Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06730

Experiment: a-Cyclodextrin 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Cyclodextrin 20 mM
1,445,901	+		LRK54_RS06720	0.60	-1.3
1,445,901	+		LRK54_RS06720	0.60	-1.6
1,445,901	+		LRK54_RS06720	0.60	-1.4
1,445,901	+		LRK54_RS06720	0.60	+1.0
1,445,901	+		LRK54_RS06720	0.60	-1.4
1,445,901	+		LRK54_RS06720	0.60	-0.3
1,445,901	+		LRK54_RS06720	0.60	-0.5
1,445,901	+		LRK54_RS06720	0.60	+0.3
1,445,901	+		LRK54_RS06720	0.60	-0.4
1,445,901	+		LRK54_RS06720	0.60	-2.5
1,445,901	+		LRK54_RS06720	0.60	-3.3
1,445,901	+		LRK54_RS06720	0.60	-1.6
1,445,901	+		LRK54_RS06720	0.60	-0.6
1,445,902	-		LRK54_RS06720	0.60	-0.5
1,445,902	-		LRK54_RS06720	0.60	-0.4
1,445,902	-		LRK54_RS06720	0.60	-0.5
1,445,902	-		LRK54_RS06720	0.60	-0.8
1,445,902	-		LRK54_RS06720	0.60	+0.7
1,445,961	+		LRK54_RS06720	0.65	-0.7
1,445,962	-		LRK54_RS06720	0.65	-1.0
1,445,962	-		LRK54_RS06720	0.65	-0.3
1,446,130	+		LRK54_RS06720	0.80	-2.8
1,446,130	+		LRK54_RS06720	0.80	-2.1
1,446,131	-		LRK54_RS06720	0.80	-1.4
1,446,131	-		LRK54_RS06720	0.80	-0.0
1,446,131	-		LRK54_RS06720	0.80	-0.5
1,446,447	+				+0.2
1,446,447	+				+0.4
1,446,447	+				+1.5
1,446,447	+				-0.5
1,446,447	+				+0.6
1,446,447	+				+0.0
1,446,447	+				-0.6
1,446,447	+				+0.4
1,446,447	+				+0.7
1,446,447	+				-0.4
1,446,447	+				+0.1
1,446,447	+				+0.1
1,446,447	+				+1.4
1,446,447	+				-0.2
1,446,447	+				+0.3
1,446,447	+				-0.5
1,446,447	+				+0.6
1,446,447	+				+0.4
1,446,447	+				+0.4
1,446,447	+				-0.4
1,446,447	+				+0.7
1,446,447	+				+1.8
1,446,447	+				+0.3
1,446,447	+				+1.2
1,446,447	+				-0.8
1,446,447	+				+0.5
1,446,447	+				-0.2
1,446,447	+				+0.8
1,446,448	-				+1.3
1,446,448	-				-1.5
1,446,448	-				-0.6
1,446,448	-				-0.8
1,446,448	-				-1.2
1,446,448	-				+0.4
1,446,448	-				-0.6
1,446,448	-				+0.5
1,446,448	-				+1.3
1,446,448	-				+2.0
1,446,448	-				-0.1
1,446,448	-				+1.1
1,446,448	-				-2.6
1,446,448	-				-0.3
1,446,448	-				+0.2
1,446,448	-				-1.3
1,446,448	-				-0.8
1,446,448	-				-0.4
1,446,448	-				-0.2
1,446,448	-				-0.4
1,446,448	-				+0.3
1,446,448	-				+2.5
1,446,462	+		LRK54_RS06725	0.15	+1.8
1,446,462	+		LRK54_RS06725	0.15	+1.6
1,446,462	+		LRK54_RS06725	0.15	+0.3
1,446,462	+		LRK54_RS06725	0.15	+0.8
1,446,462	+		LRK54_RS06725	0.15	+5.1
1,446,462	+		LRK54_RS06725	0.15	+0.2
1,446,463	-		LRK54_RS06725	0.15	-0.0
1,446,463	-		LRK54_RS06725	0.15	+0.3
1,446,463	-		LRK54_RS06725	0.15	-0.5
1,446,463	-		LRK54_RS06725	0.15	-0.2
1,446,504	+		LRK54_RS06725	0.35	+1.1
1,446,504	+		LRK54_RS06725	0.35	+0.1
1,446,504	+		LRK54_RS06725	0.35	+0.3
1,446,504	+		LRK54_RS06725	0.35	+0.1
1,446,504	+		LRK54_RS06725	0.35	+0.5
1,446,504	+		LRK54_RS06725	0.35	-1.3
1,446,504	+		LRK54_RS06725	0.35	+0.3
