Strain Fitness in Pantoea sp. MT58 around IAI47_21830

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
115,558	-		IAI47_21825	0.64	+2.5
115,558	-		IAI47_21825	0.64	+1.6
115,605	+		IAI47_21825	0.67	+1.0
115,605	+		IAI47_21825	0.67	+0.6
115,605	+		IAI47_21825	0.67	-1.4
115,605	+		IAI47_21825	0.67	+1.1
115,606	-		IAI47_21825	0.67	+0.9
115,606	-		IAI47_21825	0.67	+1.2
115,606	-		IAI47_21825	0.67	-1.8
115,619	+		IAI47_21825	0.67	+0.8
115,619	+		IAI47_21825	0.67	+3.5
115,619	+		IAI47_21825	0.67	-1.2
115,619	+		IAI47_21825	0.67	-0.6
115,619	+		IAI47_21825	0.67	-1.0
115,619	+		IAI47_21825	0.67	+0.8
115,619	+		IAI47_21825	0.67	-0.2
115,619	+		IAI47_21825	0.67	-1.4
115,619	+		IAI47_21825	0.67	-1.3
115,619	+		IAI47_21825	0.67	+0.0
115,619	+		IAI47_21825	0.67	-0.6
115,619	+		IAI47_21825	0.67	-0.1
115,619	+		IAI47_21825	0.67	-0.6
115,619	+		IAI47_21825	0.67	+0.0
115,619	+		IAI47_21825	0.67	+0.6
115,619	+		IAI47_21825	0.67	-0.4
115,619	+		IAI47_21825	0.67	+2.9
115,619	+		IAI47_21825	0.67	+1.4
115,619	+		IAI47_21825	0.67	+0.4
115,619	+		IAI47_21825	0.67	+1.8
115,619	+		IAI47_21825	0.67	-0.5
115,619	+		IAI47_21825	0.67	+0.8
115,619	+		IAI47_21825	0.67	-1.2
115,619	+		IAI47_21825	0.67	+0.7
115,619	+		IAI47_21825	0.67	-0.3
115,619	+		IAI47_21825	0.67	-0.6
115,619	+		IAI47_21825	0.67	+1.2
115,619	+		IAI47_21825	0.67	-0.9
115,619	+		IAI47_21825	0.67	+0.1
115,619	+		IAI47_21825	0.67	-0.6
115,620	-		IAI47_21825	0.67	+1.2
115,620	-		IAI47_21825	0.67	-0.2
115,620	-		IAI47_21825	0.67	-1.8
115,620	-		IAI47_21825	0.67	+0.2
115,620	-		IAI47_21825	0.67	-0.4
115,620	-		IAI47_21825	0.67	+0.4
115,620	-		IAI47_21825	0.67	+0.9
115,620	-		IAI47_21825	0.67	+0.7
115,620	-				-0.2
115,620	-		IAI47_21825	0.67	+1.1
115,620	-		IAI47_21825	0.67	-0.8
115,620	-		IAI47_21825	0.67	-0.2
115,620	-		IAI47_21825	0.67	-0.5
115,620	-		IAI47_21825	0.67	-0.1
115,620	-		IAI47_21825	0.67	-0.3
115,620	-		IAI47_21825	0.67	-0.9
115,620	-		IAI47_21825	0.67	-0.5
115,620	-		IAI47_21825	0.67	+2.4
115,620	-		IAI47_21825	0.67	+1.2
115,620	-		IAI47_21825	0.67	+1.1
115,620	-		IAI47_21825	0.67	+1.4
115,620	-		IAI47_21825	0.67	+1.9
115,623	+		IAI47_21825	0.68	+0.4
115,623	+		IAI47_21825	0.68	-0.2
115,623	+				+1.4
115,624	-		IAI47_21825	0.68	-0.3
115,624	-		IAI47_21825	0.68	-1.1
115,677	+		IAI47_21825	0.71	+0.4
115,677	+		IAI47_21825	0.71	-1.2
115,677	+		IAI47_21825	0.71	+1.8
