Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02790

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02780 and MMP_RS02785 are separated by 13 nucleotidesMMP_RS02785 and MMP_RS02790 are separated by 1 nucleotidesMMP_RS02790 and MMP_RS02795 are separated by 424 nucleotides MMP_RS02780: MMP_RS02780 - hypothetical protein, at 531,638 to 532,351 _RS02780 MMP_RS02785: MMP_RS02785 - MarR family transcriptional regulator, at 532,365 to 532,985 _RS02785 MMP_RS02790: MMP_RS02790 - class III signal peptide-containing protein, at 532,987 to 533,208 _RS02790 MMP_RS02795: MMP_RS02795 - sulfate permease, at 533,633 to 535,291 _RS02795 Position (kb) 532 533 534Strain fitness (log2 ratio) -3 -2 -1 0 1at 531.987 kb on - strand, within MMP_RS02780at 531.988 kb on + strand, within MMP_RS02780at 531.993 kb on - strand, within MMP_RS02780at 532.009 kb on - strand, within MMP_RS02780at 532.049 kb on + strand, within MMP_RS02780at 532.086 kb on + strand, within MMP_RS02780at 532.174 kb on - strand, within MMP_RS02780at 532.190 kb on - strand, within MMP_RS02780at 532.191 kb on + strand, within MMP_RS02780at 532.195 kb on - strand, within MMP_RS02780at 532.195 kb on - strand, within MMP_RS02780at 532.196 kb on + strand, within MMP_RS02780at 532.197 kb on - strand, within MMP_RS02780at 532.197 kb on - strand, within MMP_RS02780at 532.197 kb on - strand, within MMP_RS02780at 532.198 kb on + strand, within MMP_RS02780at 532.198 kb on + strand, within MMP_RS02780at 532.198 kb on + strand, within MMP_RS02780at 532.201 kb on - strand, within MMP_RS02780at 532.201 kb on - strand, within MMP_RS02780at 532.250 kb on - strand, within MMP_RS02780at 532.250 kb on - strand, within MMP_RS02780at 532.251 kb on + strand, within MMP_RS02780at 532.251 kb on + strand, within MMP_RS02780at 532.286 kb on + strandat 532.286 kb on + strandat 532.289 kb on - strandat 532.345 kb on + strandat 532.349 kb on - strandat 532.384 kb on - strandat 532.392 kb on - strandat 532.392 kb on - strandat 532.392 kb on - strandat 532.392 kb on - strandat 532.393 kb on + strandat 532.393 kb on + strandat 532.394 kb on - strandat 532.403 kb on + strandat 532.420 kb on - strandat 532.486 kb on + strand, within MMP_RS02785at 532.508 kb on + strand, within MMP_RS02785at 532.510 kb on + strand, within MMP_RS02785at 532.519 kb on + strand, within MMP_RS02785at 532.541 kb on + strand, within MMP_RS02785at 532.556 kb on + strand, within MMP_RS02785at 532.573 kb on - strand, within MMP_RS02785at 532.616 kb on - strand, within MMP_RS02785at 532.828 kb on - strand, within MMP_RS02785at 532.906 kb on - strand, within MMP_RS02785at 532.922 kb on - strand, within MMP_RS02785at 532.942 kb on + strandat 532.954 kb on - strandat 532.982 kb on + strandat 532.983 kb on - strandat 533.038 kb on - strand, within MMP_RS02790at 533.225 kb on - strandat 533.248 kb on - strandat 533.249 kb on + strandat 533.253 kb on + strandat 533.253 kb on + strandat 533.253 kb on + strandat 533.272 kb on - strandat 533.273 kb on + strandat 533.274 kb on - strandat 533.274 kb on - strandat 533.274 kb on - strandat 533.274 kb on - strandat 533.274 kb on - strandat 533.274 kb on - strandat 533.275 kb on + strandat 533.275 kb on + strandat 533.275 kb on + strandat 533.275 kb on + strandat 533.275 kb on + strandat 533.275 kb on + strandat 533.275 kb on + strandat 533.276 kb on - strandat 533.276 kb on - strandat 533.276 kb on - strandat 533.276 kb on - strandat 533.276 kb on - strandat 533.276 kb on - strandat 533.277 kb on + strandat 533.277 kb on + strandat 533.303 kb on - strandat 533.303 kb on - strandat 533.324 kb on - strandat 533.500 kb on - strandat 533.560 kb on + strandat 533.598 kb on - strandat 533.598 kb on - strandat 533.599 kb on + strandat 533.616 kb on - strandat 533.634 kb on - strandat 533.634 kb on - strandat 533.634 kb on - strandat 533.708 kb on + strandat 533.932 kb on - strand, within MMP_RS02795at 533.933 kb on + strand, within MMP_RS02795at 534.095 kb on - strand, within MMP_RS02795at 534.096 kb on + strand, within MMP_RS02795at 534.125 kb on - strand, within MMP_RS02795at 534.203 kb on + strand, within MMP_RS02795