1,446,504	+		LRK54_RS06725	0.35	+1.0
1,446,504	+		LRK54_RS06725	0.35	-0.3
1,446,504	+		LRK54_RS06725	0.35	-0.7
1,446,504	+		LRK54_RS06725	0.35	+0.7
1,446,504	+		LRK54_RS06725	0.35	-0.3
1,446,504	+		LRK54_RS06725	0.35	-0.7
1,446,504	+		LRK54_RS06725	0.35	+0.1
1,446,505	-		LRK54_RS06725	0.35	-0.7
1,446,505	-		LRK54_RS06725	0.35	+1.0
1,446,505	-		LRK54_RS06725	0.35	+0.4
1,446,505	-		LRK54_RS06725	0.35	-0.8
1,446,505	-		LRK54_RS06725	0.35	+0.9
1,446,505	-		LRK54_RS06725	0.35	-0.5
1,446,505	-		LRK54_RS06725	0.35	+0.4
1,446,505	-		LRK54_RS06725	0.35	+0.6
1,446,505	-		LRK54_RS06725	0.35	+0.7
1,446,505	-		LRK54_RS06725	0.35	+1.0
1,446,505	-		LRK54_RS06725	0.35	-0.5
1,446,505	-		LRK54_RS06725	0.35	-0.5
1,446,583	-		LRK54_RS06725	0.72	+0.8
1,446,677	+				+0.3
1,446,677	+				-0.0
1,446,677	+				-0.1
1,446,677	+				-0.4
1,446,677	+				-0.1
1,446,677	+				-1.7
1,446,677	+				-0.7
1,446,677	+				+0.1
1,446,677	+				+0.4
1,446,678	-				-3.3
1,446,678	-				-2.6
1,446,678	-				+0.9
1,446,827	+				-0.3
1,446,827	+				+0.4
1,446,827	+				+2.1
1,446,827	+				+0.3
1,446,827	+				-1.6
1,446,827	+				-0.0
1,446,827	+				+0.1
1,446,827	+				-1.2
1,446,827	+				-2.4
1,446,827	+				-0.8
1,446,827	+				-0.3
1,446,827	+				-1.7
1,446,827	+				+1.4
1,446,827	+				-0.6
1,446,827	+				-0.7
1,446,827	+				-0.7
1,446,827	+				+0.8
1,446,827	+				-1.6
1,446,827	+				+0.1
1,446,827	+				+1.5
1,446,828	-				+0.9
1,446,828	-				+0.4
1,446,828	-				+0.1
1,446,828	-				-1.0
1,446,828	-				+0.6
1,446,828	-				-0.0
1,446,828	-				-0.3
1,446,828	-				+0.7
1,446,828	-				-0.6
1,446,828	-				-0.5
1,446,828	-				-0.4
1,446,828	-				-0.0
1,446,828	-				+2.0
1,446,828	-				+0.7
1,446,828	-				+0.7
1,446,828	-				+1.9
1,446,828	-				-0.4
1,446,828	-				-0.7
1,446,828	-				+0.3
1,446,828	-				+0.4
1,446,828	-				+0.3
1,446,828	-				+0.3
1,446,865	+				-0.5
1,446,865	+				-0.7
1,446,865	+				-1.0
1,446,865	+				+0.3
1,446,865	+				-0.5
1,446,865	+				-0.9
1,446,865	+				-1.2
1,446,865	+				-0.7
1,446,865	+				-0.9
1,446,865	+				+0.4
1,446,865	+				-2.1
1,446,865	+				+0.9
1,446,865	+				-0.7
1,446,866	-				-1.4
1,446,866	-				-1.2
1,446,866	-				+0.3
1,446,866	-				-0.4
1,446,866	-				-0.8
1,446,866	-				+3.7
1,446,866	-				-1.0
1,446,866	-				+0.5
1,446,866	-				-0.1
1,446,866	-				+1.5
1,446,866	-				-1.5
1,446,941	+				-1.6
1,446,941	+				-0.5
1,446,941	+				-2.6
1,446,941	+				+0.6
1,446,941	+				-0.7
1,446,941	+				-0.6
1,446,941	+				-0.0
1,446,941	+				-0.7
1,446,942	-				-0.6
1,446,942	-				-0.2
1,446,942	-				+2.3
1,446,942	-				+0.6
1,446,950	+				+1.3
1,446,950	+				-0.3
1,446,950	+				-0.1
1,446,950	+				-0.1
1,446,950	+				+0.4
1,446,950	+				-0.9
1,446,950	+				+0.5
1,446,950	+				+0.3
1,446,951	-				+0.7
1,446,951	-				-0.8
1,446,951	-				+0.3
