Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03570 and MMP_RS03575 are separated by 164 nucleotides MMP_RS03575 and MMP_RS03580 are separated by 99 nucleotides MMP_RS03580 and MMP_RS03585 are separated by 163 nucleotides MMP_RS03585 and MMP_RS03590 are separated by 121 nucleotides
MMP_RS03570: MMP_RS03570 - uracil-xanthine permease family protein, at 669,125 to 670,366
_RS03570
MMP_RS03575: MMP_RS03575 - ECF transporter S component, at 670,531 to 671,097
_RS03575
MMP_RS03580: MMP_RS03580 - signal recognition particle-docking protein FtsY, at 671,197 to 672,348
_RS03580
MMP_RS03585: MMP_RS03585 - Hsp20/alpha crystallin family protein, at 672,512 to 672,976
_RS03585
MMP_RS03590: MMP_RS03590 - METTL5 family protein, at 673,098 to 673,739
_RS03590
Position (kb) 671
672
673 Strain fitness (log2 ratio) -2
-1
0
1 at 670.334 kb on - strand at 670.335 kb on + strand at 670.350 kb on + strand at 670.350 kb on + strand at 670.350 kb on + strand at 670.356 kb on + strand at 670.392 kb on + strand at 670.437 kb on + strand at 670.440 kb on - strand at 670.466 kb on - strand at 670.536 kb on - strand at 670.558 kb on - strand at 670.559 kb on + strand at 670.583 kb on + strand at 670.598 kb on - strand, within MMP_RS03575 at 670.616 kb on + strand, within MMP_RS03575 at 670.655 kb on - strand, within MMP_RS03575 at 670.656 kb on + strand, within MMP_RS03575 at 670.656 kb on + strand, within MMP_RS03575 at 670.656 kb on + strand, within MMP_RS03575 at 670.671 kb on - strand, within MMP_RS03575 at 670.683 kb on - strand, within MMP_RS03575 at 670.778 kb on + strand, within MMP_RS03575 at 670.805 kb on + strand, within MMP_RS03575 at 670.874 kb on + strand, within MMP_RS03575 at 670.908 kb on - strand, within MMP_RS03575 at 670.908 kb on - strand, within MMP_RS03575 at 670.908 kb on - strand, within MMP_RS03575 at 670.981 kb on - strand, within MMP_RS03575 at 671.057 kb on + strand at 671.088 kb on - strand at 671.089 kb on + strand at 671.143 kb on + strand at 671.143 kb on + strand at 671.144 kb on - strand at 671.144 kb on - strand at 671.152 kb on + strand at 671.185 kb on - strand at 671.312 kb on + strand at 671.410 kb on + strand, within MMP_RS03580 at 671.521 kb on - strand, within MMP_RS03580 at 671.606 kb on - strand, within MMP_RS03580 at 671.754 kb on - strand, within MMP_RS03580 at 671.960 kb on + strand, within MMP_RS03580 at 672.061 kb on + strand, within MMP_RS03580 at 672.382 kb on - strand at 672.392 kb on + strand at 672.412 kb on - strand at 672.416 kb on + strand at 672.422 kb on + strand at 672.425 kb on - strand at 672.425 kb on - strand at 672.434 kb on - strand at 672.507 kb on + strand at 672.507 kb on + strand at 672.666 kb on - strand, within MMP_RS03585 at 672.848 kb on - strand, within MMP_RS03585 at 673.000 kb on - strand at 673.028 kb on + strand at 673.050 kb on - strand at 673.052 kb on - strand at 673.096 kb on - strand at 673.274 kb on - strand, within MMP_RS03590 at 673.275 kb on + strand, within MMP_RS03590 at 673.275 kb on + strand, within MMP_RS03590 at 673.277 kb on + strand, within MMP_RS03590
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 670,334 - +0.1 670,335 + +0.1 670,350 + +0.4 670,350 + -0.0 670,350 + +0.1 670,356 + +1.2 670,392 + -0.5 670,437 + +0.0 670,440 - -0.1 670,466 - +0.2 670,536 - +0.2 670,558 - +0.7 670,559 + +0.5 670,583 + +0.6 670,598 - MMP_RS03575 0.12 +0.2 670,616 + MMP_RS03575 0.15 -0.5 670,655 - MMP_RS03575 0.22 -0.1 670,656 + MMP_RS03575 0.22 -0.1 670,656 + MMP_RS03575 0.22 -1.0 670,656 + MMP_RS03575 0.22 +0.1 670,671 - MMP_RS03575 0.25 -0.0 670,683 - MMP_RS03575 0.27 +0.2 670,778 + MMP_RS03575 0.44 -0.5 670,805 + MMP_RS03575 0.48 -0.1 670,874 + MMP_RS03575 0.60 -0.1 670,908 - MMP_RS03575 0.66 +0.5 670,908 - MMP_RS03575 0.66 +0.0 670,908 - MMP_RS03575 0.66 -0.2 670,981 - MMP_RS03575 0.79 -0.2 671,057 + +0.5 671,088 - -0.1 671,089 + +0.2 671,143 + -0.1 671,143 + +0.2 671,144 - +0.2 671,144 - +0.1 671,152 + -0.3 671,185 - -0.3 671,312 + -0.8 671,410 + MMP_RS03580 0.18 -1.1 671,521 - MMP_RS03580 0.28 -1.2 671,606 - MMP_RS03580 0.36 -1.0 671,754 - MMP_RS03580 0.48 -0.7 671,960 + MMP_RS03580 0.66 -0.5 672,061 + MMP_RS03580 0.75 +0.1 672,382 - +1.3 672,392 + -1.7 672,412 - -0.5 672,416 + -0.1 672,422 + -0.1 672,425 - +0.2 672,425 - -1.9 672,434 - +0.1 672,507 + +0.4 672,507 + +0.4 672,666 - MMP_RS03585 0.33 -0.2 672,848 - MMP_RS03585 0.72 +0.4 673,000 - -0.2 673,028 + +0.2 673,050 - +0.2 673,052 - -0.6 673,096 - -0.8 673,274 - MMP_RS03590 0.27 -0.1 673,275 + MMP_RS03590 0.28 -0.8 673,275 + MMP_RS03590 0.28 +0.3 673,277 + MMP_RS03590 0.28 -0.2
Or see this region's nucleotide sequence