Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01825 and MMP_RS01830 are separated by 105 nucleotides MMP_RS01830 and MMP_RS01835 are separated by 110 nucleotides MMP_RS01835 and MMP_RS01840 are separated by 0 nucleotides
MMP_RS01825: MMP_RS01825 - acetyl-CoA carboxylase biotin carboxylase subunit, at 337,634 to 339,139
_RS01825
MMP_RS01830: MMP_RS01830 - tRNA-Val, at 339,245 to 339,321
_RS01830
MMP_RS01835: MMP_RS01835 - hypothetical protein, at 339,432 to 339,866
_RS01835
MMP_RS01840: MMP_RS01840 - TIGR00289 family protein, at 339,867 to 340,538
_RS01840
Position (kb) 339
340 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 338.812 kb on - strand at 338.887 kb on + strand at 338.949 kb on + strand at 338.959 kb on - strand at 339.094 kb on + strand at 339.122 kb on + strand at 339.152 kb on + strand at 339.155 kb on - strand at 339.160 kb on - strand at 339.160 kb on - strand at 339.166 kb on - strand at 339.166 kb on - strand at 339.206 kb on + strand at 339.215 kb on + strand at 339.224 kb on + strand at 339.234 kb on + strand at 339.240 kb on - strand at 339.257 kb on - strand, within MMP_RS01830 at 339.258 kb on + strand, within MMP_RS01830 at 339.451 kb on + strand at 339.530 kb on - strand, within MMP_RS01835 at 339.535 kb on - strand, within MMP_RS01835 at 339.558 kb on - strand, within MMP_RS01835 at 339.635 kb on - strand, within MMP_RS01835 at 339.635 kb on - strand, within MMP_RS01835 at 339.636 kb on + strand, within MMP_RS01835 at 339.736 kb on + strand, within MMP_RS01835 at 339.737 kb on - strand, within MMP_RS01835 at 339.763 kb on - strand, within MMP_RS01835 at 339.765 kb on - strand, within MMP_RS01835 at 339.812 kb on + strand, within MMP_RS01835 at 339.865 kb on + strand at 339.899 kb on - strand at 339.942 kb on - strand, within MMP_RS01840 at 339.951 kb on - strand, within MMP_RS01840 at 340.266 kb on - strand, within MMP_RS01840 at 340.267 kb on + strand, within MMP_RS01840
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 338,812 - -3.0 338,887 + -1.9 338,949 + -0.4 338,959 - -2.8 339,094 + -0.7 339,122 + -0.1 339,152 + +0.1 339,155 - +0.0 339,160 - -0.3 339,160 - +0.2 339,166 - -0.4 339,166 - +0.8 339,206 + -0.4 339,215 + +0.6 339,224 + -0.1 339,234 + -0.3 339,240 - -0.6 339,257 - MMP_RS01830 0.16 -0.8 339,258 + MMP_RS01830 0.17 -0.9 339,451 + +0.4 339,530 - MMP_RS01835 0.23 +0.0 339,535 - MMP_RS01835 0.24 +0.4 339,558 - MMP_RS01835 0.29 +0.5 339,635 - MMP_RS01835 0.47 -0.3 339,635 - MMP_RS01835 0.47 -0.5 339,636 + MMP_RS01835 0.47 +0.0 339,736 + MMP_RS01835 0.70 +0.3 339,737 - MMP_RS01835 0.70 -0.1 339,763 - MMP_RS01835 0.76 -0.0 339,765 - MMP_RS01835 0.77 -0.1 339,812 + MMP_RS01835 0.87 -0.2 339,865 + +0.4 339,899 - -0.7 339,942 - MMP_RS01840 0.11 -0.3 339,951 - MMP_RS01840 0.12 -1.2 340,266 - MMP_RS01840 0.59 -0.5 340,267 + MMP_RS01840 0.60 -0.6
Or see this region's nucleotide sequence