Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04575 and MMP_RS04580 are separated by 124 nucleotides MMP_RS04580 and MMP_RS04585 are separated by 174 nucleotides MMP_RS04585 and MMP_RS04590 are separated by 27 nucleotides
MMP_RS04575: MMP_RS04575 - homoisocitrate dehydrogenase, at 873,802 to 874,821
_RS04575
MMP_RS04580: MMP_RS04580 - hypothetical protein, at 874,946 to 875,287
_RS04580
MMP_RS04585: MMP_RS04585 - AIR synthase related protein, at 875,462 to 876,343
_RS04585
MMP_RS04590: MMP_RS04590 - hypothetical protein, at 876,371 to 877,336
_RS04590
Position (kb) 875
876
877 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 874.506 kb on - strand at 874.507 kb on + strand at 874.509 kb on + strand at 874.509 kb on + strand at 874.509 kb on + strand at 874.569 kb on - strand at 874.742 kb on + strand at 874.846 kb on - strand at 874.846 kb on - strand at 874.847 kb on + strand at 874.847 kb on + strand at 874.872 kb on - strand at 874.872 kb on - strand at 874.873 kb on + strand at 874.877 kb on - strand at 874.877 kb on - strand at 874.877 kb on - strand at 874.877 kb on - strand at 874.877 kb on - strand at 874.878 kb on + strand at 874.878 kb on + strand at 874.890 kb on - strand at 874.899 kb on + strand at 874.908 kb on - strand at 874.909 kb on + strand at 874.909 kb on + strand at 874.909 kb on + strand at 874.909 kb on + strand at 874.910 kb on - strand at 874.910 kb on - strand at 874.910 kb on - strand at 874.910 kb on - strand at 874.910 kb on - strand at 874.910 kb on - strand at 874.910 kb on - strand at 874.910 kb on - strand at 874.910 kb on - strand at 874.911 kb on + strand at 874.911 kb on + strand at 874.911 kb on + strand at 874.911 kb on + strand at 874.911 kb on + strand at 874.923 kb on - strand at 874.924 kb on + strand at 874.931 kb on - strand at 874.947 kb on - strand at 874.957 kb on + strand at 874.964 kb on - strand at 874.964 kb on - strand at 875.029 kb on - strand, within MMP_RS04580 at 875.029 kb on - strand, within MMP_RS04580 at 875.029 kb on - strand, within MMP_RS04580 at 875.049 kb on - strand, within MMP_RS04580 at 875.065 kb on - strand, within MMP_RS04580 at 875.082 kb on + strand, within MMP_RS04580 at 875.129 kb on + strand, within MMP_RS04580 at 875.129 kb on + strand, within MMP_RS04580 at 875.175 kb on - strand, within MMP_RS04580 at 875.175 kb on - strand, within MMP_RS04580 at 875.175 kb on - strand, within MMP_RS04580 at 875.175 kb on - strand, within MMP_RS04580 at 875.176 kb on + strand, within MMP_RS04580 at 875.176 kb on + strand, within MMP_RS04580 at 875.176 kb on + strand, within MMP_RS04580 at 875.176 kb on + strand, within MMP_RS04580 at 875.176 kb on + strand, within MMP_RS04580 at 875.176 kb on + strand, within MMP_RS04580 at 875.179 kb on - strand, within MMP_RS04580 at 875.180 kb on + strand, within MMP_RS04580 at 875.180 kb on + strand, within MMP_RS04580 