Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04890

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04880 and MMP_RS04885 are separated by 57 nucleotidesMMP_RS04885 and MMP_RS04890 are separated by 13 nucleotidesMMP_RS04890 and MMP_RS04895 are separated by 22 nucleotides MMP_RS04880: MMP_RS04880 - phosphoadenosine phosphosulfate reductase family protein, at 927,431 to 928,942 _RS04880 MMP_RS04885: MMP_RS04885 - sulfite exporter TauE/SafE family protein, at 929,000 to 929,812 _RS04885 MMP_RS04890: MMP_RS04890 - adenylyltransferase/cytidyltransferase family protein, at 929,826 to 930,278 _RS04890 MMP_RS04895: MMP_RS04895 - AI-2E family transporter, at 930,301 to 931,311 _RS04895 Position (kb) 929 930 931Strain fitness (log2 ratio) -1 0 1 2at 928.945 kb on - strandat 928.998 kb on + strandat 929.002 kb on + strandat 929.006 kb on - strandat 929.006 kb on - strandat 929.007 kb on + strandat 929.007 kb on + strandat 929.014 kb on - strandat 929.014 kb on - strandat 929.014 kb on - strandat 929.015 kb on + strandat 929.070 kb on + strandat 929.152 kb on + strand, within MMP_RS04885at 929.169 kb on - strand, within MMP_RS04885at 929.174 kb on + strand, within MMP_RS04885at 929.176 kb on + strand, within MMP_RS04885at 929.209 kb on + strand, within MMP_RS04885at 929.261 kb on - strand, within MMP_RS04885at 929.262 kb on + strand, within MMP_RS04885at 929.315 kb on + strand, within MMP_RS04885at 929.373 kb on + strand, within MMP_RS04885at 929.373 kb on + strand, within MMP_RS04885at 929.414 kb on + strand, within MMP_RS04885at 929.447 kb on - strand, within MMP_RS04885at 929.495 kb on - strand, within MMP_RS04885at 929.500 kb on + strand, within MMP_RS04885at 929.537 kb on + strand, within MMP_RS04885at 929.565 kb on - strand, within MMP_RS04885at 929.565 kb on - strand, within MMP_RS04885at 929.576 kb on - strand, within MMP_RS04885at 929.576 kb on - strand, within MMP_RS04885at 929.602 kb on + strand, within MMP_RS04885at 929.602 kb on + strand, within MMP_RS04885at 929.667 kb on - strand, within MMP_RS04885at 929.668 kb on + strand, within MMP_RS04885at 929.701 kb on + strand, within MMP_RS04885at 929.702 kb on - strand, within MMP_RS04885at 929.790 kb on + strandat 929.794 kb on + strandat 929.813 kb on + strandat 929.817 kb on + strandat 929.817 kb on + strandat 929.817 kb on + strandat 929.844 kb on + strandat 929.859 kb on + strandat 929.909 kb on + strand, within MMP_RS04890at 929.938 kb on + strand, within MMP_RS04890at 930.234 kb on - strandat 930.291 kb on - strandat 930.298 kb on - strandat 930.313 kb on - strandat 930.313 kb on - strandat 930.315 kb on - strandat 930.316 kb on + strandat 930.316 kb on + strandat 930.316 kb on + strandat 930.321 kb on - strandat 930.321 kb on - strandat 930.466 kb on - strand, within MMP_RS04895at 930.532 kb on - strand, within MMP_RS04895at 930.566 kb on - strand, within MMP_RS04895at 930.566 kb on - strand, within MMP_RS04895at 930.567 kb on + strand, within MMP_RS04895at 930.567 kb on + strand, within MMP_RS04895at 930.585 kb on - strand, within MMP_RS04895at 930.585 kb on - strand, within MMP_RS04895at 930.585 kb on - strand, within MMP_RS04895at 930.586 kb on + strand, within MMP_RS04895at 930.587 kb on - strand, within MMP_RS04895at 930.587 kb on - strand, within MMP_RS04895at 930.587 kb on - strand, within MMP_RS04895at 930.587 kb on - strand, within MMP_RS04895at 930.587 kb on - strand, within MMP_RS04895at 930.588 kb on + strand, within MMP_RS04895at 930.588 kb on + strand, within MMP_RS04895at 