Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00685

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00680 and MMP_RS00685 are separated by 23 nucleotidesMMP_RS00685 and MMP_RS00690 are separated by 46 nucleotidesMMP_RS00690 and MMP_RS00695 are separated by 12 nucleotides MMP_RS00680: MMP_RS00680 - N-acetyl-gamma-glutamyl-phosphate reductase, at 124,154 to 125,185 _RS00680 MMP_RS00685: MMP_RS00685 - 2-phospho-L-lactate guanylyltransferase, at 125,209 to 125,877 _RS00685 MMP_RS00690: MMP_RS00690 - MBL fold metallo-hydrolase, at 125,924 to 126,541 _RS00690 MMP_RS00695: MMP_RS00695 - biotin--[acetyl-CoA-carboxylase] ligase, at 126,554 to 127,249 _RS00695 Position (kb) 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1at 124.339 kb on - strandat 124.480 kb on - strandat 124.484 kb on - strandat 124.485 kb on + strandat 124.873 kb on + strandat 124.907 kb on + strandat 124.907 kb on + strandat 124.908 kb on - strandat 124.908 kb on - strandat 124.908 kb on - strandat 124.909 kb on + strandat 124.946 kb on - strandat 125.264 kb on + strandat 125.289 kb on + strand, within MMP_RS00685at 125.289 kb on + strand, within MMP_RS00685at 125.344 kb on - strand, within MMP_RS00685at 125.344 kb on - strand, within MMP_RS00685at 125.351 kb on + strand, within MMP_RS00685at 125.351 kb on + strand, within MMP_RS00685at 125.358 kb on - strand, within MMP_RS00685at 125.785 kb on - strand, within MMP_RS00685at 125.906 kb on - strandat 125.925 kb on - strandat 125.930 kb on + strandat 125.958 kb on + strandat 125.988 kb on + strand, within MMP_RS00690at 126.008 kb on + strand, within MMP_RS00690at 126.009 kb on - strand, within MMP_RS00690at 126.131 kb on - strand, within MMP_RS00690at 126.170 kb on - strand, within MMP_RS00690at 126.263 kb on + strand, within MMP_RS00690at 126.271 kb on - strand, within MMP_RS00690at 126.280 kb on - strand, within MMP_RS00690at 126.305 kb on - strand, within MMP_RS00690at 126.305 kb on - strand, within MMP_RS00690at 126.305 kb on - strand, within MMP_RS00690at 126.318 kb on + strand, within MMP_RS00690at 126.391 kb on - strand, within MMP_RS00690at 126.391 kb on - strand, within MMP_RS00690at 126.396 kb on - strand, within MMP_RS00690at 126.491 kb on - strandat 126.671 kb on - strand, within MMP_RS00695at 126.821 kb on - strand, within MMP_RS00695

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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124,339 - -1.2
124,480 - -1.7
124,484 - +0.4
124,485 + -0.6
124,873 + -0.6
124,907 + -1.4
124,907 + -2.3
124,908 - -1.6
124,908 - -1.2
124,908 - -1.6
124,909 + -0.7
124,946 - +0.1
125,264 + -0.8
125,289 + MMP_RS00685 0.12 -3.4
125,289 + MMP_RS00685 0.12 -1.4
125,344 - MMP_RS00685 0.20 -0.9
125,344 - MMP_RS00685 0.20 -2.0
125,351 + MMP_RS00685 0.21 -0.8
125,351 + MMP_RS00685 0.21 -1.5
125,358 - MMP_RS00685 0.22 -1.4
125,785 - MMP_RS00685 0.86 -2.7
125,906 - +0.3
125,925 - -0.0
125,930 + +0.2
125,958 + +1.1
125,988 + MMP_RS00690 0.10 -0.5
126,008 + MMP_RS00690 0.14 +0.0
126,009 - MMP_RS00690 0.14 -0.6
126,131 - MMP_RS00690 0.33 -0.1
126,170 - MMP_RS00690 0.40 -0.3
126,263 + MMP_RS00690 0.55 +0.6
126,271 - MMP_RS00690 0.56 +0.1
126,280 - MMP_RS00690 0.58 +0.2
126,305 - MMP_RS00690 0.62 +0.4
126,305 - MMP_RS00690 0.62 +0.1
126,305 - MMP_RS00690 0.62 -0.1
126,318 + MMP_RS00690 0.64 -0.7
126,391 - MMP_RS00690 0.76 +0.4
126,391 - MMP_RS00690 0.76 +0.0
126,396 - MMP_RS00690 0.76 +0.2
126,491 - +0.3
126,671 - MMP_RS00695 0.17 -0.3
126,821 - MMP_RS00695 0.38 -1.8

Or see this region's nucleotide sequence