Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06340

Experiment: Formate McCas no stress control 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 2
1,219,097	-				-2.4
1,219,123	-				-1.6
1,219,291	-				-1.5
1,219,411	-				-1.3
1,219,448	-				-0.4
1,219,460	+				+0.0
1,219,546	+				+0.3
1,219,589	-		MMP_RS06335	0.16	-0.0
1,219,606	-		MMP_RS06335	0.21	+0.0
1,219,718	-		MMP_RS06335	0.50	+0.5
1,219,719	+		MMP_RS06335	0.50	-0.1
1,219,987	-				-0.6
1,220,075	+		MMP_RS06340	0.16	-2.8
1,220,173	-		MMP_RS06340	0.27	-1.5
1,220,211	-		MMP_RS06340	0.32	-0.8
1,220,326	+		MMP_RS06340	0.44	-1.3
1,220,352	+		MMP_RS06340	0.47	-1.8
1,220,359	-		MMP_RS06340	0.48	-2.0
1,220,404	-		MMP_RS06340	0.53	-2.1
1,220,455	+		MMP_RS06340	0.59	-1.2
1,220,460	-		MMP_RS06340	0.59	-2.3
1,220,523	-		MMP_RS06340	0.67	-1.1
1,220,524	+		MMP_RS06340	0.67	-1.8
1,220,548	+		MMP_RS06340	0.69	-1.6
1,220,714	+		MMP_RS06340	0.88	-1.4
1,220,761	-				-1.1
1,220,822	-				-0.9
1,220,847	+				-0.8
1,220,857	+				-0.0
1,220,888	-				+0.2
1,220,898	+				-2.5
1,220,907	-				-1.8
1,220,914	-				-1.1
1,221,002	+		MMP_RS06345	0.18	-2.1
1,221,004	-		MMP_RS06345	0.19	-1.7
1,221,268	-		MMP_RS06345	0.56	-1.8
1,221,333	-		MMP_RS06345	0.66	-3.2
1,221,333	-		MMP_RS06345	0.66	-3.3
1,221,333	-		MMP_RS06345	0.66	-2.7
1,221,333	-		MMP_RS06345	0.66	-1.8
1,221,333	-		MMP_RS06345	0.66	-1.8
1,221,333	-		MMP_RS06345	0.66	-2.8
1,221,334	+		MMP_RS06345	0.66	-2.8
1,221,334	+		MMP_RS06345	0.66	-2.3
1,221,334	+		MMP_RS06345	0.66	-2.4
1,221,336	+		MMP_RS06345	0.66	-1.9
1,221,351	+		MMP_RS06345	0.68	-2.4
1,221,356	+		MMP_RS06345	0.69	-2.1
1,221,384	-		MMP_RS06345	0.73	-2.8
1,221,384	-		MMP_RS06345	0.73	-2.1
1,221,543	-				-2.6
1,221,599	+				-0.1
1,221,610	-				+0.0
1,221,610	-				-0.3
1,221,611	+				-0.2
1,221,628	+				+0.1
1,221,630	+				+0.0
1,221,641	-				-0.0
1,221,641	-				-0.3
1,221,642	+				-0.1
1,221,642	+				+0.1
1,221,654	+				-0.6
1,221,654	+				-2.7
1,221,654	+				-1.8
1,221,781	+		MMP_RS06350	0.18	-1.6