Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0577 and Psyr_0578 are separated by 171 nucleotides Psyr_0578 and Psyr_RNA2 are separated by 106 nucleotides Psyr_RNA2 and Psyr_RNA3 are separated by 160 nucleotides Psyr_RNA3 and Psyr_0579 are separated by 225 nucleotides
Psyr_0577: Psyr_0577 - Adenylosuccinate synthetase, at 655,874 to 657,166
_0577
Psyr_0578: Psyr_0578 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 657,338 to 659,272
_0578
Psyr_RNA2: Psyr_RNA2 - tRNA-Leu, at 659,379 to 659,465
_RNA2
Psyr_RNA3: Psyr_RNA3 - tRNA-Leu, at 659,626 to 659,712
_RNA3
Psyr_0579: Psyr_0579 - RNAse R, at 659,938 to 662,571
_0579
Position (kb) 657
658
659
660 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 657.167 kb on + strand at 657.167 kb on + strand at 657.167 kb on + strand at 657.167 kb on + strand at 657.168 kb on - strand at 657.168 kb on - strand at 657.278 kb on + strand at 657.278 kb on + strand at 657.278 kb on + strand at 657.279 kb on - strand at 657.279 kb on - strand at 657.279 kb on - strand at 657.351 kb on + strand at 657.351 kb on + strand at 657.351 kb on + strand at 657.351 kb on + strand at 657.352 kb on - strand at 657.352 kb on - strand at 657.352 kb on - strand at 657.352 kb on - strand at 657.352 kb on - strand at 657.352 kb on - strand at 657.352 kb on - strand at 657.352 kb on - strand at 657.352 kb on - strand at 657.352 kb on - strand at 657.352 kb on - strand at 657.493 kb on - strand at 657.602 kb on - strand, within Psyr_0578 at 657.774 kb on + strand, within Psyr_0578 at 657.774 kb on + strand, within Psyr_0578 at 657.774 kb on + strand, within Psyr_0578 at 657.775 kb on - strand, within Psyr_0578 at 657.775 kb on - strand, within Psyr_0578 at 657.775 kb on - strand, within Psyr_0578 at 657.775 kb on - strand, within Psyr_0578 at 657.775 kb on - strand, within Psyr_0578 at 657.775 kb on - strand, within Psyr_0578 at 657.775 kb on - strand, within Psyr_0578 at 657.775 kb on - strand, within Psyr_0578 at 657.775 kb on - strand, within Psyr_0578 at 657.775 kb on - strand, within Psyr_0578 at 657.775 kb on - strand, within Psyr_0578 at 657.788 kb on + strand, within Psyr_0578 at 657.814 kb on + strand, within Psyr_0578 at 657.815 kb on - strand, within Psyr_0578 at 657.821 kb on + strand, within Psyr_0578 at 657.822 kb on - strand, within Psyr_0578 at 657.822 kb on - strand, within Psyr_0578 at 657.822 kb on - strand, within Psyr_0578 at 657.822 kb on - strand, within Psyr_0578 at 657.822 kb on - strand, within Psyr_0578 at 657.926 kb on + strand, within Psyr_0578 at 657.926 kb on + strand, within Psyr_0578 at 657.926 kb on + strand, within Psyr_0578 at 657.927 kb on - strand, within Psyr_0578 at 657.927 kb on - strand, within Psyr_0578 at 657.927 kb on - strand, within Psyr_0578 at 657.927 kb on - strand, within Psyr_0578 at 657.927 kb on - strand, within Psyr_0578 at 657.927 kb on - strand, within Psyr_0578 at 657.927 kb on - strand, within Psyr_0578 at 657.927 kb on - strand, within Psyr_0578 at 657.929 kb on + strand, within Psyr_0578 at 657.930 kb on - strand, within Psyr_0578 at 657.930 kb on - strand, within Psyr_0578 at 657.930 kb on - strand, within Psyr_0578 at 657.930 kb on - strand, within Psyr_0578 at 657.987 kb on + strand, within Psyr_0578 at 657.988 kb on - strand, within Psyr_0578 at 658.245 kb on + strand, within Psyr_0578 at 658.245 kb on + strand, within Psyr_0578 at 658.246 kb on - strand, within Psyr_0578 at 658.255 kb on - strand, within Psyr_0578 at 658.387 kb on + strand, within Psyr_0578 at 658.387 kb on + strand, within Psyr_0578 at 658.388 kb on - strand, within Psyr_0578 at 658.388 kb on - strand, within