Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0627 and Psyr_0628 are separated by 11 nucleotides Psyr_0628 and Psyr_0629 are separated by 431 nucleotides
Psyr_0627: Psyr_0627 - Ethanolamine ammonia-lyase light chain, at 716,118 to 716,966
_0627
Psyr_0628: Psyr_0628 - Ethanolamine ammonia-lyase heavy chain, at 716,978 to 718,372
_0628
Psyr_0629: Psyr_0629 - Aldehyde dehydrogenase (NAD+), at 718,804 to 720,324
_0629
Position (kb) 716
717
718
719 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 716.003 kb on + strand at 716.003 kb on + strand at 716.004 kb on - strand at 716.004 kb on - strand at 716.035 kb on + strand at 716.035 kb on + strand at 716.036 kb on - strand at 716.036 kb on - strand at 716.049 kb on + strand at 716.102 kb on + strand at 716.102 kb on + strand at 716.103 kb on - strand at 716.269 kb on + strand, within Psyr_0627 at 716.269 kb on + strand, within Psyr_0627 at 716.270 kb on - strand, within Psyr_0627 at 716.270 kb on - strand, within Psyr_0627 at 716.270 kb on - strand, within Psyr_0627 at 716.270 kb on - strand, within Psyr_0627 at 716.270 kb on - strand, within Psyr_0627 at 716.327 kb on + strand, within Psyr_0627 at 716.327 kb on + strand, within Psyr_0627 at 716.327 kb on + strand, within Psyr_0627 at 716.328 kb on - strand, within Psyr_0627 at 716.328 kb on - strand, within Psyr_0627 at 716.328 kb on - strand, within Psyr_0627 at 716.328 kb on - strand, within Psyr_0627 at 716.328 kb on - strand, within Psyr_0627 at 716.328 kb on - strand, within Psyr_0627 at 716.368 kb on + strand, within Psyr_0627 at 716.368 kb on + strand, within Psyr_0627 at 716.368 kb on + strand, within Psyr_0627 at 716.368 kb on + strand, within Psyr_0627 at 716.369 kb on - strand, within Psyr_0627 at 716.369 kb on - strand, within Psyr_0627 at 716.369 kb on - strand, within Psyr_0627 at 716.369 kb on - strand, within Psyr_0627 at 716.369 kb on - strand, within Psyr_0627 at 716.377 kb on + strand, within Psyr_0627 at 716.377 kb on + strand, within Psyr_0627 at 716.377 kb on + strand, within Psyr_0627 at 716.377 kb on + strand, within Psyr_0627 at 716.378 kb on - strand, within Psyr_0627 at 716.611 kb on - strand, within Psyr_0627 at 716.611 kb on - strand, within Psyr_0627 at 716.648 kb on - strand, within Psyr_0627 at 716.710 kb on + strand, within Psyr_0627 at 716.710 kb on + strand, within Psyr_0627 at 716.710 kb on + strand, within Psyr_0627 at 716.710 kb on + strand, within Psyr_0627 at 716.710 kb on + strand, within Psyr_0627 at 716.710 kb on + strand, within Psyr_0627 at 716.710 kb on + strand, within Psyr_0627 at 716.710 kb on + strand, within Psyr_0627 at 716.711 kb on - strand, within Psyr_0627 at 716.711 kb on - strand, within Psyr_0627 at 716.711 kb on - strand, within