Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06175

Experiment: Formate McCas no stress control 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 2
1,184,546	-		MMP_RS06165	0.88	+0.1
1,184,551	+		MMP_RS06165	0.89	+0.4
1,184,590	-				+1.3
1,184,590	-				-0.3
1,184,591	+				+0.0
1,184,593	+				+1.0
1,184,605	-				+0.1
1,184,632	-				-0.6
1,184,632	-				-0.6
1,184,783	-		MMP_RS06170	0.14	-0.3
1,185,068	+		MMP_RS06170	0.51	+0.2
1,185,195	+		MMP_RS06170	0.68	-0.4
1,185,275	+		MMP_RS06170	0.78	-0.2
1,185,330	-		MMP_RS06170	0.85	+0.6
1,185,338	-		MMP_RS06170	0.86	+0.1
1,185,339	+		MMP_RS06170	0.87	+0.2
1,185,339	+		MMP_RS06170	0.87	+0.0
1,185,339	+		MMP_RS06170	0.87	+0.1
1,185,339	+		MMP_RS06170	0.87	-0.1
1,185,339	+		MMP_RS06170	0.87	+0.3
1,185,433	-				-0.3
1,185,454	+				+0.7
1,185,460	+				+0.5
1,185,469	-				+0.3
1,185,470	+				-0.5
1,185,470	+				-0.4
1,185,476	+				-0.9
1,185,501	+				-0.1
1,185,585	-				-0.1
1,185,746	+		MMP_RS06175	0.24	-0.5
1,185,822	+		MMP_RS06175	0.33	-1.4
1,185,857	-		MMP_RS06175	0.37	-0.3
1,185,858	+		MMP_RS06175	0.37	-0.4
1,185,876	-		MMP_RS06175	0.39	-0.4
1,185,889	-		MMP_RS06175	0.40	-0.3
1,185,918	+		MMP_RS06175	0.44	-0.7
1,186,206	-		MMP_RS06175	0.77	-0.4
1,186,305	-		MMP_RS06175	0.89	-0.6
1,186,379	+				-0.2
1,186,401	+				-0.5
1,186,443	+				-0.3
1,186,446	+				+0.1
1,186,449	-				+0.3
1,186,461	-				+0.0
1,186,462	+				-0.0
1,186,462	+				-0.2
1,186,462	+				-0.8
1,186,462	+				+0.5
1,186,463	-				-0.1
1,186,464	+				+0.3
1,186,465	-				+0.1
1,186,465	-				+0.2
1,186,466	+				+0.2
1,186,466	+				+0.5
1,186,483	-				-0.3
1,186,483	-				-0.1
1,186,487	-				+0.0
1,186,498	+				-0.3
1,186,614	-				-2.1
1,187,302	-				-2.6
1,187,361	+				-1.6