Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS12945

Experiment: a-Cyclodextrin 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin 20 mM
2,890,966	-		LRK54_RS12935	0.59	-0.6
2,890,966	-		LRK54_RS12935	0.59	+0.8
2,890,966	-		LRK54_RS12935	0.59	+1.0
2,890,966	-		LRK54_RS12935	0.59	-1.1
2,890,966	-		LRK54_RS12935	0.59	-0.2
2,890,966	-		LRK54_RS12935	0.59	-0.3
2,890,966	-		LRK54_RS12935	0.59	-0.3
2,890,966	-		LRK54_RS12935	0.59	-1.0
2,890,966	-		LRK54_RS12935	0.59	+0.1
2,890,971	+		LRK54_RS12935	0.59	-3.6
2,890,971	+		LRK54_RS12935	0.59	-0.2
2,890,971	+		LRK54_RS12935	0.59	-2.3
2,890,971	+		LRK54_RS12935	0.59	-1.4
2,890,971	+		LRK54_RS12935	0.59	-0.4
2,890,971	+		LRK54_RS12935	0.59	-2.3
2,890,971	+		LRK54_RS12935	0.59	-0.9
2,890,971	+		LRK54_RS12935	0.59	-1.8
2,890,971	+		LRK54_RS12935	0.59	-0.8
2,890,971	+		LRK54_RS12935	0.59	-1.8
2,890,971	+		LRK54_RS12935	0.59	-2.0
2,890,971	+		LRK54_RS12935	0.59	-0.4
2,890,971	+		LRK54_RS12935	0.59	-0.3
2,890,972	-		LRK54_RS12935	0.60	-2.2
2,890,972	-		LRK54_RS12935	0.60	+0.0
2,890,972	-		LRK54_RS12935	0.60	-0.5
2,890,972	-		LRK54_RS12935	0.60	-1.8
2,890,972	-		LRK54_RS12935	0.60	-0.2
2,890,972	-		LRK54_RS12935	0.60	-1.9
2,890,972	-		LRK54_RS12935	0.60	-1.1
2,890,972	-		LRK54_RS12935	0.60	-0.4
2,890,972	-		LRK54_RS12935	0.60	-0.9
2,890,972	-		LRK54_RS12935	0.60	-0.9
2,890,972	-		LRK54_RS12935	0.60	+0.1
2,890,972	-		LRK54_RS12935	0.60	-0.8
2,890,972	-		LRK54_RS12935	0.60	+0.2
2,890,972	-		LRK54_RS12935	0.60	-0.3
2,890,972	-		LRK54_RS12935	0.60	+0.1
2,891,079	+		LRK54_RS12935	0.75	-2.2
2,891,079	+		LRK54_RS12935	0.75	+1.0
2,891,079	+		LRK54_RS12935	0.75	-1.3
2,891,079	+		LRK54_RS12935	0.75	+0.3
2,891,079	+		LRK54_RS12935	0.75	-1.3
2,891,079	+		LRK54_RS12935	0.75	+1.0
2,891,079	+		LRK54_RS12935	0.75	-0.2
2,891,079	+		LRK54_RS12935	0.75	-0.5
2,891,079	+		LRK54_RS12935	0.75	-2.2
2,891,080	-		LRK54_RS12935	0.75	-0.7
2,891,080	-		LRK54_RS12935	0.75	+4.3
2,891,080	-		LRK54_RS12935	0.75	-1.9
2,891,080	-		LRK54_RS12935	0.75	-1.4
2,891,080	-		LRK54_RS12935	0.75	-0.4
2,891,157	+		LRK54_RS12935	0.86	-1.1
2,891,157	+		LRK54_RS12935	0.86	-1.3
2,891,157	+		LRK54_RS12935	0.86	-0.1
2,891,157	+		LRK54_RS12935	0.86	-1.3
2,891,157	+		LRK54_RS12935	0.86	-1.5
2,891,157	+		LRK54_RS12935	0.86	-1.5
2,891,157	+		LRK54_RS12935	0.86	-1.9
2,891,157	+		LRK54_RS12935	0.86	-0.4
2,891,157	+		LRK54_RS12935	0.86	-0.4
2,891,157	+		LRK54_RS12935	0.86	-0.6
2,891,157	+		LRK54_RS12935	0.86	-3.3
2,891,157	+		LRK54_RS12935	0.86	-1.2
2,891,157	+		LRK54_RS12935	0.86	-1.0
2,891,157	+		LRK54_RS12935	0.86	-0.3
2,891,157	+		LRK54_RS12935	0.86	-1.3