Psyr_0627 at 716.955 kb on + strand at 716.955 kb on + strand at 716.955 kb on + strand at 716.955 kb on + strand at 716.956 kb on - strand at 716.956 kb on - strand at 716.956 kb on - strand at 716.956 kb on - strand at 716.956 kb on - strand at 716.956 kb on - strand at 716.984 kb on + strand at 716.984 kb on + strand at 716.984 kb on + strand at 716.984 kb on + strand at 716.984 kb on + strand at 716.984 kb on + strand at 716.984 kb on + strand at 716.984 kb on + strand at 716.985 kb on - strand at 716.985 kb on - strand at 716.985 kb on - strand at 716.985 kb on - strand at 717.088 kb on - strand at 717.156 kb on + strand, within Psyr_0628 at 717.156 kb on + strand, within Psyr_0628 at 717.156 kb on + strand, within Psyr_0628 at 717.157 kb on - strand, within Psyr_0628 at 717.157 kb on - strand, within Psyr_0628 at 717.274 kb on - strand, within Psyr_0628 at 717.360 kb on + strand, within Psyr_0628 at 717.360 kb on + strand, within Psyr_0628 at 717.360 kb on + strand, within Psyr_0628 at 717.361 kb on - strand, within Psyr_0628 at 717.361 kb on - strand, within Psyr_0628 at 717.361 kb on - strand, within Psyr_0628 at 717.361 kb on - strand, within Psyr_0628 at 717.433 kb on - strand, within Psyr_0628 at 717.513 kb on + strand, within Psyr_0628 at 717.513 kb on + strand, within Psyr_0628 at 717.513 kb on + strand, within Psyr_0628 at 717.514 kb on - strand, within Psyr_0628 at 717.514 kb on - strand, within Psyr_0628 at 717.565 kb on - strand, within Psyr_0628 at 717.716 kb on + strand, within Psyr_0628 at 717.716 kb on + strand, within Psyr_0628 at 717.717 kb on - strand, within Psyr_0628 at 717.823 kb on - strand, within Psyr_0628 at 718.211 kb on - strand, within Psyr_0628 at 718.275 kb on + strand at 718.276 kb on - strand at 718.372 kb on + strand at 718.452 kb on + strand at 718.466 kb on + strand at 718.466 kb on + strand at 718.466 kb on + strand at 718.466 kb on + strand at 718.467 kb on - strand at 718.467 kb on - strand at 718.467 kb on - strand at 718.474 kb on + strand at 718.474 kb on + strand at 718.474 kb on + strand at 718.474 kb on + strand at 718.474 kb on + strand at 718.475 kb on - strand at 718.475 kb on - strand at 718.475 kb on - strand at 718.475 kb on - strand at 718.477 kb on + strand at 718.477 kb on + strand at 718.477 kb on + strand at 718.478 kb on - strand at 718.537 kb on + strand at 718.537 kb on + strand at 718.537 kb on + strand at 718.537 kb on + strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.538 kb on - strand at 718.612 kb on + strand at 718.626 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.628 kb on - strand at 718.693 kb on - strand at 718.693 kb on - strand at 718.709 kb on + strand at 718.710 kb on - strand at 718.722 kb on - strand