Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00100 and MMP_RS00105 are separated by 12 nucleotides MMP_RS00105 and MMP_RS00110 are separated by 14 nucleotides MMP_RS00110 and MMP_RS00115 are separated by 120 nucleotides
MMP_RS00100: MMP_RS00100 - tRNA pseudouridine(13) synthase TruD, at 24,061 to 25,230
_RS00100
MMP_RS00105: MMP_RS00105 - hypothetical protein, at 25,243 to 26,046
_RS00105
MMP_RS00110: MMP_RS00110 - hypothetical protein, at 26,061 to 26,552
_RS00110
MMP_RS00115: MMP_RS00115 - radical SAM protein, at 26,673 to 27,725
_RS00115
Position (kb) 26
27 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 25.183 kb on - strand at 25.196 kb on + strand at 25.239 kb on - strand at 25.240 kb on + strand at 25.265 kb on + strand at 25.274 kb on + strand at 25.278 kb on - strand at 25.279 kb on + strand at 25.408 kb on + strand, within MMP_RS00105 at 25.519 kb on + strand, within MMP_RS00105 at 25.557 kb on + strand, within MMP_RS00105 at 25.741 kb on + strand, within MMP_RS00105 at 25.784 kb on + strand, within MMP_RS00105 at 25.789 kb on - strand, within MMP_RS00105 at 25.789 kb on - strand, within MMP_RS00105 at 25.789 kb on - strand, within MMP_RS00105 at 25.793 kb on + strand, within MMP_RS00105 at 25.867 kb on + strand, within MMP_RS00105 at 25.899 kb on - strand, within MMP_RS00105 at 25.904 kb on - strand, within MMP_RS00105 at 25.905 kb on + strand, within MMP_RS00105 at 25.905 kb on + strand, within MMP_RS00105 at 26.026 kb on - strand at 26.028 kb on - strand at 26.049 kb on - strand at 26.099 kb on - strand at 26.109 kb on - strand at 26.110 kb on + strand at 26.122 kb on - strand, within MMP_RS00110 at 26.123 kb on + strand, within MMP_RS00110 at 26.355 kb on - strand, within MMP_RS00110 at 26.368 kb on - strand, within MMP_RS00110 at 26.412 kb on - strand, within MMP_RS00110 at 26.413 kb on + strand, within MMP_RS00110 at 26.564 kb on - strand at 26.587 kb on - strand at 26.587 kb on - strand at 26.587 kb on - strand at 26.600 kb on - strand at 26.600 kb on - strand at 26.600 kb on - strand at 26.600 kb on - strand at 26.600 kb on - strand at 26.600 kb on - strand at 26.601 kb on + strand at 26.601 kb on + strand at 26.601 kb on + strand at 26.601 kb on + strand at 26.601 kb on + strand at 26.601 kb on + strand at 26.602 kb on - strand at 26.602 kb on - strand at 26.602 kb on - strand at 26.602 kb on - strand at 26.602 kb on - strand at 26.602 kb on - strand at 26.603 kb on + strand at 26.603 kb on + strand at 26.603 kb on + strand at 26.603 kb on + strand at 26.603 kb on + strand at 26.604 kb on - strand at 26.604 kb on - strand at 26.604 kb on - strand at 26.604 kb on - strand at 26.604 kb on - strand at 26.604 kb on - strand at 26.605 kb on + strand at 26.605 kb on + strand at 26.605 kb on + strand at 26.605 kb on + strand at 26.605 kb on + strand at 26.605 kb on + strand at 26.605 kb on + strand at 26.607 kb on + strand at 26.635 kb on - strand at 26.654 kb on + strand at 26.654 kb on + strand at 26.660 kb on - strand at 26.660 kb on - strand at 26.660 kb on - strand at 26.661 kb on + strand at 26.665 kb on + strand at 26.665 kb on + strand at 26.665 kb on + strand at 26.666 kb on - strand at 26.667 kb on + strand at 26.670 kb on + strand at 26.670 kb on + strand at 26.670 kb on + strand at 26.671 kb on - strand at 26.672 kb on + strand at 26.672 kb on + strand at 26.702 kb on - strand at 26.750 kb on - strand at 26.751 kb on + strand at 26.751 kb on + strand at 26.774 kb on - strand at 26.774 kb on - strand at 26.794 kb on - strand, within MMP_RS00115 at 26.794 kb on - strand, within MMP_RS00115 at 26.829 kb on - strand, within MMP_RS00115 at 26.852 kb on - strand, within MMP_RS00115 at 