Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0607 and Psyr_0608 are separated by 79 nucleotides Psyr_0608 and Psyr_0609 are separated by 202 nucleotides
Psyr_0607: Psyr_0607 - cystathionine beta-lyase, at 696,911 to 698,077
_0607
Psyr_0608: Psyr_0608 - Protein of unknown function DUF1016, at 698,157 to 699,173
_0608
Psyr_0609: Psyr_0609 - Glutathione S-transferase, C-terminal, at 699,376 to 700,218
_0609
Position (kb) 698
699
700 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 697.206 kb on + strand, within Psyr_0607 at 697.206 kb on + strand, within Psyr_0607 at 697.320 kb on + strand, within Psyr_0607 at 697.320 kb on + strand, within Psyr_0607 at 697.343 kb on - strand, within Psyr_0607 at 697.343 kb on - strand, within Psyr_0607 at 697.375 kb on + strand, within Psyr_0607 at 697.437 kb on + strand, within Psyr_0607 at 697.437 kb on + strand, within Psyr_0607 at 697.438 kb on - strand, within Psyr_0607 at 697.438 kb on - strand, within Psyr_0607 at 697.438 kb on - strand, within Psyr_0607 at 697.438 kb on - strand, within Psyr_0607 at 697.488 kb on + strand, within Psyr_0607 at 697.488 kb on + strand, within Psyr_0607 at 697.488 kb on + strand, within Psyr_0607 at 697.488 kb on + strand, within Psyr_0607 at 697.488 kb on + strand, within Psyr_0607 at 697.488 kb on + strand, within Psyr_0607 at 697.488 kb on + strand, within Psyr_0607 at 697.489 kb on - strand, within Psyr_0607 at 697.489 kb on - strand, within Psyr_0607 at 697.489 kb on - strand, within Psyr_0607 at 697.608 kb on + strand, within Psyr_0607 at 697.608 kb on + strand, within Psyr_0607 at 697.608 kb on + strand, within Psyr_0607 at 697.608 kb on + strand, within Psyr_0607 at 697.608 kb on + strand, within Psyr_0607 at 697.609 kb on - strand, within Psyr_0607 at 697.609 kb on - strand, within Psyr_0607 at 697.609 kb on - strand, within Psyr_0607 at 697.609 kb on - strand, within Psyr_0607 at 697.609 kb on - strand, within Psyr_0607 at 697.609 kb on - strand, within Psyr_0607 at 697.649 kb on - strand, within Psyr_0607 at 697.665 kb on + strand, within Psyr_0607 at 697.666 kb on - strand, within Psyr_0607 at 697.728 kb on + strand, within Psyr_0607 at 697.728 kb on + strand, within Psyr_0607 at 697.728 kb on + strand, within Psyr_0607 at 697.729 kb on - strand, within Psyr_0607 at 697.894 kb on - strand, within Psyr_0607 at 697.969 kb on + strand at 697.969 kb on + strand at 697.969 kb on + strand at 698.132 kb on + strand at 698.132 kb on + strand at 698.133 kb on - strand at 698.133 kb on - strand at 698.155 kb on + strand at 698.155 kb on + strand at 698.155 kb on + strand at 698.185 kb on + strand at 698.211 kb on + strand at 698.212 kb on - strand at 698.212 kb on - strand at 698.281 kb on + strand, within Psyr_0608 at 698.282 kb on - strand, within Psyr_0608 at 698.317 kb on - strand, within Psyr_0608 at 698.317 kb on - strand, within Psyr_0608 at 698.317 kb on - strand, within Psyr_0608 at 698.317 kb on - strand, within Psyr_0608 at 698.317 kb on - strand, within Psyr_0608 at 698.377 kb on + strand, within Psyr_0608 at 698.377 kb on + strand, within Psyr_0608 at 698.377 kb on + strand, within