Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01780 and MMP_RS01785 are separated by 70 nucleotides MMP_RS01785 and MMP_RS01790 are separated by 47 nucleotides MMP_RS01790 and MMP_RS01795 are separated by 16 nucleotides MMP_RS01795 and MMP_RS01800 are separated by 28 nucleotides
MMP_RS01780: MMP_RS01780 - TrmJ/YjtD family RNA methyltransferase, at 331,555 to 332,259
_RS01780
MMP_RS01785: MMP_RS01785 - hypothetical protein, at 332,330 to 332,743
_RS01785
MMP_RS01790: MMP_RS01790 - restriction endonuclease, at 332,791 to 333,198
_RS01790
MMP_RS01795: MMP_RS01795 - methanogenesis marker 6 protein, at 333,215 to 333,661
_RS01795
MMP_RS01800: MMP_RS01800 - TIGR00303 family protein, at 333,690 to 334,742
_RS01800
Position (kb) 333
334 Strain fitness (log2 ratio) -2
-1
0
1 at 332.228 kb on - strand at 332.245 kb on + strand at 332.258 kb on + strand at 332.294 kb on + strand at 332.296 kb on - strand at 332.336 kb on + strand at 332.337 kb on - strand at 332.372 kb on - strand, within MMP_RS01785 at 332.547 kb on - strand, within MMP_RS01785 at 332.547 kb on - strand, within MMP_RS01785 at 332.581 kb on - strand, within MMP_RS01785 at 332.674 kb on + strand, within MMP_RS01785 at 332.696 kb on - strand, within MMP_RS01785 at 332.696 kb on - strand, within MMP_RS01785 at 332.697 kb on + strand, within MMP_RS01785 at 332.697 kb on + strand, within MMP_RS01785 at 332.700 kb on - strand, within MMP_RS01785 at 332.700 kb on - strand, within MMP_RS01785 at 332.701 kb on + strand, within MMP_RS01785 at 332.727 kb on - strand at 332.731 kb on - strand at 332.779 kb on + strand at 332.779 kb on + strand at 332.788 kb on + strand at 332.789 kb on - strand at 332.789 kb on - strand at 332.790 kb on + strand at 332.790 kb on + strand at 332.792 kb on - strand at 333.021 kb on + strand, within MMP_RS01790 at 333.023 kb on - strand, within MMP_RS01790 at 333.023 kb on - strand, within MMP_RS01790 at 333.024 kb on + strand, within MMP_RS01790 at 333.045 kb on - strand, within MMP_RS01790 at 333.089 kb on + strand, within MMP_RS01790 at 333.154 kb on - strand, within MMP_RS01790 at 333.189 kb on - strand at 333.213 kb on + strand at 333.461 kb on + strand, within MMP_RS01795 at 333.467 kb on + strand, within MMP_RS01795 at 333.500 kb on - strand, within MMP_RS01795 at 333.672 kb on - strand at 333.736 kb on - strand at 333.829 kb on - strand, within MMP_RS01800 at 334.047 kb on - strand, within MMP_RS01800 at 334.048 kb on + strand, within MMP_RS01800 at 334.059 kb on + strand, within MMP_RS01800 at 334.222 kb on + strand, within MMP_RS01800 at 334.537 kb on + strand, within MMP_RS01800 at 334.569 kb on - strand, within MMP_RS01800 at 334.572 kb on + strand, within MMP_RS01800 at 334.576 kb on + strand, within MMP_RS01800 at 334.603 kb on - strand, within MMP_RS01800
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 332,228 - -0.7 332,245 + -0.5 332,258 + +0.2 332,294 + -0.5 332,296 - -0.4 332,336 + +0.5 332,337 - -0.1 332,372 - MMP_RS01785 0.10 +0.5 332,547 - MMP_RS01785 0.52 +0.4 332,547 - MMP_RS01785 0.52 -0.3 332,581 - MMP_RS01785 0.61 +0.0 332,674 + MMP_RS01785 0.83 -0.3 332,696 - MMP_RS01785 0.88 -0.6 332,696 - MMP_RS01785 0.88 -0.1 332,697 + MMP_RS01785 0.89 +0.2 332,697 + MMP_RS01785 0.89 +0.5 332,700 - MMP_RS01785 0.89 +0.2 332,700 - MMP_RS01785 0.89 +0.4 332,701 + MMP_RS01785 0.90 -0.3 332,727 - -0.2 332,731 - +0.7 332,779 + +0.0 332,779 + +0.3 332,788 + +0.2 332,789 - +0.4 332,789 - +0.7 332,790 + +0.5 332,790 + +0.4 332,792 - +1.4 333,021 + MMP_RS01790 0.56 +0.1 333,023 - MMP_RS01790 0.57 -0.1 333,023 - MMP_RS01790 0.57 -0.4 333,024 + MMP_RS01790 0.57 +0.3 333,045 - MMP_RS01790 0.62 -0.4 333,089 + MMP_RS01790 0.73 +0.1 333,154 - MMP_RS01790 0.89 -0.5 333,189 - -0.2 333,213 + +0.0 333,461 + MMP_RS01795 0.55 -1.1 333,467 + MMP_RS01795 0.56 -0.5 333,500 - MMP_RS01795 0.64 +0.0 333,672 - -0.7 333,736 - +0.9 333,829 - MMP_RS01800 0.13 -1.8 334,047 - MMP_RS01800 0.34 -0.8 334,048 + MMP_RS01800 0.34 -0.4 334,059 + MMP_RS01800 0.35 -0.4 334,222 + MMP_RS01800 0.51 -0.4 334,537 + MMP_RS01800 0.80 -1.5 334,569 - MMP_RS01800 0.83 -1.2 334,572 + MMP_RS01800 0.84 -0.9 334,576 + MMP_RS01800 0.84 -0.1 334,603 - MMP_RS01800 0.87 -0.6
Or see this region's nucleotide sequence