Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0802

Experiment: epiphytic; Lima bean

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0801 and Psyr_0802 are separated by 54 nucleotidesPsyr_0802 and Psyr_0803 are separated by 66 nucleotides Psyr_0801: Psyr_0801 - conserved hypothetical protein, at 906,688 to 907,686 _0801 Psyr_0802: Psyr_0802 - Peptidase S1, chymotrypsin, at 907,741 to 908,880 _0802 Psyr_0803: Psyr_0803 - conserved hypothetical protein, at 908,947 to 910,080 _0803 Position (kb) 907 908 909Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 906.915 kb on + strand, within Psyr_0801at 906.916 kb on - strand, within Psyr_0801at 906.916 kb on - strand, within Psyr_0801at 906.916 kb on - strand, within Psyr_0801at 906.917 kb on + strand, within Psyr_0801at 906.918 kb on - strand, within Psyr_0801at 906.918 kb on - strand, within Psyr_0801at 906.918 kb on - strand, within Psyr_0801at 906.928 kb on + strand, within Psyr_0801at 906.928 kb on + strand, within Psyr_0801at 907.162 kb on + strand, within Psyr_0801at 907.162 kb on + strand, within Psyr_0801at 907.252 kb on + strand, within Psyr_0801at 907.252 kb on + strand, within Psyr_0801at 907.253 kb on - strand, within Psyr_0801at 907.257 kb on + strand, within Psyr_0801at 907.258 kb on - strand, within Psyr_0801at 907.306 kb on + strand, within Psyr_0801at 907.306 kb on + strand, within Psyr_0801at 907.306 kb on + strand, within Psyr_0801at 907.306 kb on + strand, within Psyr_0801at 907.306 kb on + strand, within Psyr_0801at 907.307 kb on - strand, within Psyr_0801at 907.307 kb on - strand, within Psyr_0801at 907.307 kb on - strand, within Psyr_0801at 907.307 kb on - strand, within Psyr_0801at 907.307 kb on - strand, within Psyr_0801at 907.424 kb on + strand, within Psyr_0801at 907.424 kb on + strand, within Psyr_0801at 907.424 kb on + strand, within Psyr_0801at 907.425 kb on - strand, within Psyr_0801at 907.425 kb on - strand, within Psyr_0801at 907.425 kb on - strand, within Psyr_0801at 907.552 kb on + strand, within Psyr_0801at 907.585 kb on - strand, within Psyr_0801at 907.723 kb on + strandat 907.723 kb on + strandat 907.775 kb on + strandat 907.775 kb on + strandat 907.775 kb on + strandat 907.775 kb on + strandat 907.775 kb on + strandat 907.775 kb on + strandat 907.775 kb on + strandat 907.775 kb on + strandat 907.775 kb on + strandat 907.776 kb on - strandat 907.812 kb on + strandat 907.813 kb on - strandat 907.834 kb on + strandat 907.835 kb on - strandat 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.014 kb on + strand, within Psyr_0802at 908.015 kb on - strand, within Psyr_0802at 908.015 kb on - strand, within Psyr_0802at 908.015 kb on - strand, within Psyr_0802at 908.015 kb on - strand, within Psyr_0802at 908.134 kb on + strand, within Psyr_0802at 908.134 kb on + strand, within Psyr_0802at 908.135 kb on - strand, within Psyr_0802at 908.186 kb on - strand, within Psyr_0802at 908.365 kb on + strand, within Psyr_0802at 908.366 kb on - strand, within Psyr_0802at 908.366 kb on - strand, within Psyr_0802at 908.366 kb on - strand, within Psyr_0802at 908.366 kb on - strand, within Psyr_0802at 908.366 kb on - strand, within Psyr_0802at 908.366 kb on - strand, within Psyr_0802at 908.366 kb on - strand, within Psyr_0802at 908.366 kb on - strand, within Psyr_0802at 908.366 kb on - strand, within Psyr_0802at 908.366 kb on - strand, within Psyr_0802at 908.389 kb on + strand, within Psyr_0802at 908.389 kb on + strand, within Psyr_0802at 908.473 kb on - strand, within Psyr_0802at 908.508 kb on + strand, within Psyr_0802at 908.577 kb on + strand, within Psyr_0802at 908.812 kb on + strandat 908.812 kb on + strandat 908.812 kb on + strandat 908.813 kb on - strandat 908.942 kb on + strandat 908.976 kb on + strandat 908.976 kb on + strandat 908.977 kb on - strandat 908.977 kb on - strandat 909.252 kb on - strand, within Psyr_0803at 909.252 kb on - strand, within Psyr_0803at 909.262 kb on + strand, within Psyr_0803at 909.262 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.289 kb on + strand, within Psyr_0803at 909.290 kb on - strand, within Psyr_0803at 909.290 kb on - strand, within Psyr_0803at 909.290 kb on - strand, within Psyr_0803at 909.290 kb on - strand, within Psyr_0803at 909.290 kb on - strand, within Psyr_0803at 909.290 kb on - strand, within Psyr_0803at 909.290 kb on - strand, within Psyr_0803at 909.290 kb on - strand, within Psyr_0803at 909.290 kb on - strand, within Psyr_0803at 909.290 kb on - strand, within Psyr_0803at 909.290 kb on - strand, within Psyr_0803at 909.564 kb on + strand, within Psyr_0803at 909.613 kb on + strand, within Psyr_0803at 909.613 kb on + strand, within Psyr_0803at 909.614 kb on - strand, within Psyr_0803at 909.614 kb on - strand, within Psyr_0803at 909.788 kb on + strand, within Psyr_0803at 909.788 kb on + strand, within Psyr_0803at 909.788 kb on + strand, within Psyr_0803at 909.788 kb on + strand, within Psyr_0803at 909.788 kb on + strand, within Psyr_0803at 909.788 kb on + strand, within Psyr_0803

