Experiment: a-Cyclodextrin 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS02390 and LRK54_RS02395 are separated by 17 nucleotides LRK54_RS02395 and LRK54_RS02400 overlap by 4 nucleotides
LRK54_RS02390: LRK54_RS02390 - acetylglutamate kinase, at 519,369 to 520,688
_RS02390
LRK54_RS02395: LRK54_RS02395 - acetylornithine deacetylase, at 520,706 to 521,839
_RS02395
LRK54_RS02400: LRK54_RS02400 - argininosuccinate synthase, at 521,836 to 523,029
_RS02400
Position (kb) 520
521
522 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 519.718 kb on + strand, within LRK54_RS02390 at 519.719 kb on - strand, within LRK54_RS02390 at 519.719 kb on - strand, within LRK54_RS02390 at 519.998 kb on + strand, within LRK54_RS02390 at 520.075 kb on + strand, within LRK54_RS02390 at 520.075 kb on + strand, within LRK54_RS02390 at 520.075 kb on + strand, within LRK54_RS02390 at 520.075 kb on + strand, within LRK54_RS02390 at 520.075 kb on + strand, within LRK54_RS02390 at 520.075 kb on + strand, within LRK54_RS02390 at 520.075 kb on + strand, within LRK54_RS02390 at 520.076 kb on - strand, within LRK54_RS02390 at 520.076 kb on - strand, within LRK54_RS02390 at 520.076 kb on - strand, within LRK54_RS02390 at 520.076 kb on - strand, within LRK54_RS02390 at 520.076 kb on - strand, within LRK54_RS02390 at 520.076 kb on - strand, within LRK54_RS02390 at 520.076 kb on - strand, within LRK54_RS02390 at 520.076 kb on - strand, within LRK54_RS02390 at 520.261 kb on + strand, within LRK54_RS02390 at 520.261 kb on + strand, within LRK54_RS02390 at 520.262 kb on - strand, within LRK54_RS02390 at 520.262 kb on - strand, within LRK54_RS02390 at 520.262 kb on - strand, within LRK54_RS02390 at 520.262 kb on - strand, within LRK54_RS02390 at 520.262 kb on - strand, within LRK54_RS02390 at 520.262 kb on - strand, within LRK54_RS02390 at 520.368 kb on - strand, within LRK54_RS02390 at 520.606 kb on + strand at 520.606 kb on + strand at 520.606 kb on + strand at 520.606 kb on + strand at 520.606 kb on + strand at 520.606 kb on + strand at 520.606 kb on + strand at 520.607 kb on - strand at 520.607 kb on - strand at 520.676 kb on + strand at 520.677 kb on - strand at 520.782 kb on + strand at 520.782 kb on + strand at 520.782 kb on + strand at 520.782 kb on + strand at 520.782 kb on + strand at 520.783 kb on - strand at 520.783 kb on - strand at 520.783 kb on - strand at 520.783 kb on - strand at 520.851 kb on + strand, within LRK54_RS02395 at 520.851 kb on + strand, within LRK54_RS02395 at 520.852 kb on - strand, within LRK54_RS02395 at 520.852 kb on - strand, within LRK54_RS02395 at 520.866 kb on + strand, within LRK54_RS02395 at 521.400 kb on + strand, within LRK54_RS02395 at 521.400 kb on + strand, within LRK54_RS02395 at 521.400 kb on + strand, within LRK54_RS02395 at 521.401 kb on - strand, within LRK54_RS02395 at 521.401 kb on - strand, within LRK54_RS02395 at 521.401 kb on - strand, within LRK54_RS02395 at 521.736 kb on + strand at 521.736 kb on + strand at 521.737 kb on - strand at 521.737 kb on - strand at 521.933 kb on + strand at 521.933 kb on + strand at 521.933 kb on + strand at 521.933 kb on + strand at 521.933 kb on + strand at 521.933 kb on + strand at 521.933 kb on + strand at 521.934 kb on - strand at 521.934 kb on - strand at 521.934 kb on - strand at 521.934 kb on - strand at 522.095 kb on + strand, within LRK54_RS02400 at 522.096 kb on - strand, within LRK54_RS02400 at 522.096 kb on - strand, within LRK54_RS02400 at 522.096 kb on - strand, within LRK54_RS02400 at 522.258 kb on - strand, within LRK54_RS02400 at 522.258 kb on - strand, within LRK54_RS02400 at 522.278 kb on + strand, within LRK54_RS02400 at 522.278 kb on + strand, within LRK54_RS02400 at 522.278 kb on + strand, within LRK54_RS02400 at 522.279 kb on - strand, within LRK54_RS02400 at 522.315 kb on + strand, within LRK54_RS02400 at 522.315 kb on + strand, within LRK54_RS02400 at 522.315 kb on + strand, within LRK54_RS02400 at 522.315 kb on + strand, within LRK54_RS02400 at 522.316 kb on - strand, within LRK54_RS02400 at 522.316 kb on - strand, within LRK54_RS02400 at 522.316 kb on - strand, within LRK54_RS02400 at 522.316 kb on - strand, within LRK54_RS02400 at 522.316 kb on - strand, within LRK54_RS02400 at 522.316 kb on - strand, within LRK54_RS02400 at 522.506 kb on + strand, within LRK54_RS02400 at 522.506 kb on + strand, within LRK54_RS02400 at 522.506 kb on + strand, within LRK54_RS02400 at 522.506 kb on + strand, within LRK54_RS02400 at 522.506 kb on + strand, within LRK54_RS02400 at 522.506 kb on + strand, within LRK54_RS02400 at 522.506 kb on + strand, within LRK54_RS02400 at 522.507 kb on - strand, within LRK54_RS02400 at 522.507 kb on - strand, within LRK54_RS02400 at 522.507 kb on - strand, within LRK54_RS02400 at 522.507 kb on - strand, within LRK54_RS02400 at 522.507 kb on - strand, within LRK54_RS02400 at 522.507 kb on - strand, within LRK54_RS02400 at 522.507 kb on - strand, within LRK54_RS02400 at 522.507 kb on - strand, within LRK54_RS02400 at 522.563 kb on + strand, within LRK54_RS02400 at 522.621 kb on - strand, within LRK54_RS02400 at 522.746 kb on + strand, within LRK54_RS02400 at 522.747 kb on - strand, within LRK54_RS02400 at 522.783 kb on - strand, within LRK54_RS02400
Per-strain Table
Position Strand Gene LocusTag Fraction a-Cyclodextrin 20 mM remove 519,718 + LRK54_RS02390 0.26 -0.1 519,719 - LRK54_RS02390 0.27 -2.0 519,719 - LRK54_RS02390 0.27 -1.3 519,998 + LRK54_RS02390 0.48 -1.6 520,075 + LRK54_RS02390 0.53 -0.8 520,075 + LRK54_RS02390 0.53 -1.6 520,075 + LRK54_RS02390 0.53 -0.4 520,075 + LRK54_RS02390 0.53 -1.0 520,075 + LRK54_RS02390 0.53 -2.5 520,075 + LRK54_RS02390 0.53 -2.1 520,075 + LRK54_RS02390 0.53 -2.3 520,076 - LRK54_RS02390 