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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531,987 - MMP_RS02780 0.49 +0.1
531,988 + MMP_RS02780 0.49 -0.4
531,993 - MMP_RS02780 0.50 -0.1
532,009 - MMP_RS02780 0.52 -0.2
532,049 + MMP_RS02780 0.58 -0.1
532,086 + MMP_RS02780 0.63 -0.2
532,174 - MMP_RS02780 0.75 -0.1
532,190 - MMP_RS02780 0.77 +0.4
532,191 + MMP_RS02780 0.77 -0.4
532,195 - MMP_RS02780 0.78 +0.7
532,195 - MMP_RS02780 0.78 -2.8
532,196 + MMP_RS02780 0.78 +0.2
532,197 - MMP_RS02780 0.78 +0.1
532,197 - MMP_RS02780 0.78 +0.2
532,197 - MMP_RS02780 0.78 -0.3
532,198 + MMP_RS02780 0.78 -0.0
532,198 + MMP_RS02780 0.78 +1.4
532,198 + MMP_RS02780 0.78 +0.8
532,201 - MMP_RS02780 0.79 -0.1
532,201 - MMP_RS02780 0.79 -0.1
532,250 - MMP_RS02780 0.86 -1.0
532,250 - MMP_RS02780 0.86 +0.1
532,251 + MMP_RS02780 0.86 +0.1
532,251 + MMP_RS02780 0.86 -0.1
532,286 + -0.3
532,286 + +0.1
532,289 - +0.4
532,345 + +0.9
532,349 - -0.0
532,384 - -0.1
532,392 - -0.0
532,392 - +0.5
532,392 - -0.0
532,392 - +0.2
532,393 + +0.1
532,393 + +0.1
532,394 - +0.7
532,403 + -0.6
532,420 - +0.0
532,486 + MMP_RS02785 0.19 -0.2
532,508 + MMP_RS02785 0.23 +0.2
532,510 + MMP_RS02785 0.23 -0.1
532,519 + MMP_RS02785 0.25 -0.4
532,541 + MMP_RS02785 0.28 +0.6
532,556 + MMP_RS02785 0.31 -0.2
532,573 - MMP_RS02785 0.33 -0.4
532,616 - MMP_RS02785 0.40 -0.2
532,828 - MMP_RS02785 0.75 +0.1
532,906 - MMP_RS02785 0.87 -0.2
532,922 - MMP_RS02785 0.90 -0.1
532,942 + +0.3
532,954 - +1.0
532,982 + +0.6
532,983 - +0.1
533,038 - MMP_RS02790 0.23 -0.5
533,225 - +0.2
533,248 - +0.6
533,249 + +0.6
533,253 + -0.2
533,253 + +0.0
533,253 + +0.1
533,272 - -0.2
533,273 + +0.0
533,274 - +0.0
533,274 - -0.2
533,274 - +0.8
533,274 - -0.0
533,274 - +0.6
533,274 - +0.0
533,275 + -0.4
533,275 + -0.5
533,275 + +0.0
533,275 + -0.2
533,275 + -0.3
533,275 + -1.0
533,275 + -0.1
533,276 - +0.3
533,276 - -0.3
533,276 - +0.1
533,276 - -0.1
533,276 - +0.1
533,276 - -0.3
533,277 + -0.2
533,277 + +0.1
533,303 - +0.1
533,303 - -0.2
533,324 - +0.4
533,500 - +0.0
533,560 + +0.7
533,598 - +0.6
533,598 - +0.0
533,599 + -0.6
533,616 - +0.1
533,634 - -0.1
533,634 - -0.2
533,634 - +0.1
533,708 + +0.1
533,932 - MMP_RS02795 0.18 +0.3
533,933 + MMP_RS02795 0.18 -0.2
534,095 - MMP_RS02795 0.28 +0.3
534,096 + MMP_RS02795 0.28 +0.4
534,125 - MMP_RS02795 0.30 +0.2
534,203 + MMP_RS02795 0.34 +0.1

Or see this region's nucleotide sequence