Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06715

Experiment: Formate McCas no stress control 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 2
1,287,751	-		MMP_RS06705	0.68	-1.1
1,287,829	-		MMP_RS06705	0.77	-2.0
1,287,904	+		MMP_RS06705	0.86	-1.2
1,287,904	+		MMP_RS06705	0.86	-1.5
1,288,019	+				-1.3
1,288,022	+				-2.6
1,288,067	+				-1.2
1,288,070	-				-1.8
1,288,070	-				-1.9
1,288,071	+				-1.8
1,288,071	+				-1.8
1,288,074	-				-2.0
1,288,075	+				-1.6
1,288,075	+				-1.8
1,288,075	+				-1.3
1,288,077	-				-0.9
1,288,078	+				-1.3
1,288,078	+				-2.3
1,288,079	-				-1.5
1,288,080	+				-1.4
1,288,080	+				-0.6
1,288,080	+				-1.6
1,288,081	-				-1.8
1,288,081	-				-1.4
1,288,082	+				-2.5
1,288,082	+				-1.1
1,288,082	+				-1.4
1,288,082	+				-1.8
1,288,084	-				-1.0
1,288,110	-				+0.4
1,288,121	-				+0.5
1,288,129	-				+0.2
1,288,219	+				+0.2
1,288,441	-		MMP_RS06710	0.74	-0.8
1,288,441	-		MMP_RS06710	0.74	+0.0
1,288,475	-		MMP_RS06710	0.87	-0.1
1,288,475	-		MMP_RS06710	0.87	+0.5
1,288,478	-		MMP_RS06710	0.89	-0.2
1,288,479	+		MMP_RS06710	0.89	+0.3
1,288,482	-				+0.1
1,288,483	+				+0.7
1,288,518	-				+0.2
1,288,520	-				-0.1
1,288,520	-				-0.2
1,288,521	+				-0.2
1,288,521	+				+0.8
1,288,522	-				-0.1
1,288,545	-				+0.6
1,288,568	+				+0.3
1,288,568	+				+0.3
1,288,568	+				+0.8
1,288,568	+				+0.2
1,288,569	-				-0.1
1,288,569	-				-0.1
1,288,569	-				-0.2
1,288,570	+				+0.0
1,288,570	+				-0.0
1,288,570	+				+0.2
1,288,571	-				-0.1
1,288,572	+				+0.0
1,288,572	+				-0.2
1,288,572	+				+0.1
1,288,576	-				+0.1
1,288,577	+				-0.0
1,288,577	+				+0.1
1,288,610	-				-0.4
1,288,653	-				+0.1
1,288,707	+				-0.1
1,288,707	+				-0.5
1,288,708	-				+0.3
1,288,708	-				-0.1
1,288,711	-				+0.0
1,288,712	+				-0.1
1,288,819	-				-1.4
1,288,980	+		MMP_RS06715	0.14	-1.9
1,288,986	+		MMP_RS06715	0.14	-2.0
1,289,105	+		MMP_RS06715	0.20	-2.3
1,289,141	-		MMP_RS06715	0.22	-1.2
1,289,219	-		MMP_RS06715	0.26	-2.2
1,289,220	+		MMP_RS06715	0.26	-2.0
1,289,298	+		MMP_RS06715	0.30	-1.9
1,289,335	+		MMP_RS06715	0.32	-1.4
1,289,476	-		MMP_RS06715	0.40	-2.3
1,289,498	+		MMP_RS06715	0.41	-1.7
1,289,595	+		MMP_RS06715	0.46	-1.4
1,289,613	+		MMP_RS06715	0.47	-1.5
1,289,615	-		MMP_RS06715	0.47	-2.1
1,289,615	-		MMP_RS06715	0.47	-2.0
1,289,629	-		MMP_RS06715	0.48	-2.4
1,289,635	+		MMP_RS06715	0.48	-2.4
1,289,642	-		MMP_RS06715	0.48	-2.2
1,289,642	-		MMP_RS06715	0.48	-2.4
1,289,646	+		MMP_RS06715	0.48	-0.8
1,289,646	+		MMP_RS06715	0.48	-2.3
1,289,772	-		MMP_RS06715	0.55	-2.5
1,289,826	-		MMP_RS06715	0.58	-1.1
1,289,860	+		MMP_RS06715	0.60	-1.9
1,289,977	-		MMP_RS06715	0.66	-2.2
1,290,051	-		MMP_RS06715	0.70	-2.4
1,290,105	-		MMP_RS06715	0.72	-1.5
1,290,105	-		MMP_RS06715	0.72	-2.3
1,290,134	+		MMP_RS06715	0.74	-1.9
1,290,140	+		MMP_RS06715	0.74	-4.4
1,290,194	-		MMP_RS06715	0.77	-1.8
1,290,202	-		MMP_RS06715	0.77	-2.3
1,290,260	-		MMP_RS06715	0.80	-1.7
1,290,260	-		MMP_RS06715	0.80	-2.7
1,290,413	+		MMP_RS06715	0.88	-2.2
1,290,416	+		MMP_RS06715	0.89	-2.8
1,290,422	+		MMP_RS06715	0.89	-1.7
1,290,422	+		MMP_RS06715	0.89	-2.1
1,290,626	+				-0.5
1,290,679	-				-2.1
1,290,749	+		MMP_RS06720	0.24	-2.2
1,290,945	-		MMP_RS06720	0.79	-2.3
1,290,949	-		MMP_RS06720	0.80	-2.6
1,290,980	-		MMP_RS06720	0.88	-2.9
1,290,981	+		MMP_RS06720	0.89	-1.3
1,290,981	+		MMP_RS06720	0.89	-3.1
1,290,983	-		MMP_RS06720	0.89	-2.2
1,290,985	-		MMP_RS06720	0.90	-0.8
1,290,985	-		MMP_RS06720	0.90	-2.0
1,290,986	+				-2.2
1,290,986	+				-2.7
1,291,044	-				-0.8
1,291,045	+				+0.1
1,291,052	-				-0.1
1,291,052	-				-0.0
1,291,125	+				+0.1
1,291,125	+				-0.3
1,291,126	-				+0.3
1,291,176	+				-0.6
1,291,176	+				+0.2
1,291,177	-				-0.4
1,291,178	+				-0.5
1,291,178	+				+0.3
1,291,212	+				-0.0
1,291,220	-				-0.6
1,291,264	+				+0.1
1,291,428	-		MMP_RS06725	0.14	-0.6
1,291,440	+		MMP_RS06725	0.14	-0.6
1,291,476	-		MMP_RS06725	0.17	+1.3