Psyr_0578 at 658.388 kb on - strand, within Psyr_0578 at 658.388 kb on - strand, within Psyr_0578 at 658.388 kb on - strand, within Psyr_0578 at 658.388 kb on - strand, within Psyr_0578 at 658.429 kb on + strand, within Psyr_0578 at 658.430 kb on - strand, within Psyr_0578 at 658.660 kb on + strand, within Psyr_0578 at 658.661 kb on - strand, within Psyr_0578 at 658.661 kb on - strand, within Psyr_0578 at 658.786 kb on + strand, within Psyr_0578 at 658.825 kb on + strand, within Psyr_0578 at 658.826 kb on - strand, within Psyr_0578 at 658.924 kb on + strand, within Psyr_0578 at 658.924 kb on + strand, within Psyr_0578 at 659.019 kb on + strand, within Psyr_0578 at 659.020 kb on - strand, within Psyr_0578 at 659.482 kb on - strand at 659.502 kb on + strand at 659.502 kb on + strand at 659.504 kb on + strand at 659.505 kb on - strand at 659.505 kb on - strand at 659.525 kb on + strand at 659.543 kb on + strand at 659.543 kb on + strand at 659.543 kb on + strand at 659.544 kb on - strand at 659.547 kb on - strand at 659.610 kb on - strand at 659.610 kb on - strand at 659.610 kb on - strand at 659.610 kb on - strand at 659.615 kb on - strand at 659.615 kb on - strand at 659.615 kb on - strand at 659.750 kb on - strand at 659.751 kb on + strand at 659.751 kb on + strand at 659.752 kb on - strand at 659.765 kb on + strand at 659.765 kb on + strand at 659.765 kb on + strand at 659.765 kb on + strand at 659.766 kb on - strand at 659.766 kb on - strand at 659.766 kb on - strand at 659.766 kb on - strand at 659.895 kb on + strand at 659.895 kb on + strand at 659.895 kb on + strand at 659.896 kb on - strand at 659.896 kb on - strand at 659.906 kb on - strand at 659.912 kb on + strand at 659.912 kb on + strand at 659.912 kb on + strand at 659.913 kb on - strand at 659.913 kb on - strand at 659.913 kb on - strand at 659.914 kb on + strand at 659.914 kb on + strand at 659.914 kb on + strand at 659.914 kb on + strand at 659.914 kb on + strand at 659.914 kb on + strand at 659.914 kb on + strand at 659.915 kb on - strand at 659.915 kb on - strand at 659.915 kb on - strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.916 kb on + strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.917 kb on - strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.918 kb on + strand at 659.919 kb on - strand at 659.919 kb on - strand at 659.919 kb on - strand at 659.919 kb on - strand at 659.919 kb on - strand at 659.919 kb on - strand at 659.919 kb on - strand at 659.919 kb on - strand at 659.919 kb on - strand at 659.936 kb on + strand at 659.936 kb on + strand at 659.936 kb on + strand at 660.158 kb on - strand at 660.158 kb on - strand at 660.158 kb on - strand at 660.158 kb on - strand at 660.175 kb on + strand at 660.175 kb on + strand at 660.176 kb on - strand at 660.176 kb on - strand at 660.176 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 657,167 + +1.3 657,167 + -1.9 657,167 + +2.6 657,167 + -1.5 657,168 - +0.7 657,168 - +0.7 657,278 + -3.4 657,278 + -3.2 657,278 + +0.8 657,279 - -0.5 657,279 - -1.1 657,279 - -0.4 657,351 + +1.2 657,351 + -2.6 657,351 + +0.0 657,351 + -1.0 657,352 - -0.1 657,352 - -0.8 657,352 - -0.4 657,352 - -2.9 657,352 - -2.0 657,352 - +1.7 657,352 - +0.1 657,352 - -2.5 657,352 - -1.9 657,352 - +0.6 657,352 - -0.6 657,493 - +2.1 657,602 - Psyr_0578 0.14 +0.2 657,774 + Psyr_0578 0.23 +1.8 657,774 + Psyr_0578 0.23 +0.9 657,774 + Psyr_0578 0.23 +1.6 657,775 - Psyr_0578 0.23 +0.6 657,775 - Psyr_0578 0.23 -2.1 657,775 - Psyr_0578 0.23 +1.6 657,775 - Psyr_0578 0.23 -0.4 657,775 - Psyr_0578 0.23 +1.6 657,775 - Psyr_0578 0.23 +1.8 657,775 - Psyr_0578 0.23 -2.6 