643,069	-				-0.4
1,643,125	+				+0.9
1,643,125	+				+0.9
1,643,126	-				+0.7
1,643,323	-		Psyr_1455	0.39	+1.1
1,643,451	+		Psyr_1455	0.64	-4.2
1,643,452	-		Psyr_1455	0.65	+0.4
1,643,452	-		Psyr_1455	0.65	-1.6
1,643,452	-		Psyr_1455	0.65	+0.0
1,643,519	-		Psyr_1455	0.78	-0.3
1,643,522	-		Psyr_1455	0.79	-1.6
1,643,522	-		Psyr_1455	0.79	+2.5
1,643,522	-		Psyr_1455	0.79	-1.2
1,643,522	-		Psyr_1455	0.79	-2.0
1,643,585	+				+0.3
1,643,585	+				-1.8
1,643,585	+				-0.2
1,643,585	+				+0.8
1,643,585	+				-2.5
1,643,586	-				-2.1
1,643,586	-				-2.2
1,643,586	-				-1.2
1,643,586	-				-2.0
1,643,586	-				+0.5
1,643,695	-		Psyr_1456	0.12	-1.2
1,643,795	+		Psyr_1456	0.30	-1.2
1,643,795	+		Psyr_1456	0.30	-3.2
1,643,795	+		Psyr_1456	0.30	+0.8
1,643,796	-		Psyr_1456	0.30	+0.2
1,643,796	-		Psyr_1456	0.30	+1.8
1,643,796	-		Psyr_1456	0.30	-1.0
1,643,796	-		Psyr_1456	0.30	-2.3
1,643,796	-		Psyr_1456	0.30	+0.9
1,643,812	-		Psyr_1456	0.33	+0.3
1,643,929	+		Psyr_1456	0.54	-3.1
1,643,930	-		Psyr_1456	0.54	+0.4
1,643,930	-		Psyr_1456	0.54	+0.4
1,643,930	-		Psyr_1456	0.54	+2.1
1,643,930	-		Psyr_1456	0.54	-0.1
1,643,930	-		Psyr_1456	0.54	-0.2
1,643,930	-		Psyr_1456	0.54	-2.0
1,643,930	-		Psyr_1456	0.54	+0.6
1,643,930	-		Psyr_1456	0.54	-0.5
1,643,930	-		Psyr_1456	0.54	-0.0
1,643,930	-		Psyr_1456	0.54	+0.2
1,643,930	-		Psyr_1456	0.54	-0.7
1,643,930	-		Psyr_1456	0.54	-0.1
1,643,971	+		Psyr_1456	0.62	-2.1
1,643,971	+		Psyr_1456	0.62	+1.0
1,643,971	+		Psyr_1456	0.62	+1.8
1,643,971	+		Psyr_1456	0.62	+1.4
1,643,971	+		Psyr_1456	0.62	-0.6
1,643,971	+		Psyr_1456	0.62	-1.4
1,643,972	-		Psyr_1456	0.62	-0.4
1,643,972	-		Psyr_1456	0.62	-0.1
1,643,972	-		Psyr_1456	0.62	-1.2
1,643,972	-		Psyr_1456	0.62	+0.2
1,643,972	-		Psyr_1456	0.62	-1.8
1,644,055	-		Psyr_1456	0.77	-0.2