1,446,951	-				+1.2
1,446,951	-				-1.7
1,446,951	-				-0.5
1,446,951	-				-0.3
1,447,079	+		LRK54_RS06730	0.19	-0.6
1,447,079	+		LRK54_RS06730	0.19	+1.0
1,447,079	+		LRK54_RS06730	0.19	+0.5
1,447,079	+		LRK54_RS06730	0.19	+0.3
1,447,079	+		LRK54_RS06730	0.19	+1.3
1,447,079	+		LRK54_RS06730	0.19	+1.3
1,447,079	+		LRK54_RS06730	0.19	-1.8
1,447,079	+		LRK54_RS06730	0.19	-0.0
1,447,079	+		LRK54_RS06730	0.19	+0.2
1,447,079	+		LRK54_RS06730	0.19	+0.7
1,447,079	+		LRK54_RS06730	0.19	+0.7
1,447,079	+		LRK54_RS06730	0.19	+0.4
1,447,079	+		LRK54_RS06730	0.19	-1.0
1,447,079	+		LRK54_RS06730	0.19	-1.3
1,447,079	+		LRK54_RS06730	0.19	+0.7
1,447,079	+		LRK54_RS06730	0.19	-3.0
1,447,079	+		LRK54_RS06730	0.19	+0.9
1,447,079	+		LRK54_RS06730	0.19	+0.5
1,447,079	+		LRK54_RS06730	0.19	-1.3
1,447,079	+		LRK54_RS06730	0.19	-0.2
1,447,080	-		LRK54_RS06730	0.19	-0.1
1,447,080	-		LRK54_RS06730	0.19	-0.0
1,447,080	-		LRK54_RS06730	0.19	+0.3
1,447,080	-		LRK54_RS06730	0.19	-0.3
1,447,080	-		LRK54_RS06730	0.19	+0.7
1,447,080	-		LRK54_RS06730	0.19	-1.2
1,447,080	-		LRK54_RS06730	0.19	-1.5
1,447,080	-		LRK54_RS06730	0.19	-0.5
1,447,103	+		LRK54_RS06730	0.21	-0.3
1,447,103	+		LRK54_RS06730	0.21	-0.9
1,447,103	+		LRK54_RS06730	0.21	-0.5
1,447,103	+		LRK54_RS06730	0.21	+0.5
1,447,103	+		LRK54_RS06730	0.21	-0.1
1,447,103	+		LRK54_RS06730	0.21	-0.3
1,447,103	+		LRK54_RS06730	0.21	+0.5
1,447,103	+		LRK54_RS06730	0.21	-0.8
1,447,103	+		LRK54_RS06730	0.21	-0.7
1,447,103	+		LRK54_RS06730	0.21	+0.9
1,447,103	+		LRK54_RS06730	0.21	-0.8
1,447,103	+		LRK54_RS06730	0.21	-0.4
1,447,103	+		LRK54_RS06730	0.21	+2.0
1,447,103	+		LRK54_RS06730	0.21	-0.0
1,447,103	+		LRK54_RS06730	0.21	+0.7
1,447,103	+		LRK54_RS06730	0.21	-1.3
1,447,103	+		LRK54_RS06730	0.21	+0.1
1,447,104	-		LRK54_RS06730	0.21	-0.5
1,447,104	-		LRK54_RS06730	0.21	-0.0
1,447,104	-		LRK54_RS06730	0.21	-1.0
1,447,104	-		LRK54_RS06730	0.21	+0.6
1,447,104	-		LRK54_RS06730	0.21	-0.5
1,447,104	-		LRK54_RS06730	0.21	-0.0
1,447,104	-		LRK54_RS06730	0.21	-0.0
1,447,104	-		LRK54_RS06730	0.21	+0.0
1,447,104	-		LRK54_RS06730	0.21	+0.1
1,447,104	-		LRK54_RS06730	0.21	-1.5
1,447,104	-		LRK54_RS06730	0.21	-1.1
1,447,104	-		LRK54_RS06730	0.21	-0.6
1,447,104	-		LRK54_RS06730	0.21	+0.7
1,447,104	-		LRK54_RS06730	0.21	+0.4
1,447,104	-		LRK54_RS06730	0.21	-0.3
1,447,104	-		LRK54_RS06730	0.21	+0.2
1,447,187	+		LRK54_RS06730	0.27	+2.1
1,447,187	+		LRK54_RS06730	0.27	+0.0
1,447,188	-		LRK54_RS06730	0.28	-0.9
1,447,188	-		LRK54_RS06730	0.28	+0.1
1,447,188	-		LRK54_RS06730	0.28	-0.5
1,447,188	-		LRK54_RS06730	0.28	-1.2
1,447,188	-		LRK54_RS06730	0.28	+2.3
1,447,188	-		LRK54_RS06730	0.28	-0.5
1,447,188	-		LRK54_RS06730	0.28	-0.7
1,447,271	+		LRK54_RS06730	0.34	-0.0
1,447,271	+		LRK54_RS06730	0.34	-0.0
