Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04100 and MMP_RS04105 are separated by 49 nucleotides MMP_RS04105 and MMP_RS04110 are separated by 243 nucleotides MMP_RS04110 and MMP_RS04115 are separated by 615 nucleotides
MMP_RS04100: MMP_RS04100 - hypothetical protein, at 777,809 to 777,994
_RS04100
MMP_RS04105: MMP_RS04105 - MarR family transcriptional regulator, at 778,044 to 778,538
_RS04105
MMP_RS04110: MMP_RS04110 - methyl-accepting chemotaxis protein, at 778,782 to 780,980
_RS04110
MMP_RS04115: MMP_RS04115 - cytosine permease, at 781,596 to 782,831
_RS04115
Position (kb) 778
779
780
781 Strain fitness (log2 ratio) -1
0
1
2 at 777.791 kb on - strand at 777.875 kb on - strand, within MMP_RS04100 at 777.876 kb on + strand, within MMP_RS04100 at 777.964 kb on + strand, within MMP_RS04100 at 777.986 kb on + strand at 778.032 kb on + strand at 778.070 kb on - strand at 778.104 kb on - strand, within MMP_RS04105 at 778.201 kb on - strand, within MMP_RS04105 at 778.207 kb on - strand, within MMP_RS04105 at 778.208 kb on + strand, within MMP_RS04105 at 778.232 kb on - strand, within MMP_RS04105 at 778.263 kb on - strand, within MMP_RS04105 at 778.331 kb on - strand, within MMP_RS04105 at 778.352 kb on - strand, within MMP_RS04105 at 778.353 kb on + strand, within MMP_RS04105 at 778.417 kb on - strand, within MMP_RS04105 at 778.418 kb on + strand, within MMP_RS04105 at 778.437 kb on + strand, within MMP_RS04105 at 778.495 kb on - strand at 778.499 kb on - strand at 778.499 kb on - strand at 778.499 kb on - strand at 778.500 kb on + strand at 778.500 kb on + strand at 778.500 kb on + strand at 778.538 kb on - strand at 778.542 kb on - strand at 778.542 kb on - strand at 778.543 kb on + strand at 778.556 kb on - strand at 778.595 kb on - strand at 778.595 kb on - strand at 778.632 kb on - strand at 778.635 kb on - strand at 778.636 kb on + strand at 778.641 kb on - strand at 778.641 kb on - strand at 778.644 kb on - strand at 778.669 kb on - strand at 778.690 kb on - strand at 778.855 kb on - strand at 778.935 kb on + strand at 779.018 kb on - strand, within MMP_RS04110 at 779.058 kb on + strand, within MMP_RS04110 at 779.198 kb on - strand, within MMP_RS04110 at 779.341 kb on - strand, within MMP_RS04110 at 779.374 kb on - strand, within MMP_RS04110 at 779.502 kb on - strand, within MMP_RS04110 at 779.502 kb on - strand, within MMP_RS04110 at 779.502 kb on - strand, within MMP_RS04110 at 779.506 kb on - strand, within MMP_RS04110 at 779.507 kb on + strand, within MMP_RS04110 at 779.507 kb on + strand, within MMP_RS04110 at 779.526 kb on - strand, within MMP_RS04110 at 779.526 kb on - strand, within MMP_RS04110 at 779.526 kb on - strand, within MMP_RS04110 at 779.527 kb on + strand, within MMP_RS04110 at 779.561 kb on - strand, within MMP_RS04110 at 779.561 kb on - strand, within MMP_RS04110 at 779.572 kb on + strand, within MMP_RS04110 at 779.582 kb on + strand, within MMP_RS04110 at 779.602 kb on - strand, within MMP_RS04110 at 779.603 kb on + strand, within MMP_RS04110 at 779.603 kb on + strand, within MMP_RS04110 at 779.615 kb on + strand, within MMP_RS04110 at 779.677 kb on - strand, within MMP_RS04110 at 779.690 kb on + strand, within MMP_RS04110 at 779.697 kb on + strand, within MMP_RS04110 at 779.717 kb on - strand, within MMP_RS04110 at 779.718 kb on + strand, within MMP_RS04110 at 779.761 kb on - strand, within MMP_RS04110 at 779.833 kb on - strand, within MMP_RS04110 at 780.009 kb on + strand, within MMP_RS04110 at 780.086 kb on + strand, within MMP_RS04110 at 780.089 kb on - strand, within MMP_RS04110 at 780.258 kb on - strand, within MMP_RS04110 at 