2,891,157	+		LRK54_RS12935	0.86	-1.5
2,891,157	+		LRK54_RS12935	0.86	-1.2
2,891,157	+		LRK54_RS12935	0.86	+2.9
2,891,157	+		LRK54_RS12935	0.86	-0.4
2,891,157	+		LRK54_RS12935	0.86	-1.1
2,891,157	+		LRK54_RS12935	0.86	-0.9
2,891,157	+		LRK54_RS12935	0.86	-0.4
2,891,157	+		LRK54_RS12935	0.86	-0.2
2,891,157	+		LRK54_RS12935	0.86	-0.1
2,891,157	+		LRK54_RS12935	0.86	+0.3
2,891,157	+		LRK54_RS12935	0.86	-1.7
2,891,157	+		LRK54_RS12935	0.86	-0.3
2,891,157	+		LRK54_RS12935	0.86	-0.7
2,891,157	+		LRK54_RS12935	0.86	-1.5
2,891,157	+		LRK54_RS12935	0.86	-2.3
2,891,158	-		LRK54_RS12935	0.86	-1.6
2,891,158	-		LRK54_RS12935	0.86	-0.6
2,891,158	-		LRK54_RS12935	0.86	-0.6
2,891,158	-		LRK54_RS12935	0.86	-2.3
2,891,158	-		LRK54_RS12935	0.86	-0.9
2,891,158	-		LRK54_RS12935	0.86	-1.0
2,891,158	-		LRK54_RS12935	0.86	-0.8
2,891,158	-		LRK54_RS12935	0.86	+0.1
2,891,158	-		LRK54_RS12935	0.86	+4.9
2,891,158	-		LRK54_RS12935	0.86	-2.2
2,891,158	-		LRK54_RS12935	0.86	+0.1
2,891,158	-		LRK54_RS12935	0.86	-0.2
2,891,158	-		LRK54_RS12935	0.86	-0.6
2,891,158	-		LRK54_RS12935	0.86	-2.2
2,891,158	-		LRK54_RS12935	0.86	+0.6
2,891,158	-		LRK54_RS12935	0.86	-2.0
2,891,158	-		LRK54_RS12935	0.86	+0.3
2,891,158	-		LRK54_RS12935	0.86	-1.6
2,891,293	+				+0.4
2,891,293	+				-0.4
2,891,293	+				+0.1
2,891,293	+				+1.3
2,891,294	-				+0.1
2,891,294	-				-1.9
2,891,294	-				-0.3
2,891,294	-				-0.8
2,891,294	-				+0.1
2,891,485	+		LRK54_RS12940	0.29	-0.0
2,891,485	+		LRK54_RS12940	0.29	+1.1
2,891,485	+		LRK54_RS12940	0.29	-1.0
2,891,485	+		LRK54_RS12940	0.29	+0.8
2,891,485	+		LRK54_RS12940	0.29	-0.4
2,891,485	+		LRK54_RS12940	0.29	-0.8
2,891,485	+		LRK54_RS12940	0.29	-0.0
2,891,485	+		LRK54_RS12940	0.29	-0.1
2,891,485	+		LRK54_RS12940	0.29	+0.4
2,891,486	-		LRK54_RS12940	0.29	-1.2
2,891,486	-		LRK54_RS12940	0.29	-1.0
2,891,486	-		LRK54_RS12940	0.29	-1.6
2,891,486	-		LRK54_RS12940	0.29	-1.6
2,891,486	-		LRK54_RS12940	0.29	-2.4
2,891,486	-		LRK54_RS12940	0.29	-0.4
2,891,486	-		LRK54_RS12940	0.29	+0.6
2,891,486	-		LRK54_RS12940	0.29	+0.4
2,891,486	-		LRK54_RS12940	0.29	-1.2
2,891,486	-		LRK54_RS12940	0.29	+0.4
2,891,486	-		LRK54_RS12940	0.29	+0.1
2,891,486	-		LRK54_RS12940	0.29	-0.2
2,891,486	-		LRK54_RS12940	0.29	+0.1
2,891,486	-		LRK54_RS12940	0.29	+1.6
2,891,599	+		LRK54_RS12940	0.46	-0.7
2,891,599	+		LRK54_RS12940	0.46	+0.2
2,891,599	+		LRK54_RS12940	0.46	-0.5
2,891,599	+		LRK54_RS12940	0.46	-1.0
2,891,600	-		LRK54_RS12940	0.46	-0.1
2,891,600	-		LRK54_RS12940	0.46	+0.1
2,891,600	-		LRK54_RS12940	0.46	+0.0
2,891,600	-		LRK54_RS12940	0.46	+0.6
2,891,974	+				-0.2
2,891,974	+				+0.1