Psyr_0608 at 698.399 kb on - strand, within Psyr_0608 at 698.541 kb on + strand, within Psyr_0608 at 698.542 kb on - strand, within Psyr_0608 at 698.633 kb on + strand, within Psyr_0608 at 698.633 kb on + strand, within Psyr_0608 at 698.634 kb on - strand, within Psyr_0608 at 698.634 kb on - strand, within Psyr_0608 at 698.634 kb on - strand, within Psyr_0608 at 698.634 kb on - strand, within Psyr_0608 at 698.634 kb on - strand, within Psyr_0608 at 698.634 kb on - strand, within Psyr_0608 at 698.635 kb on + strand, within Psyr_0608 at 698.635 kb on + strand, within Psyr_0608 at 698.635 kb on + strand, within Psyr_0608 at 698.635 kb on + strand, within Psyr_0608 at 698.635 kb on + strand, within Psyr_0608 at 698.635 kb on + strand, within Psyr_0608 at 698.635 kb on + strand, within Psyr_0608 at 698.635 kb on + strand, within Psyr_0608 at 698.635 kb on + strand, within Psyr_0608 at 698.635 kb on + strand, within Psyr_0608 at 698.635 kb on + strand, within Psyr_0608 at 698.635 kb on + strand, within Psyr_0608 at 698.635 kb on + strand, within Psyr_0608 at 698.636 kb on - strand, within Psyr_0608 at 698.636 kb on - strand, within Psyr_0608 at 698.636 kb on - strand, within Psyr_0608 at 698.636 kb on - strand, within Psyr_0608 at 698.636 kb on - strand, within Psyr_0608 at 698.636 kb on - strand, within Psyr_0608 at 698.636 kb on - strand, within Psyr_0608 at 698.649 kb on + strand, within Psyr_0608 at 698.649 kb on + strand, within Psyr_0608 at 698.649 kb on + strand, within Psyr_0608 at 698.649 kb on + strand, within Psyr_0608 at 698.649 kb on + strand, within Psyr_0608 at 698.649 kb on + strand, within Psyr_0608 at 698.649 kb on + strand, within Psyr_0608 at 698.650 kb on - strand, within Psyr_0608 at 698.650 kb on - strand, within Psyr_0608 at 698.650 kb on - strand, within Psyr_0608 at 698.650 kb on - strand, within Psyr_0608 at 698.650 kb on - strand, within Psyr_0608 at 698.651 kb on + strand, within Psyr_0608 at 698.651 kb on + strand, within Psyr_0608 at 698.652 kb on - strand, within Psyr_0608 at 698.652 kb on - strand, within Psyr_0608 at 698.652 kb on - strand, within Psyr_0608 at 698.724 kb on + strand, within Psyr_0608 at 698.840 kb on + strand, within Psyr_0608 at 698.840 kb on + strand, within Psyr_0608 at 698.840 kb on + strand, within Psyr_0608 at 698.840 kb on + strand, within Psyr_0608 at 698.840 kb on + strand, within Psyr_0608 at 698.840 kb on + strand, within Psyr_0608 at 698.841 kb on - strand, within Psyr_0608 at 698.841 kb on - strand, within Psyr_0608 at 698.853 kb on + strand, within Psyr_0608 at 698.854 kb on - strand, within Psyr_0608 at 698.854 kb on - strand, within Psyr_0608 at 698.894 kb on - strand, within Psyr_0608 at 698.903 kb on - strand, within Psyr_0608 at 699.034 kb on + strand, within Psyr_0608 at 699.034 kb on + strand, within Psyr_0608 at 699.034 kb on + strand, within Psyr_0608 at 699.035 kb on - strand, within Psyr_0608 at 699.035 kb on - strand, within Psyr_0608 at 699.035 kb on - strand, within Psyr_0608 at 699.035 kb on - strand, within Psyr_0608 at 699.053 kb on - strand, within Psyr_0608 at 699.141 kb on + strand at 699.141 kb on + strand at 699.141 kb on + strand at 699.141 kb on + strand at 699.141 kb on + strand at 699.141 kb on + strand at 699.142 kb on - strand at 699.142 kb on - strand at 699.142 kb on - strand at 699.142 kb on - strand at 699.142 kb on - strand at 699.142 kb on - strand at 699.167 kb on + strand at 699.168 kb on - strand at 699.174 kb on - strand at 699.182 kb on + strand at 699.182 kb on + strand at 699.182 kb on + strand at 699.183 kb on - strand at 699.183 kb on - strand at 699.251 kb on - strand at 699.290 kb on + strand at 699.290 kb on + strand at 699.290 kb on + strand at 699.290 kb on + strand at 699.290 kb on + strand at 699.290 kb on + strand at 699.290 kb on + strand at 699.290 kb on + strand at 699.291 kb on - strand at 699.291 kb on - strand at 699.291 kb on - strand at 699.291 kb on - strand at 699.291 kb on - strand at 699.291 kb on - strand at 699.336 kb on + strand at 699.336 kb on + strand at 699.336 kb on + strand at 699.336 kb on + strand at 699.336 kb on + strand at 699.337 kb on - strand at 699.337 kb on - strand at 699.337 kb on - strand at 699.337 kb on - strand at 699.337 kb on - strand at 699.377 kb on + strand at 699.377 kb on + strand at 699.377 kb on + strand at 699.377 kb on + strand at 699.377 kb on + strand at 699.377 kb on + strand at 699.377 kb on + strand at 699.377 kb on + strand at 699.377 kb on + strand at 699.377 kb on + strand at 699.378 kb on - strand at 699.378 kb on - strand at 699.378 kb on - strand at 699.378 kb on - strand at 699.378 kb on - strand at 699.378 kb on - strand at 699.378 kb on - strand at 699.378 kb on - strand at 699.378 kb on - strand at 699.378 kb on - strand at 699.378 kb on - strand at 699.378 kb on - strand at 699.545 kb on + strand, within Psyr_0609 at 699.546 kb on - strand, within Psyr_0609 at 699.546 kb on - strand, within Psyr_0609 at 699.572 kb on + strand, within Psyr_0609 at 699.605 kb on + strand, within Psyr_0609 at 699.605 kb on + strand, within Psyr_0609 at 699.605 kb on + strand, within Psyr_0609 at 699.606 kb on - strand, within Psyr_0609 at 699.606 kb on - strand, within Psyr_0609 at 699.606 kb on - strand, within Psyr_0609 at 699.698 kb on + strand, within Psyr_0609 at 699.719 kb on + strand, within Psyr_0609 at 699.720 kb on - strand, within Psyr_0609 at 699.725 kb on + strand, within Psyr_0609 at 699.725 kb on + strand, within Psyr_0609 at 699.725 kb on + strand, within Psyr_0609 at 699.725 kb on + strand, within Psyr_0609 at 699.725 kb on + strand, within Psyr_0609 at 699.725 kb on + strand, within Psyr_0609 at 699.725 kb on + strand, within Psyr_0609 at 699.725 kb on + strand, within Psyr_0609 at 699.726 kb on - strand, within Psyr_0609 at 699.752 kb on + strand, within Psyr_0609 at 699.848 kb on + strand, within Psyr_0609 at 699.848 kb on + strand, within Psyr_0609 at 699.858 kb on + strand, within Psyr_0609 at 699.975 kb on + strand, within Psyr_0609 at 699.975 kb on + strand, within Psyr_0609 at 699.976 kb on - strand, within Psyr_0609 at 699.976 kb on - strand, within Psyr_0609 at 699.995 kb on + strand, within Psyr_0609 at 699.995 kb on + strand, within Psyr_0609 at 700.076 kb on + strand, within Psyr_0609 at 700.076 kb on + strand, within Psyr_0609 at 700.077 kb on - strand, within Psyr_0609 at 700.077 kb on - strand, within Psyr_0609 at 700.077 kb on - strand, within Psyr_0609
