Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02810 and MMP_RS02815 are separated by 114 nucleotides MMP_RS02815 and MMP_RS02820 are separated by 6 nucleotides MMP_RS02820 and MMP_RS02825 are separated by 4 nucleotides MMP_RS02825 and MMP_RS02830 are separated by 0 nucleotides MMP_RS02830 and MMP_RS02835 are separated by 148 nucleotides
MMP_RS02810: MMP_RS02810 - hypothetical protein, at 536,793 to 538,262
_RS02810
MMP_RS02815: MMP_RS02815 - hypothetical protein, at 538,377 to 538,952
_RS02815
MMP_RS02820: MMP_RS02820 - hypothetical protein, at 538,959 to 539,189
_RS02820
MMP_RS02825: MMP_RS02825 - mechanosensitive ion channel family protein, at 539,194 to 540,276
_RS02825
MMP_RS02830: MMP_RS02830 - DUF432 domain-containing protein, at 540,277 to 540,915
_RS02830
MMP_RS02835: MMP_RS02835 - CGGC domain-containing protein, at 541,064 to 541,477
_RS02835
Position (kb) 539
540
541 Strain fitness (log2 ratio) -1
0
1 at 538.472 kb on - strand, within MMP_RS02815 at 538.847 kb on + strand, within MMP_RS02815 at 538.976 kb on - strand at 538.977 kb on + strand at 539.376 kb on - strand, within MMP_RS02825 at 539.405 kb on + strand, within MMP_RS02825 at 539.431 kb on - strand, within MMP_RS02825 at 539.435 kb on + strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.438 kb on - strand, within MMP_RS02825 at 539.439 kb on + strand, within MMP_RS02825 at 539.445 kb on - strand, within MMP_RS02825 at 539.456 kb on + strand, within MMP_RS02825 at 539.614 kb on + strand, within MMP_RS02825 at 539.724 kb on - strand, within MMP_RS02825 at 539.725 kb on + strand, within MMP_RS02825 at 539.766 kb on - strand, within MMP_RS02825 at 539.930 kb on - strand, within MMP_RS02825 at 539.931 kb on + strand, within MMP_RS02825 at 539.967 kb on + strand, within MMP_RS02825 at 540.013 kb on - strand, within MMP_RS02825 at 540.020 kb on - strand, within MMP_RS02825 at 540.021 kb on + strand, within MMP_RS02825 at 540.393 kb on - strand, within MMP_RS02830 at 540.538 kb on + strand, within MMP_RS02830 at 540.541 kb on - strand, within MMP_RS02830 at 540.542 kb on + strand, within MMP_RS02830 at 540.574 kb on - strand, within MMP_RS02830 at 540.575 kb on + strand, within MMP_RS02830 at 540.575 kb on + strand, within MMP_RS02830 at 540.629 kb on + strand, within MMP_RS02830 at 540.649 kb on - strand, within MMP_RS02830 at 540.678 kb on + strand, within MMP_RS02830 at 540.827 kb on - strand, within MMP_RS02830 at 540.915 kb on - strand at 540.919 kb on + strand at 540.921 kb on - strand at 540.922 kb on + strand at 540.923 kb on - strand at 540.923 kb on - strand at 540.923 kb on - strand at 540.923 kb on - strand at 540.923 kb on - strand at 540.925 kb on - strand at 540.925 kb on - strand at 540.925 kb on - strand at 540.925 kb on - strand at 540.926 kb on + strand at 540.972 kb on + strand at 541.175 kb on + strand, within MMP_RS02835 at 541.222 kb on - strand, within MMP_RS02835 at 541.238 kb on - strand, within MMP_RS02835
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 538,472 - MMP_RS02815 0.16 +0.2 538,847 + MMP_RS02815 0.82 +0.4 538,976 - +0.3 538,977 + +0.3 539,376 - MMP_RS02825 0.17 -0.7 539,405 + MMP_RS02825 0.19 +0.1 539,431 - MMP_RS02825 0.22 +0.1 539,435 + MMP_RS02825 0.22 +0.3 539,438 - MMP_RS02825 0.23 +0.5 539,438 - MMP_RS02825 0.23 -0.1 539,438 - MMP_RS02825 0.23 +0.3 539,438 - MMP_RS02825 0.23 -0.1 539,438 - MMP_RS02825 0.23 -0.5 539,439 + MMP_RS02825 0.23 +0.3 539,445 - MMP_RS02825 0.23 +0.1 539,456 + MMP_RS02825 0.24 +0.1 539,614 + MMP_RS02825 0.39 +0.6 539,724 - MMP_RS02825 0.49 -0.1 539,725 + MMP_RS02825 0.49 +0.1 539,766 - MMP_RS02825 0.53 +0.1 539,930 - MMP_RS02825 0.68 -0.2 539,931 + MMP_RS02825 0.68 +1.0 539,967 + MMP_RS02825 0.71 -0.1 540,013 - MMP_RS02825 0.76 +0.5 540,020 - MMP_RS02825 0.76 -0.3 540,021 + MMP_RS02825 0.76 +0.7 540,393 - MMP_RS02830 0.18 +0.2 540,538 + MMP_RS02830 0.41 -0.3 540,541 - MMP_RS02830 0.41 +0.2 540,542 + MMP_RS02830 0.41 -0.2 540,574 - MMP_RS02830 0.46 -0.6 540,575 + MMP_RS02830 0.47 -0.2 540,575 + MMP_RS02830 0.47 +0.1 540,629 + MMP_RS02830 0.55 -0.3 540,649 - MMP_RS02830 0.58 -0.1 540,678 + MMP_RS02830 0.63 -0.9 540,827 - MMP_RS02830 0.86 +0.0 540,915 - -0.0 540,919 + -0.1 540,921 - +0.6 540,922 + +0.2 540,923 - +1.3 540,923 - +0.3 540,923 - +0.2 540,923 - +0.5 540,923 - -0.3 540,925 - +0.2 540,925 - -0.4 540,925 - -0.5 540,925 - +0.1 540,926 + +0.3 540,972 + +0.3 541,175 + MMP_RS02835 0.27 -0.2 541,222 - MMP_RS02835 0.38 -0.3 541,238 - MMP_RS02835 0.42 +0.0
Or see this region's nucleotide sequence