Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS08630 and MMP_RS08635 are separated by 13 nucleotides MMP_RS08635 and MMP_RS08640 are separated by 73 nucleotides MMP_RS08640 and MMP_RS08645 are separated by 3 nucleotides
MMP_RS08630: MMP_RS08630 - archaellar assembly protein FlaJ, at 1,617,174 to 1,618,850
_RS08630
MMP_RS08635: MMP_RS08635 - UbiA family prenyltransferase, at 1,618,864 to 1,619,700
_RS08635
MMP_RS08640: MMP_RS08640 - TIM barrel protein, at 1,619,774 to 1,620,595
_RS08640
MMP_RS08645: MMP_RS08645 - UPF0179 family protein, at 1,620,599 to 1,621,036
_RS08645
Position (kb) 1618
1619
1620 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1617.880 kb on - strand, within MMP_RS08630 at 1618.006 kb on - strand, within MMP_RS08630 at 1618.007 kb on + strand, within MMP_RS08630 at 1618.007 kb on + strand, within MMP_RS08630 at 1618.010 kb on - strand, within MMP_RS08630 at 1618.010 kb on - strand, within MMP_RS08630 at 1618.234 kb on - strand, within MMP_RS08630 at 1618.290 kb on - strand, within MMP_RS08630 at 1618.301 kb on + strand, within MMP_RS08630 at 1618.590 kb on + strand, within MMP_RS08630 at 1618.670 kb on + strand, within MMP_RS08630 at 1618.765 kb on - strand at 1618.765 kb on - strand at 1618.810 kb on - strand at 1618.976 kb on - strand, within MMP_RS08635 at 1618.977 kb on + strand, within MMP_RS08635 at 1619.025 kb on + strand, within MMP_RS08635 at 1619.102 kb on - strand, within MMP_RS08635 at 1619.105 kb on + strand, within MMP_RS08635 at 1619.390 kb on + strand, within MMP_RS08635 at 1619.725 kb on + strand at 1619.728 kb on - strand at 1619.740 kb on - strand at 1619.851 kb on - strand at 1619.938 kb on - strand, within MMP_RS08640 at 1619.960 kb on - strand, within MMP_RS08640 at 1619.960 kb on - strand, within MMP_RS08640 at 1619.963 kb on - strand, within MMP_RS08640 at 1619.974 kb on + strand, within MMP_RS08640 at 1620.010 kb on - strand, within MMP_RS08640 at 1620.045 kb on - strand, within MMP_RS08640 at 1620.236 kb on + strand, within MMP_RS08640 at 1620.300 kb on - strand, within MMP_RS08640 at 1620.300 kb on - strand, within MMP_RS08640 at 1620.301 kb on + strand, within MMP_RS08640 at 1620.301 kb on + strand, within MMP_RS08640 at 1620.350 kb on + strand, within MMP_RS08640 at 1620.352 kb on + strand, within MMP_RS08640 at 1620.581 kb on - strand at 1620.591 kb on - strand at 1620.592 kb on + strand at 1620.656 kb on - strand, within MMP_RS08645 at 1620.656 kb on - strand, within MMP_RS08645 at 1620.671 kb on - strand, within MMP_RS08645 at 1620.672 kb on + strand, within MMP_RS08645 at 1620.672 kb on + strand, within MMP_RS08645 at 1620.672 kb on + strand, within MMP_RS08645
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 1,617,880 - MMP_RS08630 0.42 -0.2 1,618,006 - MMP_RS08630 0.50 +0.4 1,618,007 + MMP_RS08630 0.50 +0.1 1,618,007 + MMP_RS08630 0.50 +0.3 1,618,010 - MMP_RS08630 0.50 +0.4 1,618,010 - MMP_RS08630 0.50 -0.4 1,618,234 - MMP_RS08630 0.63 -2.9 1,618,290 - MMP_RS08630 0.67 -0.4 1,618,301 + MMP_RS08630 0.67 +2.0 1,618,590 + MMP_RS08630 0.84 -0.2 1,618,670 + MMP_RS08630 0.89 -0.4 1,618,765 - -0.0 1,618,765 - +0.2 1,618,810 - -0.1 1,618,976 - MMP_RS08635 0.13 -1.9 1,618,977 + MMP_RS08635 0.14 -1.8 1,619,025 + MMP_RS08635 0.19 -1.1 1,619,102 - MMP_RS08635 0.28 -1.4 1,619,105 + MMP_RS08635 0.29 +0.1 1,619,390 + MMP_RS08635 0.63 -2.4 1,619,725 + -2.4 1,619,728 - +1.0 1,619,740 - +0.3 1,619,851 - +0.6 1,619,938 - MMP_RS08640 0.20 +0.7 1,619,960 - MMP_RS08640 0.23 +0.3 1,619,960 - MMP_RS08640 0.23 +0.2 1,619,963 - MMP_RS08640 0.23 +0.1 1,619,974 + MMP_RS08640 0.24 +0.2 1,620,010 - MMP_RS08640 0.29 +0.1 1,620,045 - MMP_RS08640 0.33 +0.2 1,620,236 + MMP_RS08640 0.56 +0.3 1,620,300 - MMP_RS08640 0.64 -0.1 1,620,300 - MMP_RS08640 0.64 +0.0 1,620,301 + MMP_RS08640 0.64 +0.4 1,620,301 + MMP_RS08640 0.64 -0.1 1,620,350 + MMP_RS08640 0.70 -0.1 1,620,352 + MMP_RS08640 0.70 +0.3 1,620,581 - +0.0 1,620,591 - +0.2 1,620,592 + +0.7 1,620,656 - MMP_RS08645 0.13 -1.2 1,620,656 - MMP_RS08645 0.13 -1.4 1,620,671 - MMP_RS08645 0.16 +0.9 1,620,672 + MMP_RS08645 0.17 -1.4 1,620,672 + MMP_RS08645 0.17 +0.0 1,620,672 + MMP_RS08645 0.17 -1.6
Or see this region's nucleotide sequence