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Per-strain Table

Position Strand Gene LocusTag Fraction epiphytic; Lima bean
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906,915 + Psyr_0801 0.23 +0.6
906,916 - Psyr_0801 0.23 -1.2
906,916 - Psyr_0801 0.23 -1.3
906,916 - Psyr_0801 0.23 +1.1
906,917 + Psyr_0801 0.23 -0.1
906,918 - Psyr_0801 0.23 +0.2
906,918 - Psyr_0801 0.23 -0.1
906,918 - Psyr_0801 0.23 -0.3
906,928 + Psyr_0801 0.24 -2.3
906,928 + Psyr_0801 0.24 +1.3
907,162 + Psyr_0801 0.47 +1.5
907,162 + Psyr_0801 0.47 +1.4
907,252 + Psyr_0801 0.56 +0.6
907,252 + Psyr_0801 0.56 +1.2
907,253 - Psyr_0801 0.57 -0.9
907,257 + Psyr_0801 0.57 +0.8
907,258 - Psyr_0801 0.57 -0.0
907,306 + Psyr_0801 0.62 -0.8
907,306 + Psyr_0801 0.62 -0.9
907,306 + Psyr_0801 0.62 -2.8
907,306 + Psyr_0801 0.62 +0.9
907,306 + Psyr_0801 0.62 +1.6
907,307 - Psyr_0801 0.62 +0.8
907,307 - Psyr_0801 0.62 -0.0
907,307 - Psyr_0801 0.62 -1.6
907,307 - Psyr_0801 0.62 -0.5
907,307 - Psyr_0801 0.62 +0.4
907,424 + Psyr_0801 0.74 +0.8
907,424 + Psyr_0801 0.74 -2.9
907,424 + Psyr_0801 0.74 -0.5
907,425 - Psyr_0801 0.74 -2.5
907,425 - Psyr_0801 0.74 -1.1
907,425 - Psyr_0801 0.74 +0.6
907,552 + Psyr_0801 0.86 +0.9
907,585 - Psyr_0801 0.90 -2.9
907,723 + -1.5
907,723 + -1.0
907,775 + +0.1
907,775 + -0.5
907,775 + +0.5
907,775 + -0.5
907,775 + +1.7
907,775 + -2.0
907,775 + +1.0
907,775 + +1.6
907,775 + -0.1
907,776 - -0.9
907,812 + -1.3
907,813 - +1.5
907,834 + +1.2
907,835 - +2.2
908,008 + Psyr_0802 0.23 +1.8
908,008 + Psyr_0802 0.23 -0.1
908,008 + Psyr_0802 0.23 +0.9
908,008 + Psyr_0802 0.23 -0.4
908,008 + Psyr_0802 0.23 +0.9
908,008 + Psyr_0802 0.23 -1.7
908,008 + Psyr_0802 0.23 -3.1
908,008 + Psyr_0802 0.23 +0.6
908,008 + Psyr_0802 0.23 -1.2
908,008 + Psyr_0802 0.23 +0.7
908,008 + Psyr_0802 0.23 +0.2
908,008 + Psyr_0802 0.23 -0.5
908,008 + Psyr_0802 0.23 +0.5
908,008 + Psyr_0802 0.23 +1.5
908,008 + Psyr_0802 0.23 +0.8
908,008 + Psyr_0802 0.23 +1.6
908,008 + Psyr_0802 0.23 +1.4
908,008 + Psyr_0802 0.23 -0.1
908,009 - Psyr_0802 0.24 -0.1
908,009 - Psyr_0802 0.24 -0.8
908,009 - Psyr_0802 0.24 -1.3
908,009 - Psyr_0802 0.24 -3.1
908,009 - Psyr_0802 0.24 +1.5
908,009 - Psyr_0802 0.24 -0.9
908,009 - Psyr_0802 0.24 -0.7
908,009 - Psyr_0802 0.24 +0.8
908,009 - Psyr_0802 0.24 -0.4
908,009 - Psyr_0802 0.24 +2.3
908,009 - Psyr_0802 0.24 -0.2
908,009 - Psyr_0802 0.24 +0.3
908,009 - Psyr_0802 0.24 +0.4
908,009 - Psyr_0802 0.24 +1.5