2,891,974	+				+0.1
2,892,262	+		LRK54_RS12945	0.29	-0.4
2,892,263	-		LRK54_RS12945	0.29	-0.2
2,892,263	-		LRK54_RS12945	0.29	+1.4
2,892,263	-		LRK54_RS12945	0.29	-1.2
2,892,318	+		LRK54_RS12945	0.34	+1.1
2,892,318	+		LRK54_RS12945	0.34	-2.0
2,892,318	+		LRK54_RS12945	0.34	-0.4
2,892,318	+		LRK54_RS12945	0.34	+0.8
2,892,318	+		LRK54_RS12945	0.34	+1.1
2,892,318	+		LRK54_RS12945	0.34	-1.0
2,892,318	+		LRK54_RS12945	0.34	-1.3
2,892,318	+		LRK54_RS12945	0.34	-0.9
2,892,319	-		LRK54_RS12945	0.34	+0.1
2,892,319	-		LRK54_RS12945	0.34	+0.6
2,892,319	-		LRK54_RS12945	0.34	-0.2
2,892,319	-		LRK54_RS12945	0.34	-0.9
2,892,319	-		LRK54_RS12945	0.34	-0.2
2,892,319	-		LRK54_RS12945	0.34	-1.2
2,892,319	-		LRK54_RS12945	0.34	-2.0
2,892,319	-		LRK54_RS12945	0.34	-1.2
2,892,319	-		LRK54_RS12945	0.34	-0.4
2,892,319	-		LRK54_RS12945	0.34	-1.4
2,892,319	-		LRK54_RS12945	0.34	-0.4
2,892,319	-		LRK54_RS12945	0.34	-0.9
2,892,319	-		LRK54_RS12945	0.34	-0.2
2,892,319	-		LRK54_RS12945	0.34	-2.0
2,892,319	-		LRK54_RS12945	0.34	-1.2
2,892,319	-		LRK54_RS12945	0.34	-0.9
2,892,319	-		LRK54_RS12945	0.34	+1.1
2,892,319	-		LRK54_RS12945	0.34	+0.6
2,892,319	-		LRK54_RS12945	0.34	-0.9
2,892,420	+		LRK54_RS12945	0.44	-1.8
2,892,420	+		LRK54_RS12945	0.44	-2.0
2,892,540	+		LRK54_RS12945	0.56	-0.2
2,892,540	+		LRK54_RS12945	0.56	-0.9
2,892,540	+		LRK54_RS12945	0.56	-0.7
2,892,540	+		LRK54_RS12945	0.56	+1.1
2,892,540	+		LRK54_RS12945	0.56	-1.2
2,892,540	+		LRK54_RS12945	0.56	+0.1
2,892,540	+		LRK54_RS12945	0.56	-0.4
2,892,541	-		LRK54_RS12945	0.56	-1.4
2,892,541	-		LRK54_RS12945	0.56	+0.1
2,892,541	-		LRK54_RS12945	0.56	-0.3
2,892,555	+		LRK54_RS12945	0.57	-0.7
2,892,555	+		LRK54_RS12945	0.57	+1.1
2,892,555	+		LRK54_RS12945	0.57	+0.8
2,892,555	+		LRK54_RS12945	0.57	-1.4
2,892,555	+		LRK54_RS12945	0.57	-0.9
2,892,555	+		LRK54_RS12945	0.57	-3.0
2,892,555	+		LRK54_RS12945	0.57	-1.6
2,892,555	+		LRK54_RS12945	0.57	-0.7
2,892,555	+		LRK54_RS12945	0.57	+0.6
2,892,555	+		LRK54_RS12945	0.57	+0.1
2,892,555	+		LRK54_RS12945	0.57	-0.7
2,892,555	+		LRK54_RS12945	0.57	-1.3
2,892,555	+		LRK54_RS12945	0.57	-0.7
2,892,555	+		LRK54_RS12945	0.57	-0.7
2,892,555	+		LRK54_RS12945	0.57	+0.1
2,892,555	+		LRK54_RS12945	0.57	-1.0
2,892,555	+		LRK54_RS12945	0.57	-1.2
2,892,556	-		LRK54_RS12945	0.57	-0.4
2,892,556	-		LRK54_RS12945	0.57	+0.6
2,892,556	-		LRK54_RS12945	0.57	-2.3
2,892,556	-		LRK54_RS12945	0.57	-0.9
2,892,556	-		LRK54_RS12945	0.57	-0.9
2,892,556	-		LRK54_RS12945	0.57	-0.2
2,892,556	-		LRK54_RS12945	0.57	-0.8
2,892,556	-		LRK54_RS12945	0.57	-0.4
2,892,556	-		LRK54_RS12945	0.57	-0.2
2,892,556	-		LRK54_RS12945	0.57	-1.2