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 697,206 + Psyr_0607 0.25 -1.1 697,206 + Psyr_0607 0.25 +1.5 697,320 + Psyr_0607 0.35 -1.7 697,320 + Psyr_0607 0.35 -3.6 697,343 - Psyr_0607 0.37 -0.1 697,343 - Psyr_0607 0.37 -3.1 697,375 + Psyr_0607 0.40 +0.3 697,437 + Psyr_0607 0.45 +0.5 697,437 + Psyr_0607 0.45 +0.6 697,438 - Psyr_0607 0.45 -0.3 697,438 - Psyr_0607 0.45 -0.1 697,438 - Psyr_0607 0.45 -1.1 697,438 - Psyr_0607 0.45 -1.6 697,488 + Psyr_0607 0.49 -0.1 697,488 + Psyr_0607 0.49 +0.3 697,488 + Psyr_0607 0.49 +0.6 697,488 + Psyr_0607 0.49 -3.7 697,488 + Psyr_0607 0.49 -1.3 697,488 + Psyr_0607 0.49 +0.5 697,488 + Psyr_0607 0.49 -0.8 697,489 - Psyr_0607 0.50 -1.3 697,489 - Psyr_0607 0.50 -1.1 697,489 - Psyr_0607 0.50 -0.2 697,608 + Psyr_0607 0.60 +1.4 697,608 + Psyr_0607 0.60 +0.6 697,608 + Psyr_0607 0.60 -1.6 697,608 + Psyr_0607 0.60 +1.9 697,608 + Psyr_0607 0.60 +0.9 697,609 - Psyr_0607 0.60 -1.6 697,609 - Psyr_0607 0.60 -0.5 697,609 - Psyr_0607 0.60 +0.6 697,609 - Psyr_0607 0.60 -1.3 697,609 - Psyr_0607 0.60 +0.8 697,609 - Psyr_0607 0.60 -3.4 697,649 - Psyr_0607 0.63 -2.5 697,665 + Psyr_0607 0.65 -0.3 697,666 - Psyr_0607 0.65 -5.2 697,728 + Psyr_0607 0.70 -0.0 697,728 + Psyr_0607 0.70 +0.8 697,728 + Psyr_0607 0.70 +0.5 697,729 - Psyr_0607 0.70 -1.9 697,894 - Psyr_0607 0.84 +1.7 697,969 + -2.1 697,969 + -2.7 697,969 + +0.8 698,132 + +0.0 698,132 + +2.0 698,133 - +0.6 698,133 - +0.5 698,155 + -0.5 698,155 + -0.5 698,155 + +0.8 698,185 + -1.8 698,211 + -1.8 698,212 - +1.4 698,212 - +1.9 698,281 + Psyr_0608 0.12 -0.5 698,282 - Psyr_0608 0.12 -0.2 698,317 - Psyr_0608 0.16 +0.6 698,317 - Psyr_0608 0.16 -0.1 698,317 - Psyr_0608 0.16 -1.1 698,317 - Psyr_0608 0.16 -0.5 698,317 - Psyr_0608 0.16 -1.1 698,377 + Psyr_0608 0.22 +0.5 698,377 + Psyr_0608 0.22 +0.5 698,377 + Psyr_0608 0.22 -1.4 698,399 - Psyr_0608 0.24 +0.6 698,541 + Psyr_0608 0.38 -1.9 698,542 - Psyr_0608 0.38 +2.0 698,633 + Psyr_0608 0.47 +0.7 698,633 + Psyr_0608 0.47 -1.0 698,634 - Psyr_0608 0.47 -0.5 698,634 - Psyr_0608 0.47 -2.3 698,634 - Psyr_0608 0.47 +1.5 698,634 - Psyr_0608 0.47 +2.7 698,634 - Psyr_0608 0.47 +0.6 698,634 - Psyr_0608 0.47 +1.1 698,635 + Psyr_0608 0.47 +0.8 698,635 + Psyr_0608 0.47 +0.4 698,635 + Psyr_0608 0.47 -0.1 698,635 + Psyr_0608 0.47 +0.3 698,635 + Psyr_0608 0.47 -0.1 698,635 + Psyr_0608 0.47 -0.5 698,635 + Psyr_0608 0.47 -2.7 698,635 + Psyr_0608 0.47 -1.6 698,635 + Psyr_0608 0.47 -0.9 698,635 + Psyr_0608 0.47 -1.7 698,635 + Psyr_0608 0.47 -1.1 698,635 + Psyr_0608 0.47 -1.8 698,635 + Psyr_0608 0.47 -1.0 698,636 - Psyr_0608 0.47 -1.0 698,636 - Psyr_0608 0.47 -0.1 698,636 - Psyr_0608 0.47 +0.6 698,636 - Psyr_0608 0.47 +0.5 698,636 - Psyr_0608 0.47 +0.2 698,636 - Psyr_0608 0.47 -0.3 698,636 - Psyr_0608 0.47 -1.5 698,649 + Psyr_0608 0.48 +0.9 698,649 + Psyr_0608 0.48 -0.4 698,649 + Psyr_0608 0.48 -1.9 698,649 + Psyr_0608 0.48 +0.2 698,649 + Psyr_0608 0.48 +2.3 698,649 + Psyr_0608 0.48 +0.5 698,649 + Psyr_0608 0.48 +1.0 698,650 - Psyr_0608 0.48 -0.5 698,650 - Psyr_0608 0.48 +2.9 698,650 - Psyr_0608 0.48 -0.6 698,650 - Psyr_0608 0.48 -0.9 698,650 - Psyr_0608 0.48 -1.5 698,651 + Psyr_0608 0.49 -1.1 698,651 + Psyr_0608 0.49 +2.8 698,652 - Psyr_0608 0.49 -2.1 698,652 - Psyr_0608 0.49 +0.6 698,652 - Psyr_0608 0.49 -1.0 698,724 + Psyr_0608 0.56 +0.3 698,840 + Psyr_0608 0.67 -1.4 698,840 + Psyr_0608 0.67 -3.1 698,840 + Psyr_0608 0.67 -0.8 698,840 + Psyr_0608 0.67 +0.1 698,840 + Psyr_0608 0.67 +3.1 698,840 + Psyr_0608 0.67 +0.9 698,841 - Psyr_0608 0.67 -2.2 698,841 - Psyr_0608 0.67 +0.1 698,853 + Psyr_0608 0.68 -0.5 698,854 - Psyr_0608 0.69 -0.1 698,854 - Psyr_0608 0.69 -0.3 698,894 - Psyr_0608 0.72 +0.6 698,903 - Psyr_0608 0.73 +0.3 699,034 + Psyr_0608 0.86 -2.6 699,034 + Psyr_0608 0.86 +0.9 699,034 + Psyr_0608 0.86 +0.2 699,035 - Psyr_0608 0.86 -1.4 699,035 - Psyr_0608 0.86 +0.1 699,035 - Psyr_0608 0.86 +1.5 699,035 - Psyr_0608 0.86 +0.2 699,053 - Psyr_0608 0.88 -0.5 699,141 + -1.1 699,141 + +0.5 699,141 + -3.0 699,141 + -3.1 699,141 + -2.6 699,141 + -1.8 699,142 - +0.4 699,142 - +0.3 699,142 - -1.6 699,142 - -2.2 699,142 - -0.6 699,142 - +1.4 699,167 + -1.5 699,168 - +1.6 699,174 - +1.1 699,182 + -0.9 699,182 + +1.4 699,182 + -3.2 699,183 - +1.8 699,183 - -0.5 699,251 - -0.6 699,290 + +0.5 699,290 + +0.5 699,290 + +0.4 699,290 + -0.6 699,290 + -0.8 699,290 + +1.7 699,290 + +0.3 699,290 + +1.1 699,291 - +0.3 699,291 - -3.9 699,291 - +3.8 699,291 - -0.1 699,291 - -0.5 699,291 - -3.6 699,336 + -1.1 699,336 + +0.7 699,336 + +0.6 699,336 + +1.5 699,336 + +0.3 699,337 - -0.7 699,337 - -0.1 699,337 - -1.4 699,337 - -1.9 699,337 - -1.3 699,377 + -3.1 699,377 + -0.1 699,377 + +1.9 699,377 + +1.5 699,377 + +2.8 699,377 + -2.5 699,377 + -2.2 699,377 + -3.2 699,377 + +1.4 699,377 + -2.1 699,378 - +0.4 699,378 - -0.9 699,378 - +1.5 699,378 - -0.7 699,378 - +0.1 699,378 - +1.3 699,378 - -0.9 699,378 - +2.5 699,378 - -2.9 699,378 - -1.5 699,378 - -1.3 699,378 - +0.1 699,545 + Psyr_0609 0.20 -0.7 699,546 - Psyr_0609 0.20 +0.1 699,546 - Psyr_0609 0.20 -1.3 699,572 + Psyr_0609 0.23 +0.1 699,605 + Psyr_0609 0.27 +0.7 699,605 + Psyr_0609 0.27 +0.8 699,605 + Psyr_0609 0.27 -1.1 699,606 - Psyr_0609 0.27 -2.6 699,606 - Psyr_0609 0.27 -2.9 699,606 - Psyr_0609 0.27 +0.2 699,698 + Psyr_0609 0.38 +0.5 699,719 + Psyr_0609 0.41 -2.5 699,720 - Psyr_0609 0.41 -0.3 699,725 + Psyr_0609 0.41 +1.1 699,725 + Psyr_0609 0.41 +0.5 699,725 + Psyr_0609 0.41 -0.5 699,725 + Psyr_0609 0.41 +1.9 699,725 + Psyr_0609 0.41 -1.1 699,725 + Psyr_0609 0.41 +1.2 699,725 + Psyr_0609 0.41 -2.3 699,725 + Psyr_0609 0.41 +0.2 699,726 - Psyr_0609 0.42 +1.6 699,752 + Psyr_0609 0.45 +0.9 699,848 + Psyr_0609 0.56 -2.6 699,848 + Psyr_0609 0.56 -0.5 699,858 + Psyr_0609 0.57 +0.2 699,975 + Psyr_0609 0.71 -0.2 699,975 + Psyr_0609 0.71 -3.3 699,976 - Psyr_0609 0.71 -2.9 699,976 - Psyr_0609 0.71 +0.4 699,995 + Psyr_0609 0.73 +0.6 699,995 + Psyr_0609 0.73 -0.5 700,076 + Psyr_0609 0.83 -2.4 700,076 + Psyr_0609 0.83 -1.6 700,077 - Psyr_0609 0.83 -3.4 700,077 - Psyr_0609 0.83 -2.5 700,077 - Psyr_0609 0.83 -2.7
Or see this region's nucleotide sequence