Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05540

Experiment: Formate McCas no stress control 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 2
1,062,113	+		MMP_RS05530	0.73	+0.2
1,062,138	-		MMP_RS05530	0.75	+0.4
1,062,182	+		MMP_RS05530	0.80	+0.1
1,062,250	+		MMP_RS05530	0.87	+0.6
1,062,252	-		MMP_RS05530	0.88	+0.0
1,062,325	-				+0.9
1,062,350	-				+0.4
1,062,353	-				-0.4
1,062,353	-				+0.2
1,062,353	-				+0.3
1,062,355	-				-0.9
1,062,355	-				+0.0
1,062,355	-				+2.0
1,062,356	+				-0.7
1,062,369	-				-0.1
1,062,370	+				+0.5
1,062,370	+				+0.6
1,062,370	+				+0.3
1,062,452	-				-0.2
1,062,452	-				-0.8
1,062,516	-		MMP_RS05535	0.19	+0.1
1,062,517	+		MMP_RS05535	0.19	+0.5
1,062,517	+		MMP_RS05535	0.19	+0.5
1,062,520	-		MMP_RS05535	0.20	+0.3
1,062,520	-		MMP_RS05535	0.20	+0.4
1,062,520	-		MMP_RS05535	0.20	+0.9
1,062,520	-		MMP_RS05535	0.20	+1.3
1,062,521	+		MMP_RS05535	0.20	+1.9
1,062,912	+		MMP_RS05535	0.83	-0.0
1,062,912	+		MMP_RS05535	0.83	+0.8
1,062,999	-				+0.9
1,063,000	+				+0.8
1,063,005	+				+0.3
1,063,008	-				+0.4
1,063,008	-				+1.2
1,063,008	-				+1.0
1,063,033	-				+0.6
1,063,033	-				-0.1
1,063,034	+				+0.0
1,063,041	-				+0.8
1,063,041	-				+0.7
1,063,041	-				+0.4
1,063,041	-				+0.8
1,063,042	+				+1.1
1,063,042	+				+1.0
1,063,042	+				+1.2
1,063,042	+				+1.5
1,063,061	+				+1.3
1,063,071	+				+0.7
1,063,097	+				-0.3
1,063,154	+		MMP_RS05540	0.10	-0.3
1,063,189	+		MMP_RS05540	0.19	+0.1
1,063,298	+		MMP_RS05540	0.45	-0.3
1,063,398	-		MMP_RS05540	0.68	-1.4
1,063,418	-		MMP_RS05540	0.73	-1.6
1,063,419	+		MMP_RS05540	0.73	-1.8
1,063,419	+		MMP_RS05540	0.73	-2.4
1,063,419	+		MMP_RS05540	0.73	-2.0
1,063,532	-				-0.1
1,063,573	+				-0.3
1,063,584	-				-0.5
1,063,735	-		MMP_RS05545	0.17	+0.1
1,063,736	+		MMP_RS05545	0.17	+0.9
1,063,763	-		MMP_RS05545	0.19	-0.5
1,063,763	-		MMP_RS05545	0.19	-0.9
1,063,769	-		MMP_RS05545	0.20	-0.5
1,063,851	+		MMP_RS05545	0.27	-1.3
1,063,943	-		MMP_RS05545	0.35	-1.0
1,064,087	+		MMP_RS05545	0.48	-0.5