Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01840

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01825 and MMP_RS01830 are separated by 105 nucleotidesMMP_RS01830 and MMP_RS01835 are separated by 110 nucleotidesMMP_RS01835 and MMP_RS01840 are separated by 0 nucleotidesMMP_RS01840 and MMP_RS01845 are separated by 52 nucleotides MMP_RS01825: MMP_RS01825 - acetyl-CoA carboxylase biotin carboxylase subunit, at 337,634 to 339,139 _RS01825 MMP_RS01830: MMP_RS01830 - tRNA-Val, at 339,245 to 339,321 _RS01830 MMP_RS01835: MMP_RS01835 - hypothetical protein, at 339,432 to 339,866 _RS01835 MMP_RS01840: MMP_RS01840 - TIGR00289 family protein, at 339,867 to 340,538 _RS01840 MMP_RS01845: MMP_RS01845 - hypothetical protein, at 340,591 to 341,472 _RS01845 Position (kb) 339 340 341Strain fitness (log2 ratio) -3 -2 -1 0 1at 338.887 kb on + strandat 338.949 kb on + strandat 338.959 kb on - strandat 339.094 kb on + strandat 339.122 kb on + strandat 339.152 kb on + strandat 339.155 kb on - strandat 339.160 kb on - strandat 339.160 kb on - strandat 339.166 kb on - strandat 339.166 kb on - strandat 339.206 kb on + strandat 339.215 kb on + strandat 339.224 kb on + strandat 339.234 kb on + strandat 339.240 kb on - strandat 339.257 kb on - strand, within MMP_RS01830at 339.258 kb on + strand, within MMP_RS01830at 339.451 kb on + strandat 339.530 kb on - strand, within MMP_RS01835at 339.535 kb on - strand, within MMP_RS01835at 339.558 kb on - strand, within MMP_RS01835at 339.635 kb on - strand, within MMP_RS01835at 339.635 kb on - strand, within MMP_RS01835at 339.636 kb on + strand, within MMP_RS01835at 339.736 kb on + strand, within MMP_RS01835at 339.737 kb on - strand, within MMP_RS01835at 339.763 kb on - strand, within MMP_RS01835at 339.765 kb on - strand, within MMP_RS01835at 339.812 kb on + strand, within MMP_RS01835at 339.865 kb on + strandat 339.899 kb on - strandat 339.942 kb on - strand, within MMP_RS01840at 339.951 kb on - strand, within MMP_RS01840at 340.266 kb on - strand, within MMP_RS01840at 340.267 kb on + strand, within MMP_RS01840at 340.338 kb on + strand, within MMP_RS01840at 340.340 kb on - strand, within MMP_RS01840at 340.345 kb on + strand, within MMP_RS01840at 340.417 kb on - strand, within MMP_RS01840at 340.453 kb on - strand, within MMP_RS01840at 340.453 kb on - strand, within MMP_RS01840at 340.453 kb on - strand, within MMP_RS01840at 340.454 kb on + strand, within MMP_RS01840at 340.454 kb on + strand, within MMP_RS01840at 340.708 kb on - strand, within MMP_RS01845at 340.711 kb on + strand, within MMP_RS01845at 340.714 kb on + strand, within MMP_RS01845at 340.726 kb on - strand, within MMP_RS01845at 340.763 kb on - strand, within MMP_RS01845at 340.763 kb on - strand, within MMP_RS01845at 340.769 kb on - strand, within MMP_RS01845at 340.769 kb on - strand, within MMP_RS01845at 340.774 kb on + strand, within MMP_RS01845at 340.781 kb on - strand, within MMP_RS01845at 340.790 kb on - strand, within MMP_RS01845at 340.791 kb on + strand, within MMP_RS01845at 340.848 kb on - strand, within MMP_RS01845at 340.888 kb on - strand, within MMP_RS01845at 340.888 kb on - strand, within MMP_RS01845at 340.888 kb on - strand, within MMP_RS01845at 340.889 kb on + strand, within MMP_RS01845at 340.918 kb on - strand, within MMP_RS01845at 341.012 kb on - strand, within MMP_RS01845at 341.044 kb on + strand, within MMP_RS01845at 341.070 kb on - strand, within