1,447,271	+		LRK54_RS06730	0.34	-1.2
1,447,271	+		LRK54_RS06730	0.34	-0.4
1,447,271	+		LRK54_RS06730	0.34	-0.8
1,447,271	+		LRK54_RS06730	0.34	-0.7
1,447,271	+		LRK54_RS06730	0.34	+1.0
1,447,271	+		LRK54_RS06730	0.34	+1.3
1,447,271	+		LRK54_RS06730	0.34	+0.5
1,447,271	+		LRK54_RS06730	0.34	+0.1
1,447,271	+		LRK54_RS06730	0.34	-0.2
1,447,271	+		LRK54_RS06730	0.34	-0.6
1,447,271	+		LRK54_RS06730	0.34	-0.5
1,447,271	+		LRK54_RS06730	0.34	+0.0
1,447,272	-		LRK54_RS06730	0.34	-0.0
1,447,272	-		LRK54_RS06730	0.34	-0.5
1,447,272	-		LRK54_RS06730	0.34	+0.1
1,447,272	-		LRK54_RS06730	0.34	-2.2
1,447,272	-		LRK54_RS06730	0.34	-0.2
1,447,272	-		LRK54_RS06730	0.34	-0.0
1,447,272	-		LRK54_RS06730	0.34	-0.5
1,447,272	-		LRK54_RS06730	0.34	-0.5
1,447,272	-		LRK54_RS06730	0.34	-0.0
1,447,272	-		LRK54_RS06730	0.34	+0.9
1,447,272	-		LRK54_RS06730	0.34	+0.5
1,447,272	-		LRK54_RS06730	0.34	-0.2
1,447,280	+		LRK54_RS06730	0.35	-1.9
1,447,280	+		LRK54_RS06730	0.35	+0.3
1,447,280	+		LRK54_RS06730	0.35	+0.5
1,447,280	+		LRK54_RS06730	0.35	+0.4
1,447,280	+		LRK54_RS06730	0.35	+0.3
1,447,280	+		LRK54_RS06730	0.35	-0.7
1,447,280	+		LRK54_RS06730	0.35	-1.1
1,447,280	+		LRK54_RS06730	0.35	-1.9
1,447,280	+		LRK54_RS06730	0.35	-0.2
1,447,280	+		LRK54_RS06730	0.35	-1.0
1,447,280	+		LRK54_RS06730	0.35	-1.0
1,447,280	+		LRK54_RS06730	0.35	-0.4
1,447,280	+		LRK54_RS06730	0.35	+1.3
1,447,280	+		LRK54_RS06730	0.35	-0.3
1,447,280	+		LRK54_RS06730	0.35	-0.1
1,447,280	+		LRK54_RS06730	0.35	+0.1
1,447,280	+		LRK54_RS06730	0.35	-0.5
1,447,280	+		LRK54_RS06730	0.35	+0.7
1,447,280	+		LRK54_RS06730	0.35	-1.4
1,447,280	+		LRK54_RS06730	0.35	+0.5
1,447,280	+		LRK54_RS06730	0.35	+1.9
1,447,280	+		LRK54_RS06730	0.35	+1.1
1,447,280	+		LRK54_RS06730	0.35	-0.4
1,447,280	+		LRK54_RS06730	0.35	+0.0
1,447,280	+		LRK54_RS06730	0.35	+0.2
1,447,280	+		LRK54_RS06730	0.35	+1.7
1,447,280	+		LRK54_RS06730	0.35	+1.3
1,447,280	+		LRK54_RS06730	0.35	-0.1
1,447,280	+		LRK54_RS06730	0.35	-0.0
1,447,280	+		LRK54_RS06730	0.35	+1.1
1,447,280	+		LRK54_RS06730	0.35	-0.1
1,447,280	+		LRK54_RS06730	0.35	+0.4
1,447,280	+		LRK54_RS06730	0.35	-0.4
1,447,280	+		LRK54_RS06730	0.35	-0.5
1,447,280	+		LRK54_RS06730	0.35	-0.4
1,447,281	-		LRK54_RS06730	0.35	-0.9
1,447,281	-		LRK54_RS06730	0.35	+0.0
1,447,281	-		LRK54_RS06730	0.35	+4.5
1,447,281	-		LRK54_RS06730	0.35	+0.3
1,447,281	-		LRK54_RS06730	0.35	-0.9
1,447,281	-		LRK54_RS06730	0.35	-1.2
1,447,281	-		LRK54_RS06730	0.35	+2.3
1,447,281	-		LRK54_RS06730	0.35	-0.9
1,447,281	-		LRK54_RS06730	0.35	-1.0
1,447,281	-		LRK54_RS06730	0.35	+0.4
1,447,281	-		LRK54_RS06730	0.35	+1.0
1,447,281	-		LRK54_RS06730	0.35	-1.0
1,447,281	-		LRK54_RS06730	0.35	+0.5
1,447,281	-		LRK54_RS06730	0.35	+0.4
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