Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00840 and MMP_RS00845 are separated by 310 nucleotides MMP_RS00845 and MMP_RS00850 are separated by 33 nucleotides
MMP_RS00840: MMP_RS00840 - nitrogenase iron protein, at 156,832 to 157,710
_RS00840
MMP_RS00845: MMP_RS00845 - acetate--CoA ligase, at 158,021 to 159,931
_RS00845
MMP_RS00850: MMP_RS00850 - TIGR01177 family methyltransferase, at 159,965 to 161,017
_RS00850
Position (kb) 158
159
160 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 157.191 kb on - strand at 157.766 kb on - strand at 157.767 kb on + strand at 157.770 kb on + strand at 157.770 kb on + strand at 157.774 kb on + strand at 157.775 kb on - strand at 157.789 kb on + strand at 157.789 kb on + strand at 157.789 kb on + strand at 157.789 kb on + strand at 157.791 kb on - strand at 157.807 kb on - strand at 157.812 kb on - strand at 157.813 kb on + strand at 157.851 kb on - strand at 158.040 kb on + strand at 158.387 kb on - strand, within MMP_RS00845 at 158.387 kb on - strand, within MMP_RS00845 at 158.520 kb on - strand, within MMP_RS00845 at 158.624 kb on - strand, within MMP_RS00845 at 158.655 kb on - strand, within MMP_RS00845 at 158.916 kb on - strand, within MMP_RS00845 at 158.919 kb on - strand, within MMP_RS00845 at 158.922 kb on + strand, within MMP_RS00845 at 158.922 kb on + strand, within MMP_RS00845 at 159.061 kb on - strand, within MMP_RS00845 at 159.099 kb on - strand, within MMP_RS00845 at 159.165 kb on + strand, within MMP_RS00845 at 159.172 kb on + strand, within MMP_RS00845 at 159.232 kb on - strand, within MMP_RS00845 at 159.233 kb on + strand, within MMP_RS00845 at 159.235 kb on - strand, within MMP_RS00845 at 159.235 kb on - strand, within MMP_RS00845 at 159.237 kb on - strand, within MMP_RS00845 at 159.237 kb on - strand, within MMP_RS00845 at 159.237 kb on - strand, within MMP_RS00845 at 159.237 kb on - strand, within MMP_RS00845 at 159.238 kb on + strand, within MMP_RS00845 at 159.238 kb on + strand, within MMP_RS00845 at 159.669 kb on - strand, within MMP_RS00845 at 159.929 kb on - strand at 159.988 kb on - strand at 159.988 kb on - strand at 159.988 kb on - strand at 159.989 kb on + strand at 159.998 kb on + strand at 160.077 kb on + strand, within MMP_RS00850 at 160.119 kb on + strand, within MMP_RS00850 at 160.185 kb on + strand, within MMP_RS00850 at 160.344 kb on + strand, within MMP_RS00850 at 160.481 kb on - strand, within MMP_RS00850 at 160.542 kb on - strand, within MMP_RS00850 at 160.787 kb on - strand, within MMP_RS00850
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 157,191 - -0.8 157,766 - -3.3 157,767 + -0.9 157,770 + -0.4 157,770 + -0.0 157,774 + -1.1 157,775 - -0.3 157,789 + -0.7 157,789 + +0.3 157,789 + +0.3 157,789 + -0.7 157,791 - -0.0 157,807 - +0.0 157,812 - -0.1 157,813 + -0.2 157,851 - +0.1 158,040 + -0.3 158,387 - MMP_RS00845 0.19 -0.6 158,387 - MMP_RS00845 0.19 -0.5 158,520 - MMP_RS00845 0.26 +0.2 158,624 - MMP_RS00845 0.32 -0.4 158,655 - MMP_RS00845 0.33 +0.3 158,916 - MMP_RS00845 0.47 -0.2 158,919 - MMP_RS00845 0.47 +0.1 158,922 + MMP_RS00845 0.47 -0.2 158,922 + MMP_RS00845 0.47 -0.1 159,061 - MMP_RS00845 0.54 +0.6 159,099 - MMP_RS00845 0.56 -0.0 159,165 + MMP_RS00845 0.60 +0.2 159,172 + MMP_RS00845 0.60 +0.0 159,232 - MMP_RS00845 0.63 -0.2 159,233 + MMP_RS00845 0.63 +0.8 159,235 - MMP_RS00845 0.64 +0.4 159,235 - MMP_RS00845 0.64 -0.0 159,237 - MMP_RS00845 0.64 +0.5 159,237 - MMP_RS00845 0.64 -0.2 159,237 - MMP_RS00845 0.64 -0.3 159,237 - MMP_RS00845 0.64 -0.2 159,238 + MMP_RS00845 0.64 -0.6 159,238 + MMP_RS00845 0.64 +0.0 159,669 - MMP_RS00845 0.86 -0.0 159,929 - -0.0 159,988 - +0.5 159,988 - +0.2 159,988 - +0.2 159,989 + +0.2 159,998 + -0.5 160,077 + MMP_RS00850 0.11 -0.0 160,119 + MMP_RS00850 0.15 +0.2 160,185 + MMP_RS00850 0.21 -0.4 160,344 + MMP_RS00850 0.36 +0.0 160,481 - MMP_RS00850 0.49 +0.7 160,542 - MMP_RS00850 0.55 -0.2 160,787 - MMP_RS00850 0.78 +0.1
Or see this region's nucleotide sequence