Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03015 and MMP_RS03020 are separated by 131 nucleotides MMP_RS03020 and MMP_RS03025 are separated by 110 nucleotides MMP_RS03025 and MMP_RS03030 are separated by 541 nucleotides MMP_RS03030 and MMP_RS03035 are separated by 17 nucleotides
MMP_RS03015: MMP_RS03015 - GTP 3' 8-cyclase MoaA, at 570,696 to 571,589
_RS03015
MMP_RS03020: MMP_RS03020 - peptidylprolyl isomerase, at 571,721 to 572,407
_RS03020
MMP_RS03025: MMP_RS03025 - molybdenum cofactor guanylyltransferase, at 572,518 to 573,162
_RS03025
MMP_RS03030: MMP_RS03030 - Asp-tRNA(Asn) amidotransferase subunit GatC, at 573,704 to 573,943
_RS03030
MMP_RS03035: MMP_RS03035 - 4-hydroxy-tetrahydrodipicolinate synthase, at 573,961 to 574,830
_RS03035
Position (kb) 572
573
574 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 571.668 kb on + strand at 571.709 kb on - strand at 571.723 kb on + strand at 571.863 kb on + strand, within MMP_RS03020 at 571.863 kb on + strand, within MMP_RS03020 at 571.863 kb on + strand, within MMP_RS03020 at 571.868 kb on - strand, within MMP_RS03020 at 571.941 kb on + strand, within MMP_RS03020 at 571.964 kb on - strand, within MMP_RS03020 at 572.054 kb on - strand, within MMP_RS03020 at 572.430 kb on - strand at 572.461 kb on - strand at 572.461 kb on - strand at 572.479 kb on - strand at 572.479 kb on - strand at 572.499 kb on + strand at 572.518 kb on + strand at 572.532 kb on - strand at 572.533 kb on + strand at 572.538 kb on + strand at 572.604 kb on + strand, within MMP_RS03025 at 572.614 kb on + strand, within MMP_RS03025 at 572.714 kb on + strand, within MMP_RS03025 at 572.716 kb on - strand, within MMP_RS03025 at 572.742 kb on - strand, within MMP_RS03025 at 572.867 kb on - strand, within MMP_RS03025 at 572.900 kb on - strand, within MMP_RS03025 at 572.901 kb on + strand, within MMP_RS03025 at 572.918 kb on - strand, within MMP_RS03025 at 572.918 kb on - strand, within MMP_RS03025 at 572.919 kb on + strand, within MMP_RS03025 at 572.919 kb on + strand, within MMP_RS03025 at 572.944 kb on + strand, within MMP_RS03025 at 572.965 kb on - strand, within MMP_RS03025 at 573.107 kb on - strand at 573.107 kb on - strand at 573.107 kb on - strand at 573.111 kb on - strand at 573.128 kb on - strand at 573.172 kb on - strand at 573.193 kb on + strand at 573.193 kb on + strand at 573.200 kb on + strand at 573.200 kb on + strand at 573.200 kb on + strand at 573.228 kb on - strand at 573.260 kb on - strand at 573.290 kb on - strand at 573.309 kb on - strand at 573.310 kb on + strand at 573.310 kb on + strand at 573.350 kb on + strand at 573.354 kb on - strand at 573.381 kb on - strand at 573.396 kb on - strand at 573.396 kb on - strand at 573.396 kb on - strand at 573.424 kb on - strand at 573.425 kb on + strand at 573.425 kb on + strand at 573.425 kb on + strand at 573.426 kb on - strand at 573.426 kb on - strand at 573.427 kb on + strand at 573.428 kb on - strand at 573.429 kb on + strand at 573.526 kb on - strand at 573.527 kb on + strand at 573.562 kb on + strand at 573.565 kb on - strand at 573.565 kb on - strand at 573.565 kb on - strand at 573.566 kb on + strand at 573.566 kb on + strand at 573.604 kb on + strand at 573.754 kb on - strand at 573.943 kb on - strand at 574.069 kb on + strand, within MMP_RS03035
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 571,668 + +0.2 571,709 - +0.5 571,723 + -0.3 571,863 + MMP_RS03020 0.21 -0.3 571,863 + MMP_RS03020 0.21 -0.1 571,863 + MMP_RS03020 0.21 +0.6 571,868 - MMP_RS03020 0.21 -0.1 571,941 + MMP_RS03020 0.32 -0.4 571,964 - MMP_RS03020 0.35 -0.2 572,054 - MMP_RS03020 0.48 -0.5 572,430 - +0.6 572,461 - -0.4 572,461 - -0.5 572,479 - -1.2 572,479 - -0.7 572,499 + -0.9 572,518 + -2.3 572,532 - -2.2 572,533 + -1.5 572,538 + -1.1 572,604 + MMP_RS03025 0.13 -1.8 572,614 + MMP_RS03025 0.15 -1.7 572,714 + MMP_RS03025 0.30 -1.6 572,716 - MMP_RS03025 0.31 -2.5 572,742 - MMP_RS03025 0.35 -1.8 572,867 - MMP_RS03025 0.54 -2.0 572,900 - MMP_RS03025 0.59 -1.9 572,901 + MMP_RS03025 0.59 -0.9 572,918 - MMP_RS03025 0.62 -1.3 572,918 - MMP_RS03025 0.62 -1.5 572,919 + MMP_RS03025 0.62 -0.4 572,919 + MMP_RS03025 0.62 -0.1 572,944 + MMP_RS03025 0.66 -1.8 572,965 - MMP_RS03025 0.69 -1.8 573,107 - -1.8 573,107 - -1.5 573,107 - -1.4 573,111 - -1.8 573,128 - -2.3 573,172 - +0.4 573,193 + +0.3 573,193 + -0.0 573,200 + +0.0 573,200 + +0.0 573,200 + +0.3 573,228 - -0.3 573,260 - -0.1 573,290 - -0.3 573,309 - +0.3 573,310 + +0.4 573,310 + -0.2 573,350 + -0.3 573,354 - -0.8 573,381 - -0.2 573,396 - -0.2 573,396 - -0.4 573,396 - -0.3 573,424 - -0.5 573,425 + -0.0 573,425 + -0.2 573,425 + -0.1 573,426 - -0.2 573,426 - +0.7 573,427 + -0.1 573,428 - -0.0 573,429 + +0.1 573,526 - +0.6 573,527 + +0.0 573,562 + +0.1 573,565 - -0.5 573,565 - -0.6 573,565 - -0.4 573,566 + +0.3 573,566 + +0.2 573,604 + -1.1 573,754 - -0.9 573,943 - -3.4 574,069 + MMP_RS03035 0.12 -2.4
Or see this region's nucleotide sequence