930.588 kb on + strand, within MMP_RS04895at 930.588 kb on + strand, within MMP_RS04895at 930.588 kb on + strand, within MMP_RS04895at 930.588 kb on + strand, within MMP_RS04895at 930.590 kb on + strand, within MMP_RS04895at 930.590 kb on + strand, within MMP_RS04895at 930.590 kb on + strand, within MMP_RS04895at 930.617 kb on + strand, within MMP_RS04895at 930.648 kb on - strand, within MMP_RS04895at 930.694 kb on - strand, within MMP_RS04895at 930.705 kb on - strand, within MMP_RS04895at 930.724 kb on - strand, within MMP_RS04895at 930.725 kb on + strand, within MMP_RS04895at 930.725 kb on + strand, within MMP_RS04895at 930.743 kb on - strand, within MMP_RS04895at 930.744 kb on + strand, within MMP_RS04895at 930.744 kb on + strand, within MMP_RS04895at 930.766 kb on + strand, within MMP_RS04895at 930.788 kb on - strand, within MMP_RS04895at 930.848 kb on - strand, within MMP_RS04895at 930.848 kb on - strand, within MMP_RS04895at 930.851 kb on - strand, within MMP_RS04895at 930.851 kb on - strand, within MMP_RS04895at 930.852 kb on + strand, within MMP_RS04895at 930.852 kb on + strand, within MMP_RS04895at 930.882 kb on - strand, within MMP_RS04895at 930.921 kb on - strand, within MMP_RS04895at 930.970 kb on - strand, within MMP_RS04895at 931.000 kb on - strand, within MMP_RS04895at 931.001 kb on + strand, within MMP_RS04895at 931.001 kb on + strand, within MMP_RS04895at 931.001 kb on + strand, within MMP_RS04895at 931.001 kb on + strand, within MMP_RS04895at 931.001 kb on + strand, within MMP_RS04895at 931.002 kb on - strand, within MMP_RS04895at 931.004 kb on - strand, within MMP_RS04895at 931.005 kb on + strand, within MMP_RS04895at 931.005 kb on + strand, within MMP_RS04895at 931.019 kb on + strand, within MMP_RS04895at 931.057 kb on - strand, within MMP_RS04895at 931.084 kb on - strand, within MMP_RS04895at 931.099 kb on - strand, within MMP_RS04895at 931.125 kb on - strand, within MMP_RS04895at 931.133 kb on + strand, within MMP_RS04895at 931.191 kb on - strand, within MMP_RS04895at 931.191 kb on - strand, within MMP_RS04895at 931.191 kb on - strand, within MMP_RS04895at 931.191 kb on - strand, within MMP_RS04895at 931.191 kb on - strand, within MMP_RS04895at 931.192 kb on + strand, within MMP_RS04895at 931.192 kb on + strand, within MMP_RS04895at 931.192 kb on + strand, within MMP_RS04895at 931.193 kb on - strand, within MMP_RS04895at 931.193 kb on - strand, within MMP_RS04895at 931.193 kb on - strand, within MMP_RS04895at 931.194 kb on + strand, within MMP_RS04895at 931.194 kb on + strand, within MMP_RS04895at 931.194 kb on + strand, within MMP_RS04895at 931.194 kb on + strand, within MMP_RS04895at 931.218 kb on - strandat 931.218 kb on - strandat 931.219 kb on + strandat 931.219 kb on + strandat 931.219 kb on + strandat 931.219 kb on + strandat 931.221 kb on - strandat 931.221 kb on - strandat 931.222 kb on + strandat 931.242 kb on - strandat 931.249 kb on + strandat 931.249 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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928,945 - -0.3
928,998 + +0.3
929,002 + +0.3
929,006 - -0.2
929,006 - +0.4
929,007 + +0.1
929,007 + -1.5
929,014 - +1.5
929,014 - -0.1
929,014 - -0.1
929,015 + +0.1
929,070 + +0.6
929,152 + MMP_RS04885 0.19 -0.1
929,169 - MMP_RS04885 0.21 +0.4
929,174 + MMP_RS04885 0.21 +0.3
929,176 + MMP_RS04885 0.22 -0.4
929,209 + MMP_RS04885 0.26 +0.4
929,261 - MMP_RS04885 0.32 +0.0
929,262 + MMP_RS04885 0.32 +0.2
929,315 + MMP_RS04885 0.39 -0.3
929,373 + MMP_RS04885 0.46 +0.0