780.259 kb on + strand, within MMP_RS04110 at 780.592 kb on - strand, within MMP_RS04110 at 780.592 kb on - strand, within MMP_RS04110 at 780.592 kb on - strand, within MMP_RS04110 at 780.593 kb on + strand, within MMP_RS04110 at 780.593 kb on + strand, within MMP_RS04110 at 780.618 kb on + strand, within MMP_RS04110 at 780.637 kb on - strand, within MMP_RS04110 at 780.698 kb on + strand, within MMP_RS04110 at 780.731 kb on + strand, within MMP_RS04110 at 780.865 kb on - strand at 780.887 kb on + strand at 781.001 kb on - strand at 781.002 kb on + strand at 781.017 kb on - strand at 781.019 kb on - strand at 781.020 kb on + strand at 781.031 kb on - strand at 781.031 kb on - strand at 781.031 kb on - strand at 781.032 kb on + strand at 781.034 kb on - strand at 781.034 kb on - strand at 781.048 kb on - strand at 781.049 kb on + strand at 781.049 kb on + strand at 781.050 kb on - strand at 781.050 kb on - strand at 781.050 kb on - strand at 781.051 kb on + strand at 781.051 kb on + strand at 781.056 kb on - strand at 781.057 kb on + strand at 781.057 kb on + strand at 781.058 kb on - strand at 781.058 kb on - strand at 781.058 kb on - strand at 781.059 kb on + strand at 781.059 kb on + strand at 781.061 kb on + strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.089 kb on + strand at 781.089 kb on + strand at 781.097 kb on - strand at 781.097 kb on - strand at 781.098 kb on + strand at 781.099 kb on - strand at 781.099 kb on - strand at 781.099 kb on - strand at 781.099 kb on - strand at 781.099 kb on - strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.111 kb on + strand at 781.111 kb on + strand at 781.131 kb on - strand at 781.132 kb on + strand at 781.134 kb on + strand at 781.134 kb on + strand at 781.134 kb on + strand at 781.155 kb on + strand at 781.168 kb on - strand at 781.168 kb on - strand at 781.173 kb on + strand at 781.190 kb on - strand at 781.190 kb on - strand at 781.196 kb on - strand at 781.196 kb on - strand at 781.196 kb on - strand at 781.197 kb on + strand at 781.239 kb on + strand at 781.267 kb on - strand at 781.267 kb on - strand at 781.315 kb on - strand at 781.332 kb on + strand at 781.336 kb on + strand at 781.337 kb on - strand at 781.432 kb on + strand at 781.482 kb on - strand at 781.505 kb on - strand at 781.515 kb on - strand at 781.523 kb on + strand at 781.578 kb on + strand at 781.586 kb on + strand at 781.589 kb on + strand at 781.590 kb on - strand at 781.597 kb on - strand at 781.626 kb on - strand at 781.633 kb on - strand at 781.634 kb on + strand at 781.638 kb on + strand at 781.638 kb on + strand at 781.662 kb on - strand at 781.749 kb on + strand, within MMP_RS04115 at 781.768 kb on - strand, within MMP_RS04115 at 781.802 kb on - strand, within MMP_RS04115 at 781.802 kb on - strand, within MMP_RS04115 at 781.835 kb on - strand, within MMP_RS04115 at 781.835 kb on - strand, within MMP_RS04115 at 781.854 kb on - strand, within MMP_RS04115 at 781.855 kb on + strand, within MMP_RS04115 at 781.862 kb on - strand, within MMP_RS04115 at 781.868 kb on + strand, within MMP_RS04115 at 781.938 kb on + strand, within MMP_RS04115
