Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02850

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02840 and MMP_RS02845 are separated by 94 nucleotidesMMP_RS02845 and MMP_RS02850 are separated by 164 nucleotidesMMP_RS02850 and MMP_RS02855 are separated by 180 nucleotides MMP_RS02840: MMP_RS02840 - DUF123 domain-containing protein, at 541,501 to 542,571 _RS02840 MMP_RS02845: MMP_RS02845 - hypothetical protein, at 542,666 to 543,277 _RS02845 MMP_RS02850: MMP_RS02850 - hypothetical protein, at 543,442 to 543,732 _RS02850 MMP_RS02855: MMP_RS02855 - 3-isopropylmalate dehydrogenase, at 543,913 to 544,905 _RS02855 Position (kb) 543 544Strain fitness (log2 ratio) -1 0 1at 542.607 kb on - strandat 542.610 kb on - strandat 542.739 kb on - strand, within MMP_RS02845at 542.740 kb on + strand, within MMP_RS02845at 542.792 kb on - strand, within MMP_RS02845at 542.795 kb on + strand, within MMP_RS02845at 542.806 kb on - strand, within MMP_RS02845at 542.807 kb on + strand, within MMP_RS02845at 542.808 kb on - strand, within MMP_RS02845at 542.808 kb on - strand, within MMP_RS02845at 542.809 kb on + strand, within MMP_RS02845at 542.809 kb on + strand, within MMP_RS02845at 542.809 kb on + strand, within MMP_RS02845at 542.809 kb on + strand, within MMP_RS02845at 542.815 kb on + strand, within MMP_RS02845at 542.834 kb on + strand, within MMP_RS02845at 542.869 kb on - strand, within MMP_RS02845at 542.870 kb on + strand, within MMP_RS02845at 542.870 kb on + strand, within MMP_RS02845at 543.047 kb on + strand, within MMP_RS02845at 543.057 kb on - strand, within MMP_RS02845at 543.068 kb on - strand, within MMP_RS02845at 543.119 kb on + strand, within MMP_RS02845at 543.175 kb on + strand, within MMP_RS02845at 543.179 kb on - strand, within MMP_RS02845at 543.193 kb on - strand, within MMP_RS02845at 543.193 kb on - strand, within MMP_RS02845at 543.196 kb on + strand, within MMP_RS02845at 543.196 kb on + strand, within MMP_RS02845at 543.238 kb on - strandat 543.241 kb on - strandat 543.242 kb on + strandat 543.242 kb on + strandat 543.243 kb on - strandat 543.276 kb on + strandat 543.300 kb on - strandat 543.321 kb on + strandat 543.331 kb on + strandat 543.337 kb on + strandat 543.361 kb on + strandat 543.364 kb on - strandat 543.367 kb on - strandat 543.367 kb on - strandat 543.369 kb on - strandat 543.369 kb on - strandat 543.369 kb on - strandat 543.369 kb on - strandat 543.369 kb on - strandat 543.369 kb on - strandat 543.369 kb on - strandat 543.370 kb on + strandat 543.370 kb on + strandat 543.370 kb on + strandat 543.370 kb on + strandat 543.370 kb on + strandat 543.371 kb on - strandat 543.371 kb on - strandat 543.372 kb on + strandat 543.373 kb on - strandat 543.373 kb on - strandat 543.373 kb on - strandat 543.373 kb on - strandat 543.373 kb on - strandat 543.373 kb on - strandat 543.374 kb on + strandat 543.374 kb on + strandat 543.374 kb on + strandat 543.374 kb on + strandat 543.401 kb on - strandat 543.403 kb on - strandat 543.404 kb on + strandat 543.439 kb on + strandat 543.492 kb on - strand, within MMP_RS02850at 543.492 kb on - strand, within MMP_RS02850at 543.492 kb on - strand, within MMP_RS02850at 543.493 kb on + strand, within MMP_RS02850at 543.493 kb on + strand, within MMP_RS02850at 543.494 kb on - strand, within MMP_RS02850at 543.495 kb on + strand, within MMP_RS02850at 543.547 kb on + strand, within