929,373 + MMP_RS04885 0.46 -0.2
929,414 + MMP_RS04885 0.51 +0.0
929,447 - MMP_RS04885 0.55 -0.0
929,495 - MMP_RS04885 0.61 -0.4
929,500 + MMP_RS04885 0.62 +0.3
929,537 + MMP_RS04885 0.66 +0.1
929,565 - MMP_RS04885 0.69 -0.1
929,565 - MMP_RS04885 0.69 +0.3
929,576 - MMP_RS04885 0.71 +0.1
929,576 - MMP_RS04885 0.71 +0.0
929,602 + MMP_RS04885 0.74 +0.5
929,602 + MMP_RS04885 0.74 -0.3
929,667 - MMP_RS04885 0.82 +0.1
929,668 + MMP_RS04885 0.82 +0.0
929,701 + MMP_RS04885 0.86 +0.0
929,702 - MMP_RS04885 0.86 +0.3
929,790 + +0.1
929,794 + +0.0
929,813 + +0.1
929,817 + +0.0
929,817 + +0.5
929,817 + -0.2
929,844 + +0.4
929,859 + +0.2
929,909 + MMP_RS04890 0.18 -0.6
929,938 + MMP_RS04890 0.25 -1.5
930,234 - -1.2
930,291 - +0.2
930,298 - +0.7
930,313 - -0.4
930,313 - -0.3
930,315 - -0.1
930,316 + +1.1
930,316 + -0.2
930,316 + -1.5
930,321 - +0.2
930,321 - -0.2
930,466 - MMP_RS04895 0.16 -0.5
930,532 - MMP_RS04895 0.23 +0.1
930,566 - MMP_RS04895 0.26 -0.1
930,566 - MMP_RS04895 0.26 +0.5
930,567 + MMP_RS04895 0.26 -0.3
930,567 + MMP_RS04895 0.26 +0.5
930,585 - MMP_RS04895 0.28 -1.1
930,585 - MMP_RS04895 0.28 -0.1
930,585 - MMP_RS04895 0.28 -0.3
930,586 + MMP_RS04895 0.28 +0.2
930,587 - MMP_RS04895 0.28 -0.4
930,587 - MMP_RS04895 0.28 +0.0
930,587 - MMP_RS04895 0.28 +0.1
930,587 - MMP_RS04895 0.28 -1.2
930,587 - MMP_RS04895 0.28 -0.0
930,588 + MMP_RS04895 0.28 -0.1
930,588 + MMP_RS04895 0.28 +2.0
930,588 + MMP_RS04895 0.28 -0.2
930,588 + MMP_RS04895 0.28 +0.4
930,588 + MMP_RS04895 0.28 +0.2
930,588 + MMP_RS04895 0.28 -0.1
930,590 + MMP_RS04895 0.29 -0.2
930,590 + MMP_RS04895 0.29 -0.2
930,590 + MMP_RS04895 0.29 +0.1
930,617 + MMP_RS04895 0.31 +0.5
930,648 - MMP_RS04895 0.34 -0.2
930,694 - MMP_RS04895 0.39 -0.1
930,705 - MMP_RS04895 0.40 +0.8
930,724 - MMP_RS04895 0.42 +0.4
930,725 + MMP_RS04895 0.42 -0.8
930,725 + MMP_RS04895 0.42 -0.4
930,743 - MMP_RS04895 0.44 -0.4
930,744 + MMP_RS04895 0.44 -0.7
930,744 + MMP_RS04895 0.44 -0.3
930,766 + MMP_RS04895 0.46 -0.4
930,788 - MMP_RS04895 0.48 -0.1
930,848 - MMP_RS04895 0.54 -0.2
930,848 - MMP_RS04895 0.54 -0.1
930,851 - MMP_RS04895 0.54 -0.1
930,851 - MMP_RS04895 0.54 +0.1
930,852 + MMP_RS04895 0.55 -0.6
930,852 + MMP_RS04895 0.55 -0.1
930,882 - MMP_RS04895 0.57 +0.6
930,921 - MMP_RS04895 0.61 +0.3
930,970 - MMP_RS04895 0.66 +0.8
931,000 - MMP_RS04895 0.69 +0.0
931,001 + MMP_RS04895 0.69 -0.4
931,001 + MMP_RS04895 0.69 -0.5
931,001 + MMP_RS04895 0.69 +0.4
931,001 + MMP_RS04895 0.69 -0.1
931,001 + MMP_RS04895 0.69 -0.4
931,002 - MMP_RS04895 0.69 -0.8
931,004 - MMP_RS04895 0.70 +0.5
931,005 + MMP_RS04895 0.70 -0.1
931,005 + MMP_RS04895 0.70 +0.9
931,019 + MMP_RS04895 0.71 -0.5
931,057 - MMP_RS04895 0.75 -0.0
931,084 - MMP_RS04895 0.77 -0.2
931,099 - MMP_RS04895 0.79 +0.1
931,125 - MMP_RS04895 0.82 -0.2
931,133 + MMP_RS04895 0.82 +0.5
931,191 - MMP_RS04895 0.88 -0.2
931,191 - MMP_RS04895 0.88 -1.7
931,191 - MMP_RS04895 0.88 +0.2
931,191 - MMP_RS04895 0.88 -0.4
931,191 - MMP_RS04895 0.88 -0.5
931,192 + MMP_RS04895 0.88 -0.9
931,192 + MMP_RS04895 0.88 -0.2
931,192 + MMP_RS04895 0.88 +0.0
931,193 - MMP_RS04895 0.88 -0.2
931,193 - MMP_RS04895 0.88 -0.5
931,193 - MMP_RS04895 0.88 -0.2
931,194 + MMP_RS04895 0.88 +0.3
931,194 + MMP_RS04895 0.88 -0.8
931,194 + MMP_RS04895 0.88 -0.0
931,194 + MMP_RS04895 0.88 +0.1
931,218 - -0.6
931,218 - -0.9
931,219 + -0.3
931,219 + +0.5
931,219 + +0.4
931,219 + +0.3
931,221 - +0.5
931,221 - +0.5
931,222 + -0.1
931,242 - +0.5
931,249 + -0.2
931,249 + +0.0

Or see this region's nucleotide sequence