at 718.722 kb on - strand at 718.763 kb on + strand at 718.764 kb on - strand at 718.801 kb on + strand at 718.801 kb on + strand at 718.802 kb on - strand at 718.802 kb on - strand at 718.802 kb on - strand at 718.805 kb on + strand at 718.805 kb on + strand at 718.805 kb on + strand at 718.806 kb on - strand at 718.806 kb on - strand at 718.806 kb on - strand at 718.806 kb on - strand at 718.806 kb on - strand at 718.806 kb on - strand at 718.832 kb on + strand at 718.832 kb on + strand at 718.832 kb on + strand at 718.832 kb on + strand at 718.832 kb on + strand at 718.833 kb on - strand at 718.833 kb on - strand at 718.833 kb on - strand at 718.913 kb on + strand at 718.913 kb on + strand at 718.998 kb on - strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.174 kb on + strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.175 kb on - strand, within Psyr_0629 at 719.261 kb on + strand, within Psyr_0629
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 716,003 + -0.9 716,003 + -0.5 716,004 - +1.0 716,004 - -0.2 716,035 + -0.7 716,035 + -2.1 716,036 - -1.7 716,036 - -1.1 716,049 + -1.5 716,102 + -0.5 716,102 + -0.5 716,103 - +0.7 716,269 + Psyr_0627 0.18 +1.2 716,269 + Psyr_0627 0.18 -0.2 716,270 - Psyr_0627 0.18 +1.3 716,270 - Psyr_0627 0.18 +0.4 716,270 - Psyr_0627 0.18 -1.4 716,270 - Psyr_0627 0.18 +0.9 716,270 - Psyr_0627 0.18 -0.5 716,327 + Psyr_0627 0.25 -2.1 716,327 + Psyr_0627 0.25 -1.1 716,327 + Psyr_0627 0.25 +1.4 716,328 - Psyr_0627 0.25 -1.7 716,328 - Psyr_0627 0.25 -0.3 716,328 - Psyr_0627 0.25 +1.6 716,328 - Psyr_0627 0.25 +2.5 716,328 - Psyr_0627 0.25 -0.1 716,328 - Psyr_0627 0.25 -1.9 716,368 + Psyr_0627 0.29 -1.3 716,368 + Psyr_0627 0.29 -0.0 716,368 + Psyr_0627 0.29 +0.9 716,368 + Psyr_0627 0.29 +0.5 716,369 - Psyr_0627 0.30 +1.9 716,369 - Psyr_0627 0.30 -1.7 716,369 - Psyr_0627 0.30 +1.0 716,369 - Psyr_0627 0.30 -1.5 716,369 - Psyr_0627 0.30 -2.4 716,377 + Psyr_0627 0.31 -1.6 716,377 + Psyr_0627 0.31 +3.5 716,377 + Psyr_0627 0.31 -0.2 716,377 + Psyr_0627 0.31 +1.6 716,378 - Psyr_0627 0.31 -0.7 716,611 - Psyr_0627 0.58 -2.1 716,611 - Psyr_0627 0.58 -0.7 716,648 - Psyr_0627 0.62 -2.7 716,710 + Psyr_0627 0.70 -2.2 716,710 + Psyr_0627 0.70 +1.2 716,710 + Psyr_0627 0.70 +0.7 716,710 + Psyr_0627 0.70 -0.1 716,710 + Psyr_0627 0.70 -0.0 716,710 + Psyr_0627 0.70 +0.3 716,710 + Psyr_0627 0.70 +1.8 716,710 + Psyr_0627 0.70 +0.7 716,711 - Psyr_0627 0.70 +2.0 716,711 - Psyr_0627 0.70 +0.1 716,711 - Psyr_0627 0.70 -1.5 716,955 + +1.9 716,955 + -0.1 716,955 + +2.5 716,955 + -0.8 716,956 - -0.3 716,956 - +0.9 716,956 - +0.9 716,956 - -3.2 716,956 - -0.1 716,956 - +0.5 716,984 + -0.1 716,984 + -1.1 716,984 + -2.4 716,984 + -1.2 716,984 + +1.3 716,984 + +3.4 716,984 + +0.3 716,984 + -1.3 716,985 - +1.2 716,985 - +0.3 716,985 - -0.1 716,985 - -2.6 717,088 - +0.3 717,156 + Psyr_0628 0.13 -0.9 717,156 + Psyr_0628 0.13 +1.0 717,156 + Psyr_0628 0.13 -2.5 717,157 - Psyr_0628 0.13 +1.0 717,157 - Psyr_0628 0.13 -0.5 717,274 - Psyr_0628 0.21 -0.4 717,360 + Psyr_0628 0.27 +0.1 717,360 + Psyr_0628 0.27 +1.7 717,360 + Psyr_0628 0.27 -1.1 717,361 - Psyr_0628 0.27 -3.9 717,361 - Psyr_0628 0.27 -1.8 717,361 - Psyr_0628 0.27 +2.5 717,361 - Psyr_0628 0.27 +1.6 717,433 - Psyr_0628 0.33 -0.4 717,513 + Psyr_0628 0.38 +1.1 717,513 + Psyr_0628 0.38 +2.5 717,513 + Psyr_0628 0.38 -0.1 717,514 - Psyr_0628 0.38 +0.1 717,514 - Psyr_0628 0.38 +2.2 717,565 - Psyr_0628 0.42 +2.2 717,716 + Psyr_0628 0.53 +0.0 717,716 + Psyr_0628 0.53 -2.7 717,717 - Psyr_0628 0.53 -0.3 717,823 - Psyr_0628 0.61 -2.6 718,211 - Psyr_0628 0.88 +0.2 718,275 + -0.1 718,276 - -1.8 718,372 + +1.5 718,452 + -0.1 718,466 + -0.1 718,466 + +0.9 718,466 + -0.5 718,466 + -0.8 718,467 - +0.0 718,467 - -1.8 718,467 - +0.6 718,474 + -1.3 718,474 + -1.2 718,474 + -1.2 718,474 + -0.6 718,474 + -1.5 718,475 - -1.3 718,475 - -3.1 718,475 - -2.3 718,475 - -1.3 718,477 + +6.7 718,477 + +0.4 718,477 + -1.8 718,478 - +1.1 718,537 + +1.5 718,537 + +0.6 718,537 + -2.3 718,537 + +0.1 718,538 - -3.1 718,538 - -2.3 718,538 - -0.1 718,538 - +1.1 718,538 - +1.1 718,538 - -2.2 718,538 - +0.9 718,538 - -2.3 718,538 - -0.8 718,538 - +0.5 718,612 + -1.3 718,626 - +1.9 718,628 - -0.1 718,628 - -0.2 718,628 - +1.2 718,628 - +1.3 718,628 - -2.3 718,628 - +0.5 718,628 - -2.9 718,628 - +2.3 718,628 - -1.8 718,693 - -1.3 718,693 - -2.7 718,709 + +0.5 718,710 - +0.5 718,722 - +1.3 718,722 - +2.0 718,763 + -1.9 718,764 - +1.6 718,801 + +0.4 718,801 + +1.7 718,802 - -1.3 718,802 - +1.5 718,802 - -2.4 718,805 + -0.4 718,805 + -1.8 718,805 + -0.1 718,806 - -0.2 718,806 - +1.1 718,806 - +0.9 718,806 - -1.9 718,806 - -1.8 718,806 - +1.0 718,832 + +0.2 718,832 + -2.6 718,832 + -1.5 718,832 + +0.1 718,832 + -0.3 718,833 - +0.2 718,833 - +1.3 718,833 - -1.8 718,913 + +0.3 718,913 + +0.9 718,998 - Psyr_0629 0.13 +1.9 719,174 + Psyr_0629 0.24 +1.0 719,174 + Psyr_0629 0.24 -2.9 719,174 + Psyr_0629 0.24 +1.1 719,174 + Psyr_0629 0.24 -1.0 719,174 + Psyr_0629 0.24 +0.3 719,174 + Psyr_0629 0.24 -0.2 719,174 + Psyr_0629 0.24 +2.5 719,174 + Psyr_0629 0.24 +0.7 719,174 + Psyr_0629 0.24 +1.0 719,174 + Psyr_0629 0.24 -1.4 719,174 + Psyr_0629 0.24 +4.6 719,174 + Psyr_0629 0.24 +1.5 719,175 - Psyr_0629 0.24 +0.3 719,175 - Psyr_0629 0.24 -0.5 719,175 - Psyr_0629 0.24 -1.1 719,175 - Psyr_0629 0.24 -1.9 719,175 - Psyr_0629 0.24 +0.2 719,175 - Psyr_0629 0.24 -1.4 719,175 - Psyr_0629 0.24 -0.9 719,175 - Psyr_0629 0.24 +1.5 719,261 + Psyr_0629 0.30 -0.6
Or see this region's nucleotide sequence