26.855 kb on + strand, within MMP_RS00115 at 26.856 kb on - strand, within MMP_RS00115 at 26.856 kb on - strand, within MMP_RS00115 at 26.856 kb on - strand, within MMP_RS00115 at 26.856 kb on - strand, within MMP_RS00115 at 26.856 kb on - strand, within MMP_RS00115 at 26.857 kb on + strand, within MMP_RS00115 at 26.857 kb on + strand, within MMP_RS00115 at 26.857 kb on + strand, within MMP_RS00115 at 26.857 kb on + strand, within MMP_RS00115 at 26.915 kb on + strand, within MMP_RS00115 at 26.939 kb on - strand, within MMP_RS00115 at 26.940 kb on + strand, within MMP_RS00115 at 26.944 kb on + strand, within MMP_RS00115 at 26.981 kb on - strand, within MMP_RS00115 at 26.987 kb on - strand, within MMP_RS00115 at 27.057 kb on + strand, within MMP_RS00115 at 27.209 kb on - strand, within MMP_RS00115 at 27.387 kb on - strand, within MMP_RS00115 at 27.413 kb on + strand, within MMP_RS00115 at 27.473 kb on - strand, within MMP_RS00115 at 27.492 kb on - strand, within MMP_RS00115 at 27.493 kb on + strand, within MMP_RS00115
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 25,183 - +0.1 25,196 + -0.4 25,239 - +0.1 25,240 + -0.1 25,265 + -0.3 25,274 + -0.1 25,278 - -0.2 25,279 + +0.2 25,408 + MMP_RS00105 0.21 +0.3 25,519 + MMP_RS00105 0.34 -0.3 25,557 + MMP_RS00105 0.39 +0.3 25,741 + MMP_RS00105 0.62 -0.1 25,784 + MMP_RS00105 0.67 +0.2 25,789 - MMP_RS00105 0.68 -0.0 25,789 - MMP_RS00105 0.68 -0.2 25,789 - MMP_RS00105 0.68 +0.3 25,793 + MMP_RS00105 0.68 +0.6 25,867 + MMP_RS00105 0.78 -0.4 25,899 - MMP_RS00105 0.82 -0.4 25,904 - MMP_RS00105 0.82 +0.5 25,905 + MMP_RS00105 0.82 -0.0 25,905 + MMP_RS00105 0.82 +0.7 26,026 - -0.0 26,028 - -0.3 26,049 - -0.2 26,099 - +0.0 26,109 - -0.3 26,110 + -0.1 26,122 - MMP_RS00110 0.12 -0.5 26,123 + MMP_RS00110 0.13 -2.9 26,355 - MMP_RS00110 0.60 -0.9 26,368 - MMP_RS00110 0.62 -0.3 26,412 - MMP_RS00110 0.71 -1.0 26,413 + MMP_RS00110 0.72 -1.4 26,564 - -0.3 26,587 - -0.2 26,587 - +0.5 26,587 - +0.1 26,600 - +0.6 26,600 - +0.3 26,600 - -0.0 26,600 - +0.5 26,600 - +0.4 26,600 - +0.0 26,601 + +0.1 26,601 + -0.6 26,601 + -0.3 26,601 + -0.4 26,601 + -0.3 26,601 + +0.0 26,602 - -0.4 26,602 - -0.2 26,602 - +0.1 26,602 - +0.5 26,602 - -0.3 26,602 - +0.1 26,603 + -0.2 26,603 + +0.9 26,603 + -0.2 26,603 + -0.1 26,603 + -0.0 26,604 - +0.7 26,604 - +0.2 26,604 - -0.1 26,604 - +0.0 26,604 - +0.1 26,604 - +0.3 26,605 + -0.3 26,605 + -0.1 26,605 + +0.5 26,605 + -0.0 26,605 + -0.1 26,605 + +0.3 26,605 + +0.9 26,607 + -0.0 26,635 - -0.3 26,654 + +0.3 26,654 + -0.7 26,660 - +0.5 26,660 - +0.3 26,660 - -0.2 26,661 + +0.0 26,665 + +0.1 26,665 + -0.1 26,665 + +0.3 26,666 - -0.1 26,667 + +0.4 26,670 + -0.8 26,670 + -0.4 26,670 + -0.2 26,671 - +0.7 26,672 + -0.4 26,672 + +0.2 26,702 - +0.1 26,750 - -2.3 26,751 + -2.3 26,751 + -1.4 26,774 - -1.4 26,774 - -1.3 26,794 - MMP_RS00115 0.11 -1.9 26,794 - MMP_RS00115 0.11 -1.5 26,829 - MMP_RS00115 0.15 -1.9 26,852 - MMP_RS00115 0.17 -0.1 26,855 + MMP_RS00115 0.17 -1.6 26,856 - MMP_RS00115 0.17 -2.1 26,856 - MMP_RS00115 0.17 -2.4 26,856 - MMP_RS00115 0.17 -2.2 26,856 - MMP_RS00115 0.17 -1.1 26,856 - MMP_RS00115 0.17 -1.3 26,857 + MMP_RS00115 0.17 -2.8 26,857 + MMP_RS00115 0.17 -1.3 26,857 + MMP_RS00115 0.17 -1.9 26,857 + MMP_RS00115 0.17 -0.9 26,915 + MMP_RS00115 0.23 -1.4 26,939 - MMP_RS00115 0.25 -2.0 26,940 + MMP_RS00115 0.25 -1.7 26,944 + MMP_RS00115 0.26 -0.9 26,981 - MMP_RS00115 0.29 -2.1 26,987 - MMP_RS00115 0.30 -1.2 27,057 + MMP_RS00115 0.36 -1.7 27,209 - MMP_RS00115 0.51 -1.2 27,387 - MMP_RS00115 0.68 -1.9 27,413 + MMP_RS00115 0.70 -1.2 27,473 - MMP_RS00115 0.76 -2.4 27,492 - MMP_RS00115 0.78 -2.4 27,493 + MMP_RS00115 0.78 -0.9
Or see this region's nucleotide sequence