MMP_RS01845at 341.132 kb on + strand, within MMP_RS01845at 341.133 kb on - strand, within MMP_RS01845at 341.139 kb on - strand, within MMP_RS01845at 341.140 kb on + strand, within MMP_RS01845at 341.140 kb on + strand, within MMP_RS01845at 341.140 kb on + strand, within MMP_RS01845at 341.142 kb on + strand, within MMP_RS01845at 341.181 kb on + strand, within MMP_RS01845at 341.218 kb on - strand, within MMP_RS01845at 341.219 kb on + strand, within MMP_RS01845at 341.221 kb on + strand, within MMP_RS01845at 341.249 kb on + strand, within MMP_RS01845at 341.330 kb on - strand, within MMP_RS01845at 341.330 kb on - strand, within MMP_RS01845at 341.472 kb on - strandat 341.472 kb on - strandat 341.475 kb on - strandat 341.475 kb on - strandat 341.476 kb on + strandat 341.476 kb on + strandat 341.476 kb on + strandat 341.476 kb on + strandat 341.501 kb on - strandat 341.501 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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338,887 + -1.9
338,949 + -0.4
338,959 - -2.8
339,094 + -0.7
339,122 + -0.1
339,152 + +0.1
339,155 - +0.0
339,160 - -0.3
339,160 - +0.2
339,166 - -0.4
339,166 - +0.8
339,206 + -0.4
339,215 + +0.6
339,224 + -0.1
339,234 + -0.3
339,240 - -0.6
339,257 - MMP_RS01830 0.16 -0.8
339,258 + MMP_RS01830 0.17 -0.9
339,451 + +0.4
339,530 - MMP_RS01835 0.23 +0.0
339,535 - MMP_RS01835 0.24 +0.4
339,558 - MMP_RS01835 0.29 +0.5
339,635 - MMP_RS01835 0.47 -0.3
339,635 - MMP_RS01835 0.47 -0.5
339,636 + MMP_RS01835 0.47 +0.0
339,736 + MMP_RS01835 0.70 +0.3
339,737 - MMP_RS01835 0.70 -0.1
339,763 - MMP_RS01835 0.76 -0.0
339,765 - MMP_RS01835 0.77 -0.1
339,812 + MMP_RS01835 0.87 -0.2
339,865 + +0.4
339,899 - -0.7
339,942 - MMP_RS01840 0.11 -0.3
339,951 - MMP_RS01840 0.12 -1.2
340,266 - MMP_RS01840 0.59 -0.5
340,267 + MMP_RS01840 0.60 -0.6
340,338 + MMP_RS01840 0.70 -0.4
340,340 - MMP_RS01840 0.70 -0.1
340,345 + MMP_RS01840 0.71 -1.1
340,417 - MMP_RS01840 0.82 -0.4
340,453 - MMP_RS01840 0.87 -0.3
340,453 - MMP_RS01840 0.87 -0.5
340,453 - MMP_RS01840 0.87 +0.2
340,454 + MMP_RS01840 0.87 -0.0
340,454 + MMP_RS01840 0.87 -0.6
340,708 - MMP_RS01845 0.13 +0.2
340,711 + MMP_RS01845 0.14 +0.3
340,714 + MMP_RS01845 0.14 -0.5
340,726 - MMP_RS01845 0.15 -0.3
340,763 - MMP_RS01845 0.20 -0.1
340,763 - MMP_RS01845 0.20 -0.2
340,769 - MMP_RS01845 0.20 -0.2
340,769 - MMP_RS01845 0.20 +0.1
340,774 + MMP_RS01845 0.21 -0.1
340,781 - MMP_RS01845 0.22 +0.1
340,790 - MMP_RS01845 0.23 +0.1
340,791 + MMP_RS01845 0.23 +0.3
340,848 - MMP_RS01845 0.29 +0.0
340,888 - MMP_RS01845 0.34 +0.5
340,888 - MMP_RS01845 0.34 +0.2
340,888 - MMP_RS01845 0.34 -0.1
340,889 + MMP_RS01845 0.34 +0.0
340,918 - MMP_RS01845 0.37 -0.0
341,012 - MMP_RS01845 0.48 -0.1
341,044 + MMP_RS01845 0.51 -0.3
341,070 - MMP_RS01845 0.54 -0.1
341,132 + MMP_RS01845 0.61 +0.4
341,133 - MMP_RS01845 0.61 -0.2
341,139 - MMP_RS01845 0.62 +0.0
341,140 + MMP_RS01845 0.62 +1.2
341,140 + MMP_RS01845 0.62 +0.1
341,140 + MMP_RS01845 0.62 +0.0
341,142 + MMP_RS01845 0.62 -0.6
341,181 + MMP_RS01845 0.67 +0.5
341,218 - MMP_RS01845 0.71 +0.1
341,219 + MMP_RS01845 0.71 -0.1
341,221 + MMP_RS01845 0.71 +0.2
341,249 + MMP_RS01845 0.75 -0.0
341,330 - MMP_RS01845 0.84 +0.4
341,330 - MMP_RS01845 0.84 -0.1
341,472 - -0.7
341,472 - +0.4
341,475 - -0.1
341,475 - -0.0
341,476 + +0.7
341,476 + +0.4
341,476 + -0.0
341,476 + -0.4
341,501 - +0.3
341,501 - +0.3

Or see this region's nucleotide sequence