0.54 +0.2 520,076 - LRK54_RS02390 0.54 -3.8 520,076 - LRK54_RS02390 0.54 -0.6 520,076 - LRK54_RS02390 0.54 +0.6 520,076 - LRK54_RS02390 0.54 -0.1 520,076 - LRK54_RS02390 0.54 +0.2 520,076 - LRK54_RS02390 0.54 -0.1 520,076 - LRK54_RS02390 0.54 -0.8 520,261 + LRK54_RS02390 0.68 -1.0 520,261 + LRK54_RS02390 0.68 -1.1 520,262 - LRK54_RS02390 0.68 -1.8 520,262 - LRK54_RS02390 0.68 -1.0 520,262 - LRK54_RS02390 0.68 +0.2 520,262 - LRK54_RS02390 0.68 -1.6 520,262 - LRK54_RS02390 0.68 -1.6 520,262 - LRK54_RS02390 0.68 -3.3 520,368 - LRK54_RS02390 0.76 -3.3 520,606 + -0.6 520,606 + +0.0 520,606 + -2.3 520,606 + -0.6 520,606 + -1.7 520,606 + -0.1 520,606 + +2.2 520,607 - -1.7 520,607 - -2.5 520,676 + -1.8 520,677 - -2.2 520,782 + -1.0 520,782 + -0.8 520,782 + +0.4 520,782 + -2.6 520,782 + -2.7 520,783 - +0.6 520,783 - -0.1 520,783 - -3.6 520,783 - -1.6 520,851 + LRK54_RS02395 0.13 -0.6 520,851 + LRK54_RS02395 0.13 -2.0 520,852 - LRK54_RS02395 0.13 +0.0 520,852 - LRK54_RS02395 0.13 -1.4 520,866 + LRK54_RS02395 0.14 -1.7 521,400 + LRK54_RS02395 0.61 -0.4 521,400 + LRK54_RS02395 0.61 -3.3 521,400 + LRK54_RS02395 0.61 -3.4 521,401 - LRK54_RS02395 0.61 +0.2 521,401 - LRK54_RS02395 0.61 -1.1 521,401 - LRK54_RS02395 0.61 -0.0 521,736 + -2.3 521,736 + -2.1 521,737 - -1.7 521,737 - -0.3 521,933 + -2.4 521,933 + -2.4 521,933 + +1.2 521,933 + -2.9 521,933 + -0.3 521,933 + -2.7 521,933 + -0.8 521,934 - -0.8 521,934 - -1.7 521,934 - -0.4 521,934 - -0.4 522,095 + LRK54_RS02400 0.22 -1.4 522,096 - LRK54_RS02400 0.22 -0.6 522,096 - LRK54_RS02400 0.22 -2.3 522,096 - LRK54_RS02400 0.22 -1.3 522,258 - LRK54_RS02400 0.35 +1.4 522,258 - LRK54_RS02400 0.35 +0.2 522,278 + LRK54_RS02400 0.37 -2.9 522,278 + LRK54_RS02400 0.37 -1.7 522,278 + LRK54_RS02400 0.37 -0.8 522,279 - LRK54_RS02400 0.37 -2.1 522,315 + LRK54_RS02400 0.40 -0.6 522,315 + LRK54_RS02400 0.40 -1.5 522,315 + LRK54_RS02400 0.40 -1.5 522,315 + LRK54_RS02400 0.40 +1.6 522,316 - LRK54_RS02400 0.40 -3.0 522,316 - LRK54_RS02400 0.40 -1.3 522,316 - LRK54_RS02400 0.40 +0.2 522,316 - LRK54_RS02400 0.40 +1.2 522,316 - LRK54_RS02400 0.40 -2.5 522,316 - LRK54_RS02400 0.40 -3.3 522,506 + LRK54_RS02400 0.56 -0.1 522,506 + LRK54_RS02400 0.56 -2.7 522,506 + LRK54_RS02400 0.56 +0.6 522,506 + LRK54_RS02400 0.56 -1.4 522,506 + LRK54_RS02400 0.56 -0.9 522,506 + LRK54_RS02400 0.56 -2.0 522,506 + LRK54_RS02400 0.56 -2.7 522,507 - LRK54_RS02400 0.56 -0.4 522,507 - LRK54_RS02400 0.56 -2.8 522,507 - LRK54_RS02400 0.56 +0.2 522,507 - LRK54_RS02400 0.56 -0.1 522,507 - LRK54_RS02400 0.56 +0.8 522,507 - LRK54_RS02400 0.56 -0.8 522,507 - LRK54_RS02400 0.56 -1.4 522,507 - LRK54_RS02400 0.56 -1.0 522,563 + LRK54_RS02400 0.61 -1.5 522,621 - LRK54_RS02400 0.66 +0.2 522,746 + LRK54_RS02400 0.76 -2.1 522,747 - LRK54_RS02400 0.76 -2.2 522,783 - LRK54_RS02400 0.79 -0.8
Or see this region's nucleotide sequence