908,009 - Psyr_0802 0.24 -0.7
908,009 - Psyr_0802 0.24 +1.1
908,009 - Psyr_0802 0.24 +1.9
908,014 + Psyr_0802 0.24 -1.3
908,015 - Psyr_0802 0.24 -0.9
908,015 - Psyr_0802 0.24 +2.3
908,015 - Psyr_0802 0.24 +0.5
908,015 - Psyr_0802 0.24 +1.8
908,134 + Psyr_0802 0.34 +0.0
908,134 + Psyr_0802 0.34 +0.6
908,135 - Psyr_0802 0.35 -2.1
908,186 - Psyr_0802 0.39 +0.8
908,365 + Psyr_0802 0.55 +0.6
908,366 - Psyr_0802 0.55 +1.5
908,366 - Psyr_0802 0.55 +2.8
908,366 - Psyr_0802 0.55 -0.9
908,366 - Psyr_0802 0.55 +2.0
908,366 - Psyr_0802 0.55 -1.0
908,366 - Psyr_0802 0.55 -0.9
908,366 - Psyr_0802 0.55 -0.7
908,366 - Psyr_0802 0.55 -1.1
908,366 - Psyr_0802 0.55 +0.1
908,366 - Psyr_0802 0.55 -0.1
908,389 + Psyr_0802 0.57 -0.2
908,389 + Psyr_0802 0.57 +0.6
908,473 - Psyr_0802 0.64 +1.1
908,508 + Psyr_0802 0.67 +1.5
908,577 + Psyr_0802 0.73 +1.5
908,812 + +1.1
908,812 + +0.1
908,812 + +2.5
908,813 - +0.6
908,942 + -0.1
908,976 + +0.8
908,976 + -1.2
908,977 - +0.6
908,977 - +1.5
909,252 - Psyr_0803 0.27 +0.5
909,252 - Psyr_0803 0.27 +1.6
909,262 + Psyr_0803 0.28 +0.3
909,262 + Psyr_0803 0.28 +0.6
909,289 + Psyr_0803 0.30 -0.5
909,289 + Psyr_0803 0.30 +2.8
909,289 + Psyr_0803 0.30 -1.7
909,289 + Psyr_0803 0.30 +2.6
909,289 + Psyr_0803 0.30 -2.9
909,289 + Psyr_0803 0.30 -1.2
909,289 + Psyr_0803 0.30 -2.9
909,289 + Psyr_0803 0.30 +3.5
909,289 + Psyr_0803 0.30 -3.6
909,289 + Psyr_0803 0.30 +2.9
909,289 + Psyr_0803 0.30 +0.8
909,289 + Psyr_0803 0.30 +1.0
909,289 + Psyr_0803 0.30 +0.9
909,289 + Psyr_0803 0.30 -0.3
909,289 + Psyr_0803 0.30 +0.1
909,289 + Psyr_0803 0.30 -1.1
909,289 + Psyr_0803 0.30 -0.1
909,289 + Psyr_0803 0.30 +1.0
909,289 + Psyr_0803 0.30 +0.9
909,289 + Psyr_0803 0.30 -0.9
909,289 + Psyr_0803 0.30 -0.2
909,289 + Psyr_0803 0.30 +0.5
909,290 - Psyr_0803 0.30 +0.3
909,290 - Psyr_0803 0.30 -3.5
909,290 - Psyr_0803 0.30 +1.1
909,290 - Psyr_0803 0.30 +0.4
909,290 - Psyr_0803 0.30 -0.5
909,290 - Psyr_0803 0.30 +0.3
909,290 - Psyr_0803 0.30 -2.1
909,290 - Psyr_0803 0.30 -0.7
909,290 - Psyr_0803 0.30 +2.1
909,290 - Psyr_0803 0.30 -0.9
909,290 - Psyr_0803 0.30 +0.4
909,564 + Psyr_0803 0.54 +1.1
909,613 + Psyr_0803 0.59 +0.4
909,613 + Psyr_0803 0.59 -0.9
909,614 - Psyr_0803 0.59 +1.5
909,614 - Psyr_0803 0.59 +1.0
909,788 + Psyr_0803 0.74 +0.7
909,788 + Psyr_0803 0.74 +0.2
909,788 + Psyr_0803 0.74 -1.5
909,788 + Psyr_0803 0.74 -2.0
909,788 + Psyr_0803 0.74 -0.5
909,788 + Psyr_0803 0.74 -1.7

Or see this region's nucleotide sequence