at 875.252 kb on - strand, within MMP_RS04580 at 875.289 kb on + strand at 875.304 kb on - strand at 875.305 kb on + strand at 875.322 kb on + strand at 875.339 kb on - strand at 875.340 kb on + strand at 875.348 kb on - strand at 875.352 kb on - strand at 875.353 kb on + strand at 875.353 kb on + strand at 875.354 kb on - strand at 875.355 kb on + strand at 875.382 kb on - strand at 875.383 kb on + strand at 875.388 kb on - strand at 875.388 kb on - strand at 875.389 kb on + strand at 875.391 kb on + strand at 875.391 kb on + strand at 875.394 kb on - strand at 875.395 kb on + strand at 875.411 kb on + strand at 875.425 kb on - strand at 875.426 kb on + strand at 875.426 kb on + strand at 875.428 kb on + strand at 875.444 kb on + strand at 875.489 kb on - strand at 875.490 kb on + strand at 875.503 kb on - strand at 875.503 kb on - strand at 875.516 kb on + strand at 875.598 kb on - strand, within MMP_RS04585 at 875.621 kb on + strand, within MMP_RS04585 at 875.668 kb on - strand, within MMP_RS04585 at 875.678 kb on + strand, within MMP_RS04585 at 875.678 kb on + strand, within MMP_RS04585 at 875.766 kb on - strand, within MMP_RS04585 at 875.767 kb on + strand, within MMP_RS04585 at 875.767 kb on + strand, within MMP_RS04585 at 875.797 kb on - strand, within MMP_RS04585 at 875.797 kb on - strand, within MMP_RS04585 at 875.798 kb on + strand, within MMP_RS04585 at 875.809 kb on + strand, within MMP_RS04585 at 875.811 kb on - strand, within MMP_RS04585 at 875.892 kb on - strand, within MMP_RS04585 at 875.893 kb on + strand, within MMP_RS04585 at 875.925 kb on - strand, within MMP_RS04585 at 875.926 kb on + strand, within MMP_RS04585 at 875.926 kb on + strand, within MMP_RS04585 at 875.926 kb on + strand, within MMP_RS04585 at 875.926 kb on + strand, within MMP_RS04585 at 875.949 kb on - strand, within MMP_RS04585 at 875.959 kb on - strand, within MMP_RS04585 at 876.007 kb on + strand, within MMP_RS04585 at 876.007 kb on + strand, within MMP_RS04585 at 876.166 kb on + strand, within MMP_RS04585 at 876.166 kb on + strand, within MMP_RS04585 at 876.196 kb on - strand, within MMP_RS04585 at 876.196 kb on - strand, within MMP_RS04585 at 876.220 kb on - strand, within MMP_RS04585 at 876.220 kb on - strand, within MMP_RS04585 at 876.220 kb on - strand, within MMP_RS04585 at 876.221 kb on + strand, within MMP_RS04585 at 876.221 kb on + strand, within MMP_RS04585 at 876.221 kb on + strand, within MMP_RS04585 at 876.221 kb on + strand, within MMP_RS04585 at 876.221 kb on + strand, within MMP_RS04585 at 876.250 kb on + strand, within MMP_RS04585 at 876.267 kb on - strand at 876.289 kb on - strand at 876.289 kb on - strand at 876.295 kb on - strand at 876.315 kb on - strand at 876.316 kb on + strand at 876.316 kb on + strand at 876.335 kb on + strand at 876.366 kb on + strand at 876.407 kb on + strand at 876.501 kb on - strand, within