657,775 - Psyr_0578 0.23 -1.1 657,775 - Psyr_0578 0.23 -1.4 657,775 - Psyr_0578 0.23 +1.8 657,775 - Psyr_0578 0.23 +1.0 657,788 + Psyr_0578 0.23 +1.2 657,814 + Psyr_0578 0.25 +0.1 657,815 - Psyr_0578 0.25 +0.4 657,821 + Psyr_0578 0.25 -1.1 657,822 - Psyr_0578 0.25 +0.2 657,822 - Psyr_0578 0.25 +0.4 657,822 - Psyr_0578 0.25 +0.8 657,822 - Psyr_0578 0.25 +2.8 657,822 - Psyr_0578 0.25 -2.3 657,926 + Psyr_0578 0.30 -0.1 657,926 + Psyr_0578 0.30 -0.2 657,926 + Psyr_0578 0.30 -1.5 657,927 - Psyr_0578 0.30 +0.3 657,927 - Psyr_0578 0.30 +0.8 657,927 - Psyr_0578 0.30 -2.1 657,927 - Psyr_0578 0.30 +0.1 657,927 - Psyr_0578 0.30 -3.4 657,927 - Psyr_0578 0.30 +1.2 657,927 - Psyr_0578 0.30 +1.4 657,927 - Psyr_0578 0.30 +1.7 657,929 + Psyr_0578 0.31 -3.2 657,930 - Psyr_0578 0.31 +0.7 657,930 - Psyr_0578 0.31 +1.5 657,930 - Psyr_0578 0.31 +0.7 657,930 - Psyr_0578 0.31 -2.6 657,987 + Psyr_0578 0.34 -0.6 657,988 - Psyr_0578 0.34 +0.4 658,245 + Psyr_0578 0.47 +1.3 658,245 + Psyr_0578 0.47 +1.4 658,246 - Psyr_0578 0.47 +3.2 658,255 - Psyr_0578 0.47 -0.2 658,387 + Psyr_0578 0.54 -0.7 658,387 + Psyr_0578 0.54 -3.6 658,388 - Psyr_0578 0.54 -1.3 658,388 - Psyr_0578 0.54 +1.6 658,388 - Psyr_0578 0.54 -1.9 658,388 - Psyr_0578 0.54 +3.5 658,388 - Psyr_0578 0.54 +0.3 658,388 - Psyr_0578 0.54 +0.6 658,429 + Psyr_0578 0.56 -2.2 658,430 - Psyr_0578 0.56 -0.2 658,660 + Psyr_0578 0.68 -0.4 658,661 - Psyr_0578 0.68 -2.4 658,661 - Psyr_0578 0.68 +1.1 658,786 + Psyr_0578 0.75 +0.6 658,825 + Psyr_0578 0.77 -0.8 658,826 - Psyr_0578 0.77 +0.1 658,924 + Psyr_0578 0.82 +0.4 658,924 + Psyr_0578 0.82 -0.1 659,019 + Psyr_0578 0.87 -1.4 659,020 - Psyr_0578 0.87 -0.8 659,482 - +1.5 659,502 + -1.0 659,502 + -0.5 659,504 + +1.4 659,505 - -1.5 659,505 - -1.5 659,525 + -2.5 659,543 + -0.4 659,543 + +0.1 659,543 + +0.3 659,544 - -0.2 659,547 - -0.5 659,610 - +1.2 659,610 - -1.8 659,610 - +0.6 659,610 - +0.6 659,615 - +0.6 659,615 - -0.7 659,615 - -1.2 659,750 - +1.0 659,751 + +1.2 659,751 + -1.6 659,752 - -2.3 659,765 + -2.2 659,765 + -1.0 659,765 + -1.4 659,765 + +1.3 659,766 - +0.5 659,766 - +0.2 659,766 - -1.5 659,766 - +1.5 659,895 + +1.9 659,895 + -0.9 659,895 + -1.1 659,896 - -0.1 659,896 - -2.6 659,906 - -1.5 659,912 + +0.4 659,912 + +0.2 659,912 + -0.4 659,913 - -2.5 659,913 - -1.9 659,913 - -1.6 659,914 + -0.8 659,914 + +1.5 659,914 + +0.4 659,914 + +1.4 659,914 + +1.2 659,914 + -0.3 659,914 + -1.8 659,915 - -0.2 659,915 - -1.8 659,915 - -1.1 659,916 + -2.3 659,916 + +1.5 659,916 + -0.1 659,916 + -1.9 659,916 + -2.8 659,916 + +1.5 659,916 + +0.8 659,916 + +0.7 659,916 + +2.4 659,916 + -2.3 659,916 + -1.8 659,916 + -0.4 659,916 + -1.0 659,916 + +1.1 659,916 + +0.4 659,916 + -1.3 659,916 + +0.4 659,916 + +0.8 659,916 + +0.9 659,916 + -1.0 659,916 + +0.3 659,916 + +1.1 659,917 - -1.1 659,917 - -2.6 659,917 - -0.8 659,917 - -0.2 659,917 - -0.5 659,917 - -0.8 659,917 - -1.1 659,917 - +0.4 659,917 - +0.4 659,917 - -2.4 659,917 - +1.5 659,917 - -1.9 659,917 - -0.1 659,917 - +0.4 659,917 - -1.8 659,917 - +0.5 659,917 - -1.4 659,918 + +0.1 659,918 + +0.8 659,918 + -0.2 659,918 + +0.8 659,918 + +1.5 659,918 + -0.1 659,918 + -2.5 659,918 + +2.3 659,918 + +1.3 659,918 + +0.6 659,918 + +0.5 659,918 + +1.4 659,918 + +0.8 659,918 + -0.1 659,918 + -1.1 659,918 + +0.6 659,918 + +0.1 659,919 - +0.3 659,919 - -1.1 659,919 - -0.6 659,919 - -2.4 659,919 - -0.8 659,919 - -2.4 659,919 - +2.5 659,919 - -0.8 659,919 - -0.5 659,936 + +0.9 659,936 + -1.6 659,936 + -0.8 660,158 - +0.1 660,158 - -2.3 660,158 - -0.1 660,158 - -1.9 660,175 + -1.8 660,175 + -0.6 660,176 - -0.2 660,176 - +1.7 660,176 - -0.5
Or see this region's nucleotide sequence