Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0628 and Psyr_0629 are separated by 431 nucleotides Psyr_0629 and Psyr_0630 are separated by 225 nucleotides
Psyr_0628: Psyr_0628 - Ethanolamine ammonia-lyase heavy chain, at 716,978 to 718,372
_0628
Psyr_0629: Psyr_0629 - Aldehyde dehydrogenase (NAD+), at 718,804 to 720,324
_0629
Psyr_0630: Psyr_0630 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 720,550 to 721,899
_0630
Position (kb) 718
719
720
721 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 717.823 kb on - strand, within Psyr_0628 at 718.211 kb on - strand, within Psyr_0628 at 718.275 kb on + strand at 718.276 kb on - strand at 718.372 kb on + strand at 718.452 kb on + strand at 718.466 kb on + strand at 718.466 kb on + strand at 718.466 kb on + strand at 718.466 kb on + strand at 718.467 kb on - strand at 718.467 kb on - strand at 718.467 kb on - strand at 718.474 kb on + strand at 718.474 kb on + strand at 718.474 kb on + strand at 718.474 kb on + strand at 718.474 kb on + strand at 718.475 kb on - strand at 718.475 kb on - strand at 718.475 kb on - strand at 718.475 kb on - strand at 718.477 kb on + strand at 718.477 kb on + strand at 718.477 kb on + strand at 718.478 kb on - strand at 718.537 kb on + strand at 718.537 kb on + strand at 718.537 kb on + strand at 718.537 kb on + strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.612 kb on + strand at 718.626 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.693 kb on - strand at 718.693 kb on - strand at 718.709 kb on + strand at 718.710 kb on - strand at 718.722 kb on - strand at 718.722 kb on - strand at 718.763 kb on + strand at 718.764 kb on - strand at 718.801 kb on + strand at 718.801 kb on + strand at 718.802 kb on - strand at 718.802 kb on - strand at 718.802 kb on - strand at 718.805 kb on + strand at 718.805 kb on + strand at 718.805 kb on + strand at 718.806 kb on - strand at 718.806 kb on - strand at 718.806 kb on - strand at 718.806 kb on - strand at 718.806 kb on - strand at 718.806 kb on - strand at 718.832 kb on + strand at 718.832 kb on + strand at 718.832 kb on + strand at 718.832 kb on + strand at 718.832 kb on + strand at 718.833 kb on - strand at 718.833 kb on - strand at 718.833 kb on - strand at 718.913 kb on + strand at 718.913 kb on + strand at 718.998 kb on - strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.261 kb on + strand, within Psyr_0629 at 719.854 kb on + strand, within Psyr_0629 at 719.879 kb on + strand, within Psyr_0629 at 719.879 kb on + strand, within Psyr_0629 at 719.880 kb on - strand, within Psyr_0629 at 719.890 kb on - strand, within Psyr_0629 at 720.221 kb on + strand at 720.221 kb on + strand at 720.221 kb on + strand at 720.222 kb on - strand at 720.222 kb on - strand at 720.222 kb on - strand at 720.260 kb on + strand at 720.260 kb on + strand at 720.260 kb on + strand at 720.260 kb on + strand at 720.260 kb on + strand at 720.260 kb on + strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.261 kb on - strand at 720.264 kb on + strand at 720.264 kb on + strand at 720.265 kb on - strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.327 kb on + strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.328 kb on - strand at 720.403 kb on + strand at 720.404 kb on - strand at 720.404 kb on - strand at 720.436 kb on + strand at 720.436 kb on + strand at 720.436 kb on + strand at 720.437 kb on - strand at 720.442 kb on + strand at 720.442 kb on + strand at 720.442 kb on + strand at 720.443 kb on - strand at 720.443 kb on - strand at 720.443 kb on - strand at 720.443 kb on - strand at 720.469 kb on - strand at 720.514 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.555 kb on + strand at 720.706 kb on + strand, within Psyr_0630 at 720.706 kb on + strand, within Psyr_0630 at 720.787 kb on + strand, within Psyr_0630 at 720.787 kb on + strand, within Psyr_0630 at 720.787 kb on + strand, within Psyr_0630 at 720.811 kb on + strand, within Psyr_0630 at 721.075 kb on + strand, within Psyr_0630
