Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06930

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06920 and MMP_RS06925 are separated by 8 nucleotidesMMP_RS06925 and MMP_RS06930 are separated by 16 nucleotidesMMP_RS06930 and MMP_RS06935 are separated by 9 nucleotidesMMP_RS06935 and MMP_RS06940 are separated by 4 nucleotides MMP_RS06920: MMP_RS06920 - AAA family ATPase, at 1,321,087 to 1,324,068 _RS06920 MMP_RS06925: MMP_RS06925 - ribonuclease VapC4, at 1,324,077 to 1,324,472 _RS06925 MMP_RS06930: MMP_RS06930 - MBL fold metallo-hydrolase, at 1,324,489 to 1,325,289 _RS06930 MMP_RS06935: MMP_RS06935 - protease complex subunit PrcB family protein, at 1,325,299 to 1,325,775 _RS06935 MMP_RS06940: MMP_RS06940 - polyprenyl diphosphate synthase, at 1,325,780 to 1,326,574 _RS06940 Position (kb) 1324 1325 1326Strain fitness (log2 ratio) -2 -1 0 1at 1323.536 kb on - strand, within MMP_RS06920at 1323.703 kb on + strand, within MMP_RS06920at 1323.836 kb on - strandat 1324.023 kb on + strandat 1324.056 kb on + strandat 1324.087 kb on - strandat 1324.154 kb on - strand, within MMP_RS06925at 1324.161 kb on + strand, within MMP_RS06925at 1324.181 kb on + strand, within MMP_RS06925at 1324.184 kb on - strand, within MMP_RS06925at 1324.364 kb on + strand, within MMP_RS06925at 1324.461 kb on - strandat 1324.466 kb on + strandat 1324.497 kb on - strandat 1324.521 kb on - strandat 1324.587 kb on - strand, within MMP_RS06930at 1324.588 kb on + strand, within MMP_RS06930at 1324.590 kb on + strand, within MMP_RS06930at 1324.590 kb on + strand, within MMP_RS06930at 1324.634 kb on - strand, within MMP_RS06930at 1324.675 kb on - strand, within MMP_RS06930at 1324.684 kb on - strand, within MMP_RS06930at 1324.685 kb on + strand, within MMP_RS06930at 1324.777 kb on - strand, within MMP_RS06930at 1324.924 kb on - strand, within MMP_RS06930at 1324.925 kb on + strand, within MMP_RS06930at 1325.080 kb on + strand, within MMP_RS06930at 1325.081 kb on - strand, within MMP_RS06930at 1325.082 kb on + strand, within MMP_RS06930at 1325.082 kb on + strand, within MMP_RS06930at 1325.082 kb on + strand, within MMP_RS06930at 1325.103 kb on - strand, within MMP_RS06930at 1325.103 kb on - strand, within MMP_RS06930at 1325.107 kb on + strand, within MMP_RS06930at 1325.107 kb on + strand, within MMP_RS06930at 1325.107 kb on + strand, within MMP_RS06930at 1325.110 kb on - strand, within MMP_RS06930at 1325.141 kb on + strand, within MMP_RS06930at 1325.241 kb on - strandat 1325.490 kb on + strand, within MMP_RS06935at 1325.540 kb on - strand, within MMP_RS06935at 1325.540 kb on - strand, within MMP_RS06935at 1325.541 kb on + strand, within MMP_RS06935at 1325.541 kb on + strand, within MMP_RS06935at 1325.541 kb on + strand, within MMP_RS06935at 1325.632 kb on - strand, within MMP_RS06935at 1325.632 kb on - strand, within MMP_RS06935at 1325.668 kb on - strand, within MMP_RS06935at 1325.692 kb on + strand, within MMP_RS06935at 1325.760 kb on - strandat 1325.768 kb on - strandat 1325.859 kb on - strandat 1325.859 kb on - strandat 1325.860 kb on + strand, within MMP_RS06940at 1325.860 kb on + strand, within MMP_RS06940at 1325.877 kb on + strand, within MMP_RS06940at 1325.917 kb on - strand, within MMP_RS06940at 1326.284 kb on - strand, within MMP_RS06940at 1326.285 kb on + strand, within MMP_RS06940

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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1,323,536 - MMP_RS06920 0.82 +0.2
1,323,703 + MMP_RS06920 0.88 -0.7
1,323,836 - -0.2
1,324,023 + -0.6
1,324,056 + +0.5
1,324,087 - -1.1
1,324,154 - MMP_RS06925 0.19 -1.6
1,324,161 + MMP_RS06925 0.21 -0.9
1,324,181 + MMP_RS06925 0.26 -0.3
1,324,184 - MMP_RS06925 0.27 -2.2
1,324,364 + MMP_RS06925 0.72 -1.5
1,324,461 - -0.2
1,324,466 + +0.2
1,324,497 - +0.1
1,324,521 - +0.8
1,324,587 - MMP_RS06930 0.12 +0.2
1,324,588 + MMP_RS06930 0.12 +0.1
1,324,590 + MMP_RS06930 0.13 -0.5
1,324,590 + MMP_RS06930 0.13 -0.5
1,324,634 - MMP_RS06930 0.18 +0.1
1,324,675 - MMP_RS06930 0.23 -0.8
1,324,684 - MMP_RS06930 0.24 -0.6
1,324,685 + MMP_RS06930 0.24 -0.7
1,324,777 - MMP_RS06930 0.36 -0.6
1,324,924 - MMP_RS06930 0.54 -0.5
1,324,925 + MMP_RS06930 0.54 -0.3
1,325,080 + MMP_RS06930 0.74 -0.2
1,325,081 - MMP_RS06930 0.74 -0.5
1,325,082 + MMP_RS06930 0.74 +0.0
1,325,082 + MMP_RS06930 0.74 -1.0
1,325,082 + MMP_RS06930 0.74 -0.0
1,325,103 - MMP_RS06930 0.77 -1.3
1,325,103 - MMP_RS06930 0.77 -0.4
1,325,107 + MMP_RS06930 0.77 +0.1
1,325,107 + MMP_RS06930 0.77 -0.7
1,325,107 + MMP_RS06930 0.77 -0.4
1,325,110 - MMP_RS06930 0.78 -1.0
1,325,141 + MMP_RS06930 0.81 -0.5
1,325,241 - +0.0
1,325,490 + MMP_RS06935 0.40 -0.2
1,325,540 - MMP_RS06935 0.51 -0.6
1,325,540 - MMP_RS06935 0.51 -0.0
1,325,541 + MMP_RS06935 0.51 -0.3
1,325,541 + MMP_RS06935 0.51 -0.4
1,325,541 + MMP_RS06935 0.51 -0.5
1,325,632 - MMP_RS06935 0.70 +0.6
1,325,632 - MMP_RS06935 0.70 +0.5
1,325,668 - MMP_RS06935 0.77 +0.6
1,325,692 + MMP_RS06935 0.82 -0.3
1,325,760 - -0.0
1,325,768 - +0.4
1,325,859 - +0.2
1,325,859 - -0.2
1,325,860 + MMP_RS06940 0.10 -1.2
1,325,860 + MMP_RS06940 0.10 +0.2
1,325,877 + MMP_RS06940 0.12 -0.9
1,325,917 - MMP_RS06940 0.17 -0.2
1,326,284 - MMP_RS06940 0.63 -0.7
1,326,285 + MMP_RS06940 0.64 -1.1

Or see this region's nucleotide sequence