MMP_RS04590 at 876.501 kb on - strand, within MMP_RS04590 at 876.502 kb on + strand, within MMP_RS04590 at 876.506 kb on - strand, within MMP_RS04590 at 876.507 kb on + strand, within MMP_RS04590 at 876.507 kb on + strand, within MMP_RS04590 at 876.516 kb on - strand, within MMP_RS04590 at 876.527 kb on - strand, within MMP_RS04590 at 876.528 kb on + strand, within MMP_RS04590 at 876.542 kb on + strand, within MMP_RS04590 at 876.546 kb on + strand, within MMP_RS04590 at 876.560 kb on - strand, within MMP_RS04590 at 876.560 kb on - strand, within MMP_RS04590 at 876.607 kb on - strand, within MMP_RS04590 at 876.608 kb on + strand, within MMP_RS04590 at 876.632 kb on + strand, within MMP_RS04590 at 876.659 kb on - strand, within MMP_RS04590 at 876.687 kb on + strand, within MMP_RS04590 at 876.691 kb on - strand, within MMP_RS04590 at 876.955 kb on + strand, within MMP_RS04590 at 876.998 kb on - strand, within MMP_RS04590 at 877.043 kb on - strand, within MMP_RS04590 at 877.120 kb on + strand, within MMP_RS04590 at 877.133 kb on + strand, within MMP_RS04590 at 877.133 kb on + strand, within MMP_RS04590 at 877.133 kb on + strand, within MMP_RS04590 at 877.138 kb on - strand, within MMP_RS04590 at 877.170 kb on - strand, within MMP_RS04590 at 877.174 kb on - strand, within MMP_RS04590 at 877.209 kb on + strand, within MMP_RS04590 at 877.233 kb on + strand, within MMP_RS04590 at 877.272 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 874,506 - -1.2 874,507 + -0.0 874,509 + -1.8 874,509 + -0.6 874,509 + -2.1 874,569 - -1.9 874,742 + -1.8 874,846 - +0.5 874,846 - -0.6 874,847 + -1.2 874,847 + -2.0 874,872 - +0.2 874,872 - +0.7 874,873 + -1.8 874,877 - +0.3 874,877 - -0.1 874,877 - -0.9 874,877 - -0.9 874,877 - -2.1 874,878 + -1.0 874,878 + -2.2 874,890 - +0.1 874,899 + +0.0 874,908 - -0.3 874,909 + -0.7 874,909 + -0.4 874,909 + +0.0 874,909 + -0.1 874,910 - +0.5 874,910 - +0.8 874,910 - +0.4 874,910 - +0.4 874,910 - +0.1 874,910 - +0.2 874,910 - -0.2 874,910 - +0.3 874,910 - +0.2 874,911 + -0.2 874,911 + -0.3 874,911 + -0.0 874,911 + -0.1 874,911 + +0.1 874,923 - -0.0 874,924 + -0.1 874,931 - +0.7 874,947 - -0.1 874,957 + +0.3 874,964 - -0.0 874,964 - -0.3 875,029 - MMP_RS04580 0.24 +0.1 875,029 - MMP_RS04580 0.24 +0.1 875,029 - MMP_RS04580 0.24 +0.4 875,049 - MMP_RS04580 0.30 +0.4 875,065 - MMP_RS04580 0.35 -0.3 875,082 + MMP_RS04580 0.40 -0.4 875,129 + MMP_RS04580 0.54 -0.8 875,129 + MMP_RS04580 0.54 -0.1 875,175 - MMP_RS04580 0.67 +0.0 875,175 - MMP_RS04580 0.67 -0.1 875,175 - MMP_RS04580 0.67 +0.6 875,175 - MMP_RS04580 0.67 +0.5 875,176 + MMP_RS04580 0.67 -0.7 875,176 + MMP_RS04580 0.67 +0.0 875,176 + MMP_RS04580 0.67 +0.3 875,176 + MMP_RS04580 0.67 +0.0 875,176 + MMP_RS04580 0.67 +0.4 875,176 + MMP_RS04580 0.67 +0.0 875,179 - MMP_RS04580 0.68 +0.3 875,180 + MMP_RS04580 0.68 -0.0 875,180 + MMP_RS04580 0.68 -0.2 875,252 - MMP_RS04580 0.89 +0.4 875,289 + -0.1 875,304 - -0.1 875,305 + +0.3 875,322 + +0.3 875,339 - +0.2 875,340 + -0.2 875,348 - +0.1 875,352 - -0.0 875,353 + +0.2 875,353 + +0.1 875,354 - +0.4 875,355 + -0.5 875,382 - -0.1 875,383 + +2.0 875,388 - -0.4 875,388 - +0.7 875,389 + +0.1 875,391 + +1.1 875,391 + +0.0 875,394 - +0.7 875,395 + +0.5 875,411 + +0.2 875,425 - -0.1 875,426 + -0.1 875,426 + +0.2 875,428 + +0.1 875,444 + -0.2 875,489 - -1.9 875,490 + -0.5 875,503 - +0.3 875,503 - -2.2 875,516 + -2.0 875,598 - MMP_RS04585 0.15 +0.0 875,621 + MMP_RS04585 0.18 -1.9 875,668 - MMP_RS04585 0.23 -0.9 875,678 + MMP_RS04585 0.24 -2.5 875,678 + MMP_RS04585 0.24 -0.5 875,766 - MMP_RS04585 0.34 -0.7 875,767 + MMP_RS04585 0.35 -3.5 875,767 + MMP_RS04585 0.35 -1.7 875,797 - MMP_RS04585 0.38 -2.0 875,797 - MMP_RS04585 0.38 -2.9 875,798 + MMP_RS04585 0.38 -1.8 875,809 + MMP_RS04585 0.39 -0.7 875,811 - MMP_RS04585 0.40 -0.5 875,892 - MMP_RS04585 0.49 -2.1 875,893 + MMP_RS04585 0.49 -2.0 875,925 - MMP_RS04585 0.52 -0.7 875,926 + MMP_RS04585 0.53 -3.0 875,926 + MMP_RS04585 0.53 -1.7 875,926 + MMP_RS04585 0.53 +0.8 875,926 + MMP_RS04585 0.53 -0.3 875,949 - MMP_RS04585 0.55 -1.6 875,959 - MMP_RS04585 0.56 -1.4 876,007 + MMP_RS04585 0.62 +0.0 876,007 + MMP_RS04585 0.62 -1.2 876,166 + MMP_RS04585 0.80 -2.2 876,166 + MMP_RS04585 0.80 -2.4 876,196 - MMP_RS04585 0.83 -2.3 876,196 - MMP_RS04585 0.83 -0.5 876,220 - MMP_RS04585 0.86 -2.4 876,220 - MMP_RS04585 0.86 -1.9 876,220 - MMP_RS04585 0.86 -0.1 876,221 + MMP_RS04585 0.86 -1.4 876,221 + MMP_RS04585 0.86 -2.0 876,221 + MMP_RS04585 0.86 -2.3 876,221 + MMP_RS04585 0.86 -1.1 876,221 + MMP_RS04585 0.86 -1.9 876,250 + MMP_RS04585 0.89 -0.9 876,267 - -1.6 876,289 - -0.9 876,289 - -0.9 876,295 - -0.3 876,315 - -0.1 876,316 + -0.2 876,316 + +0.3 876,335 + -0.2 876,366 + -0.1 876,407 + +0.2 876,501 - MMP_RS04590 0.13 -0.1 876,501 - MMP_RS04590 0.13 -0.0 876,502 + MMP_RS04590 0.14 +0.2 876,506 - MMP_RS04590 0.14 +0.1 876,507 + MMP_RS04590 0.14 -0.2 876,507 + MMP_RS04590 0.14 +0.2 876,516 - MMP_RS04590 0.15 +0.6 876,527 - MMP_RS04590 0.16 +0.2 876,528 + MMP_RS04590 0.16 -0.3 876,542 + MMP_RS04590 0.18 -0.2 876,546 + MMP_RS04590 0.18 +0.2 876,560 - MMP_RS04590 0.20 +0.0 876,560 - MMP_RS04590 0.20 -0.6 876,607 - MMP_RS04590 0.24 -0.2 876,608 + MMP_RS04590 0.25 -0.6 876,632 + MMP_RS04590 0.27 -0.0 876,659 - MMP_RS04590 0.30 -0.3 876,687 + MMP_RS04590 0.33 +0.5 876,691 - MMP_RS04590 0.33 -0.5 876,955 + MMP_RS04590 0.60 +0.2 876,998 - MMP_RS04590 0.65 +0.2 877,043 - MMP_RS04590 0.70 -0.7 877,120 + MMP_RS04590 0.78 +0.1 877,133 + MMP_RS04590 0.79 +0.1 877,133 + MMP_RS04590 0.79 +0.0 877,133 + MMP_RS04590 0.79 -0.2 877,138 - MMP_RS04590 0.79 -0.5 877,170 - MMP_RS04590 0.83 -0.2 877,174 - MMP_RS04590 0.83 +0.0 877,209 + MMP_RS04590 0.87 -0.1 877,233 + MMP_RS04590 0.89 +0.0 877,272 + -0.5
Or see this region's nucleotide sequence