2,892,556	-		LRK54_RS12945	0.57	-1.3
2,892,556	-		LRK54_RS12945	0.57	-1.2
2,892,556	-		LRK54_RS12945	0.57	-0.7
2,892,556	-		LRK54_RS12945	0.57	+0.1
2,892,556	-		LRK54_RS12945	0.57	+0.6
2,892,556	-		LRK54_RS12945	0.57	-0.7
2,892,556	-		LRK54_RS12945	0.57	+0.1
2,892,556	-		LRK54_RS12945	0.57	-0.7
2,892,556	-		LRK54_RS12945	0.57	+0.1
2,892,556	-		LRK54_RS12945	0.57	+0.1
2,892,556	-		LRK54_RS12945	0.57	-1.3
2,892,556	-		LRK54_RS12945	0.57	-1.9
2,892,556	-		LRK54_RS12945	0.57	-1.3
2,892,556	-		LRK54_RS12945	0.57	-1.7
2,892,556	-		LRK54_RS12945	0.57	+1.1
2,892,556	-		LRK54_RS12945	0.57	-0.4
2,892,556	-		LRK54_RS12945	0.57	-0.2
2,892,556	-		LRK54_RS12945	0.57	-1.7
2,892,556	-		LRK54_RS12945	0.57	-1.3
2,892,556	-		LRK54_RS12945	0.57	-1.2
2,892,556	-		LRK54_RS12945	0.57	+1.1
2,892,678	+		LRK54_RS12945	0.69	-1.7
2,892,678	+		LRK54_RS12945	0.69	-1.0
2,892,678	+		LRK54_RS12945	0.69	-2.8
2,892,678	+		LRK54_RS12945	0.69	-0.4
2,892,678	+		LRK54_RS12945	0.69	-0.7
2,892,678	+		LRK54_RS12945	0.69	+0.6
2,892,678	+		LRK54_RS12945	0.69	-0.9
2,892,679	-		LRK54_RS12945	0.69	-0.2
2,892,679	-		LRK54_RS12945	0.69	+0.1
2,892,679	-		LRK54_RS12945	0.69	-0.2
2,892,679	-		LRK54_RS12945	0.69	-0.2
2,892,679	-		LRK54_RS12945	0.69	-0.2
2,892,679	-		LRK54_RS12945	0.69	-1.7
2,892,679	-		LRK54_RS12945	0.69	-0.2
2,892,679	-		LRK54_RS12945	0.69	+0.1
2,892,838	-		LRK54_RS12945	0.85	+1.1
2,892,975	+				-1.2
2,892,976	-				+0.6
2,892,976	-				-1.0
2,893,043	+				-1.6
2,893,043	+				-0.4
2,893,043	+				-0.7
2,893,044	-				+0.3
2,893,044	-				+0.1
2,893,044	-				+0.4
2,893,044	-				-2.1
2,893,044	-				+2.3
2,893,152	+				+0.6
2,893,152	+				-0.4
2,893,152	+				+0.5
2,893,152	+				-1.4
2,893,152	+				+0.6
2,893,152	+				+0.8
2,893,152	+				-2.6
2,893,152	+				+0.6
2,893,152	+				-0.3
2,893,152	+				+0.6
2,893,249	+				-0.2
2,893,249	+				-0.9
2,893,249	+				-1.6
2,893,249	+				-3.0
2,893,249	+				-3.4
2,893,249	+				-0.6
2,893,249	+				-2.2
2,893,249	+				-2.1
2,893,627	+		LRK54_RS12950	0.47	-4.0
2,893,627	+		LRK54_RS12950	0.47	+0.1
2,893,627	+		LRK54_RS12950	0.47	-0.9
2,893,627	+		LRK54_RS12950	0.47	-1.3
2,893,627	+		LRK54_RS12950	0.47	-1.0
2,893,627	+		LRK54_RS12950	0.47	-1.4
2,893,627	+		LRK54_RS12950	0.47	-2.0
2,893,627	+		LRK54_RS12950	0.47	-2.4
2,893,705	+		LRK54_RS12950	0.55	-0.3
2,893,705	+		LRK54_RS12950	0.55	-2.9
2,893,705	+		LRK54_RS12950	0.55	-2.3
2,893,936	+		LRK54_RS12950	0.79	-3.7
2,893,936	+		LRK54_RS12950	0.79	-2.0
2,893,936	+		LRK54_RS12950	0.79	-0.7
2,893,936	+		LRK54_RS12950	0.79	+1.1
2,893,936	+		LRK54_RS12950	0.79	-3.4
2,893,936	+		LRK54_RS12950	0.79	-2.6