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 777,791 - +0.0 777,875 - MMP_RS04100 0.35 -0.1 777,876 + MMP_RS04100 0.36 -0.0 777,964 + MMP_RS04100 0.83 -0.4 777,986 + -0.6 778,032 + +0.0 778,070 - -0.1 778,104 - MMP_RS04105 0.12 +0.6 778,201 - MMP_RS04105 0.32 +0.2 778,207 - MMP_RS04105 0.33 +0.1 778,208 + MMP_RS04105 0.33 -0.4 778,232 - MMP_RS04105 0.38 +0.1 778,263 - MMP_RS04105 0.44 -0.6 778,331 - MMP_RS04105 0.58 -0.1 778,352 - MMP_RS04105 0.62 +0.2 778,353 + MMP_RS04105 0.62 -0.5 778,417 - MMP_RS04105 0.75 -0.1 778,418 + MMP_RS04105 0.76 -0.1 778,437 + MMP_RS04105 0.79 +2.1 778,495 - +0.1 778,499 - -0.2 778,499 - +0.3 778,499 - +0.1 778,500 + +0.3 778,500 + +0.3 778,500 + -0.4 778,538 - +0.8 778,542 - -0.1 778,542 - -0.7 778,543 + +0.5 778,556 - -0.2 778,595 - -0.1 778,595 - -0.1 778,632 - -0.1 778,635 - +0.5 778,636 + +0.0 778,641 - +0.0 778,641 - -0.6 778,644 - +0.6 778,669 - +0.0 778,690 - +0.0 778,855 - -0.0 778,935 + +0.2 779,018 - MMP_RS04110 0.11 +0.1 779,058 + MMP_RS04110 0.13 -0.2 779,198 - MMP_RS04110 0.19 -0.2 779,341 - MMP_RS04110 0.25 +0.0 779,374 - MMP_RS04110 0.27 +0.1 779,502 - MMP_RS04110 0.33 +0.2 779,502 - MMP_RS04110 0.33 -0.4 779,502 - MMP_RS04110 0.33 +0.9 779,506 - MMP_RS04110 0.33 -0.0 779,507 + MMP_RS04110 0.33 -0.1 779,507 + MMP_RS04110 0.33 +0.0 779,526 - MMP_RS04110 0.34 +0.1 779,526 - MMP_RS04110 0.34 +0.3 779,526 - MMP_RS04110 0.34 +0.7 779,527 + MMP_RS04110 0.34 +0.1 779,561 - MMP_RS04110 0.35 +0.0 779,561 - MMP_RS04110 0.35 +0.1 779,572 + MMP_RS04110 0.36 +0.5 779,582 + MMP_RS04110 0.36 +0.0 779,602 - MMP_RS04110 0.37 +0.3 779,603 + MMP_RS04110 0.37 +0.1 779,603 + MMP_RS04110 0.37 -0.1 779,615 + MMP_RS04110 0.38 +0.3 779,677 - MMP_RS04110 0.41 +0.7 779,690 + MMP_RS04110 0.41 +0.1 779,697 + MMP_RS04110 0.42 -0.3 779,717 - MMP_RS04110 0.43 -0.6 779,718 + MMP_RS04110 0.43 +0.1 779,761 - MMP_RS04110 0.45 -0.3 779,833 - MMP_RS04110 0.48 -0.1 780,009 + MMP_RS04110 0.56 +0.5 780,086 + MMP_RS04110 0.59 +0.2 780,089 - MMP_RS04110 0.59 +0.0 780,258 - MMP_RS04110 0.67 +0.1 780,259 + MMP_RS04110 0.67 -0.2 780,592 - MMP_RS04110 0.82 +0.2 780,592 - MMP_RS04110 0.82 +0.2 780,592 - MMP_RS04110 0.82 +0.5 780,593 + MMP_RS04110 0.82 -0.1 780,593 + MMP_RS04110 0.82 +0.4 780,618 + MMP_RS04110 0.83 +0.4 780,637 - MMP_RS04110 0.84 -0.4 780,698 + MMP_RS04110 0.87 -0.4 780,731 + MMP_RS04110 0.89 -0.6 780,865 - +0.6 780,887 + -0.2 781,001 - +0.4 781,002 + -0.0 781,017 - +0.3 781,019 - -0.1 781,020 + +0.2 781,031 - -0.3 781,031 - -0.6 781,031 - -0.1 781,032 + +0.4 781,034 - +0.8 781,034 - -0.4 781,048 - +0.8 781,049 + +0.1 781,049 + -0.0 781,050 - -0.0 781,050 - +0.1 781,050 - +0.3 781,051 + +0.1 781,051 + +0.3 781,056 - -0.2 781,057 + +0.0 781,057 + +0.3 781,058 - -0.4 781,058 - +0.0 781,058 - -0.1 781,059 + +0.3 781,059 + -0.1 781,061 + -0.2 781,088 - +0.5 781,088 - +0.1 781,088 - -0.1 781,088 - -0.2 781,088 - -0.3 781,088 - -0.2 781,089 + +0.2 781,089 + +0.6 781,097 - -0.3 781,097 - -0.1 781,098 + +0.2 781,099 - +0.3 781,099 - -0.0 781,099 - -0.1 781,099 - +0.0 781,099 - +0.2 781,100 + +0.9 781,100 + +0.0 781,100 + +0.1 781,100 + +0.3 781,100 + +0.4 781,100 + +0.1 781,111 + +0.2 781,111 + +0.7 781,131 - +0.1 781,132 + +0.5 781,134 + +0.2 781,134 + -0.3 781,134 + -0.4 781,155 + -0.0 781,168 - +0.4 781,168 - -0.2 781,173 + -0.4 781,190 - -0.1 781,190 - +0.1 781,196 - +0.1 781,196 - +0.9 781,196 - +0.1 781,197 + -0.7 781,239 + +0.2 781,267 - +0.2 781,267 - +0.2 781,315 - +0.0 781,332 + -0.4 781,336 + +0.9 781,337 - -0.2 781,432 + +0.2 781,482 - +0.2 781,505 - +0.2 781,515 - -0.1 781,523 + -0.0 781,578 + -0.5 781,586 + +0.6 781,589 + -0.2 781,590 - -0.5 781,597 - +0.0 781,626 - -0.2 781,633 - +0.7 781,634 + -0.2 781,638 + -0.1 781,638 + -0.1 781,662 - -0.0 781,749 + MMP_RS04115 0.12 +0.2 781,768 - MMP_RS04115 0.14 -0.6 781,802 - MMP_RS04115 0.17 -0.2 781,802 - MMP_RS04115 0.17 -0.3 781,835 - MMP_RS04115 0.19 -0.2 781,835 - MMP_RS04115 0.19 -0.0 781,854 - MMP_RS04115 0.21 -0.0 781,855 + MMP_RS04115 0.21 -0.0 781,862 - MMP_RS04115 0.22 +0.2 781,868 + MMP_RS04115 0.22 +0.4 781,938 + MMP_RS04115 0.28 +0.2
Or see this region's nucleotide sequence