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 717,823 - Psyr_0628 0.61 -2.6 718,211 - Psyr_0628 0.88 +0.2 718,275 + -0.1 718,276 - -1.8 718,372 + +1.5 718,452 + -0.1 718,466 + -0.1 718,466 + +0.9 718,466 + -0.5 718,466 + -0.8 718,467 - +0.0 718,467 - -1.8 718,467 - +0.6 718,474 + -1.3 718,474 + -1.2 718,474 + -1.2 718,474 + -0.6 718,474 + -1.5 718,475 - -1.3 718,475 - -3.1 718,475 - -2.3 718,475 - -1.3 718,477 + +6.7 718,477 + +0.4 718,477 + -1.8 718,478 - +1.1 718,537 + +1.5 718,537 + +0.6 718,537 + -2.3 718,537 + +0.1 718,538 - -3.1 718,538 - -2.3 718,538 - -0.1 718,538 - +1.1 718,538 - +1.1 718,538 - -2.2 718,538 - +0.9 718,538 - -2.3 718,538 - -0.8 718,538 - +0.5 718,612 + -1.3 718,626 - +1.9 718,628 - -0.1 718,628 - -0.2 718,628 - +1.2 718,628 - +1.3 718,628 - -2.3 718,628 - +0.5 718,628 - -2.9 718,628 - +2.3 718,628 - -1.8 718,693 - -1.3 718,693 - -2.7 718,709 + +0.5 718,710 - +0.5 718,722 - +1.3 718,722 - +2.0 718,763 + -1.9 718,764 - +1.6 718,801 + +0.4 718,801 + +1.7 718,802 - -1.3 718,802 - +1.5 718,802 - -2.4 718,805 + -0.4 718,805 + -1.8 718,805 + -0.1 718,806 - -0.2 718,806 - +1.1 718,806 - +0.9 718,806 - -1.9 718,806 - -1.8 718,806 - +1.0 718,832 + +0.2 718,832 + -2.6 718,832 + -1.5 718,832 + +0.1 718,832 + -0.3 718,833 - +0.2 718,833 - +1.3 718,833 - -1.8 718,913 + +0.3 718,913 + +0.9 718,998 - Psyr_0629 0.13 +1.9 719,174 + Psyr_0629 0.24 +1.0 719,174 + Psyr_0629 0.24 -2.9 719,174 + Psyr_0629 0.24 +1.1 719,174 + Psyr_0629 0.24 -1.0 719,174 + Psyr_0629 0.24 +0.3 719,174 + Psyr_0629 0.24 -0.2 719,174 + Psyr_0629 0.24 +2.5 719,174 + Psyr_0629 0.24 +0.7 719,174 + Psyr_0629 0.24 +1.0 719,174 + Psyr_0629 0.24 -1.4 719,174 + Psyr_0629 0.24 +4.6 719,174 + Psyr_0629 0.24 +1.5 719,175 - Psyr_0629 0.24 +0.3 719,175 - Psyr_0629 0.24 -0.5 719,175 - Psyr_0629 0.24 -1.1 719,175 - Psyr_0629 0.24 -1.9 719,175 - Psyr_0629 0.24 +0.2 719,175 - Psyr_0629 0.24 -1.4 719,175 - Psyr_0629 0.24 -0.9 719,175 - Psyr_0629 0.24 +1.5 719,261 + Psyr_0629 0.30 -0.6 719,854 + Psyr_0629 0.69 -0.1 719,879 + Psyr_0629 0.71 +0.4 719,879 + Psyr_0629 0.71 -0.4 719,880 - Psyr_0629 0.71 -1.5 719,890 - Psyr_0629 0.71 -0.1 720,221 + -2.6 720,221 + -3.0 720,221 + +0.2 720,222 - -0.1 720,222 - +0.5 720,222 - +0.4 720,260 + +0.6 720,260 + -1.3 720,260 + +0.0 720,260 + -0.9 720,260 + -0.5 720,260 + -1.9 720,261 - -1.8 720,261 - +1.1 720,261 - +1.2 720,261 - -1.3 720,261 - +0.9 720,261 - +0.2 720,261 - +0.8 720,264 + -1.9 720,264 + +0.5 720,265 - +1.1 720,327 + -0.6 720,327 + +1.9 720,327 + -4.3 720,327 + +0.2 720,327 + +0.2 720,327 + +1.4 720,327 + -0.3 720,327 + +0.8 720,327 + -1.7 720,327 + -1.2 720,327 + -0.9 720,327 + +0.5 720,327 + -3.1 720,328 - +0.9 720,328 - +0.5 720,328 - +1.1 720,328 - -1.7 720,328 - +0.6 720,328 - +1.6 720,328 - -0.5 720,328 - +0.7 720,328 - +1.2 720,328 - +1.4 720,328 - +0.1 720,328 - -1.9 720,328 - +1.1 720,328 - +0.0 720,328 - -2.0 720,328 - +1.5 720,403 + -0.5 720,404 - +0.4 720,404 - +1.3 720,436 + +0.6 720,436 + -0.6 720,436 + +1.4 720,437 - +0.1 720,442 + +0.6 720,442 + +0.8 720,442 + +0.4 720,443 - -2.5 720,443 - -1.4 720,443 - +2.7 720,443 - +1.4 720,469 - +0.7 720,514 + +0.7 720,555 + -3.7 720,555 + -1.8 720,555 + +0.7 720,555 + -1.2 720,555 + -0.2 720,555 + +1.3 720,555 + +1.2 720,555 + +1.1 720,555 + +0.4 720,555 + +2.0 720,555 + -0.7 720,706 + Psyr_0630 0.12 -2.9 720,706 + Psyr_0630 0.12 -1.2 720,787 + Psyr_0630 0.18 +0.3 720,787 + Psyr_0630 0.18 -1.5 720,787 + Psyr_0630 0.18 -1.7 720,811 + Psyr_0630 0.19 -0.6 721,075 + Psyr_0630 0.39 +0.8
Or see this region's nucleotide sequence