MMP_RS02850at 543.547 kb on + strand, within MMP_RS02850at 543.548 kb on - strand, within MMP_RS02850at 543.548 kb on - strand, within MMP_RS02850at 543.548 kb on - strand, within MMP_RS02850at 543.549 kb on + strand, within MMP_RS02850at 543.549 kb on + strand, within MMP_RS02850at 543.549 kb on + strand, within MMP_RS02850at 543.550 kb on - strand, within MMP_RS02850at 543.551 kb on + strand, within MMP_RS02850at 543.551 kb on + strand, within MMP_RS02850at 543.551 kb on + strand, within MMP_RS02850at 543.551 kb on + strand, within MMP_RS02850at 543.551 kb on + strand, within MMP_RS02850at 543.659 kb on + strand, within MMP_RS02850at 543.859 kb on - strandat 544.055 kb on - strandat 544.181 kb on - strandat 544.198 kb on - strandat 544.235 kb on + strandat 544.239 kb on + strandat 544.241 kb on - strandat 544.494 kb on - strandat 544.513 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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542,607 - -0.6
542,610 - -0.3
542,739 - MMP_RS02845 0.12 +0.1
542,740 + MMP_RS02845 0.12 +0.3
542,792 - MMP_RS02845 0.21 +0.4
542,795 + MMP_RS02845 0.21 -0.0
542,806 - MMP_RS02845 0.23 -0.0
542,807 + MMP_RS02845 0.23 +0.5
542,808 - MMP_RS02845 0.23 -0.4
542,808 - MMP_RS02845 0.23 +0.3
542,809 + MMP_RS02845 0.23 -0.7
542,809 + MMP_RS02845 0.23 -0.2
542,809 + MMP_RS02845 0.23 +0.4
542,809 + MMP_RS02845 0.23 +0.2
542,815 + MMP_RS02845 0.24 +0.2
542,834 + MMP_RS02845 0.27 +0.3
542,869 - MMP_RS02845 0.33 +0.7
542,870 + MMP_RS02845 0.33 -0.3
542,870 + MMP_RS02845 0.33 +0.3
543,047 + MMP_RS02845 0.62 +0.4
543,057 - MMP_RS02845 0.64 +0.2
543,068 - MMP_RS02845 0.66 -0.6
543,119 + MMP_RS02845 0.74 +0.2
543,175 + MMP_RS02845 0.83 -0.2
543,179 - MMP_RS02845 0.84 +0.5
543,193 - MMP_RS02845 0.86 -0.0
543,193 - MMP_RS02845 0.86 +0.0
543,196 + MMP_RS02845 0.87 +0.1
543,196 + MMP_RS02845 0.87 -0.1
543,238 - -0.7
543,241 - +1.6
543,242 + -0.3
543,242 + +0.2
543,243 - +0.2
543,276 + +0.2
543,300 - -0.1
543,321 + -0.4
543,331 + -0.1
543,337 + -0.3
543,361 + -0.6
543,364 - +0.1
543,367 - -0.1
543,367 - +0.6
543,369 - -0.1
543,369 - -1.5
543,369 - -0.2
543,369 - -0.6
543,369 - -0.1
543,369 - +0.0
543,369 - -0.3
543,370 + -0.3
543,370 + -0.3
543,370 + +0.0
543,370 + -0.0
543,370 + +0.0
543,371 - +0.2
543,371 - -0.3
543,372 + -0.1
543,373 - +0.7
543,373 - +0.1
543,373 - +0.2
543,373 - +0.1
543,373 - +0.0
543,373 - +0.3
543,374 + -0.1
543,374 + +0.3
543,374 + -0.7
543,374 + -0.0
543,401 - -0.0
543,403 - +0.4
543,404 + -0.4
543,439 + +0.2
543,492 - MMP_RS02850 0.17 -0.4
543,492 - MMP_RS02850 0.17 +0.1
543,492 - MMP_RS02850 0.17 +0.5
543,493 + MMP_RS02850 0.18 -0.4
543,493 + MMP_RS02850 0.18 +0.2
543,494 - MMP_RS02850 0.18 +0.1
543,495 + MMP_RS02850 0.18 -0.0
543,547 + MMP_RS02850 0.36 +0.5
543,547 + MMP_RS02850 0.36 +0.0
543,548 - MMP_RS02850 0.36 +0.2
543,548 - MMP_RS02850 0.36 -0.1
543,548 - MMP_RS02850 0.36 +0.4
543,549 + MMP_RS02850 0.37 +0.4
543,549 + MMP_RS02850 0.37 +0.2
543,549 + MMP_RS02850 0.37 -0.1
543,550 - MMP_RS02850 0.37 +0.1
543,551 + MMP_RS02850 0.37 +0.0
543,551 + MMP_RS02850 0.37 +0.1
543,551 + MMP_RS02850 0.37 +0.1
543,551 + MMP_RS02850 0.37 -0.1
543,551 + MMP_RS02850 0.37 -0.3
543,659 + MMP_RS02850 0.75 +0.1
543,859 - -1.0
544,055 - -1.0
544,181 - -0.3
544,198 - -1.1
544,235 + -0.7
544,239 + -1.4
544,241 - -1.1
544,494 - -1.3
544,513 - -1.4

Or see this region's nucleotide sequence