115,677	+		IAI47_21825	0.71	-0.5
115,677	+		IAI47_21825	0.71	+0.8
115,677	+		IAI47_21825	0.71	+1.0
115,677	+		IAI47_21825	0.71	+0.1
115,677	+		IAI47_21825	0.71	+0.5
115,677	+		IAI47_21825	0.71	-2.7
115,678	-		IAI47_21825	0.71	-1.2
115,678	-		IAI47_21825	0.71	+0.6
115,678	-		IAI47_21825	0.71	-0.0
115,678	-		IAI47_21825	0.71	+1.5
115,678	-		IAI47_21825	0.71	+0.8
115,678	-		IAI47_21825	0.71	+2.9
115,678	-		IAI47_21825	0.71	+1.8
115,678	-		IAI47_21825	0.71	-0.2
115,678	-		IAI47_21825	0.71	+1.1
115,678	-		IAI47_21825	0.71	+0.0
115,678	-		IAI47_21825	0.71	-1.8
115,678	-		IAI47_21825	0.71	+0.4
115,678	-		IAI47_21825	0.71	-0.5
115,678	-		IAI47_21825	0.71	-2.4
115,678	-		IAI47_21825	0.71	-0.4
115,696	+		IAI47_21825	0.72	+1.0
115,696	+		IAI47_21825	0.72	+1.2
115,697	-		IAI47_21825	0.72	-0.3
115,697	-		IAI47_21825	0.72	+2.4
115,711	+		IAI47_21825	0.73	+0.7
115,712	-		IAI47_21825	0.73	+2.8
115,732	+		IAI47_21825	0.75	-0.2
115,732	+		IAI47_21825	0.75	-0.3
115,732	+		IAI47_21825	0.75	-0.5
115,733	-		IAI47_21825	0.75	-1.4
115,733	-		IAI47_21825	0.75	-1.1
115,763	-		IAI47_21825	0.77	+1.0
115,820	-		IAI47_21825	0.80	+0.3
115,859	+		IAI47_21825	0.83	+0.2
115,859	+		IAI47_21825	0.83	+0.8
115,859	+		IAI47_21825	0.83	+2.6
115,859	+		IAI47_21825	0.83	+0.3
115,859	+		IAI47_21825	0.83	+0.6
115,860	-		IAI47_21825	0.83	+2.7
115,860	-		IAI47_21825	0.83	+0.1
115,860	-		IAI47_21825	0.83	+0.9
115,953	+		IAI47_21825	0.89	+0.5
115,953	+		IAI47_21825	0.89	-1.0
115,954	-		IAI47_21825	0.89	-2.2
115,954	-		IAI47_21825	0.89	-2.5
115,966	+		IAI47_21825	0.89	-2.1
115,986	+				+0.2
115,986	+				+0.8
115,986	+				+0.6
115,986	+				-2.0
115,987	-				+0.8
116,042	+				-0.3
116,042	+				+0.6
116,043	-				+0.4
116,135	+				-1.0
116,135	+				+0.5
116,135	+				-1.2
116,135	+				+0.8
116,136	-				-0.1
116,153	+				-0.1
116,153	+				+1.7
116,154	-				+1.1
116,154	-				+0.6
116,154	-				-0.2
116,170	+				+0.1
116,170	+				+1.1
116,170	+				-2.4
116,170	+				+1.8
116,171	-				-0.5
116,171	-				-0.3
116,183	+				-0.2
116,184	-				+0.2
116,208	-				+1.8
116,212	+				+1.1
116,212	+				-0.0
116,212	+				-0.2
116,230	+				-0.2
116,230	+				+1.2
116,231	-				-1.4
116,231	-				+0.7
116,231	-				+0.8
116,231	-				-1.0
116,260	+				-0.1
116,260	+				-1.0
116,260	+				+1.6
116,260	+				+0.7
116,261	-				+2.1
116,264	-				-1.1
116,264	-				+0.4
116,293	+				-2.2
116,293	+				-0.6
116,299	-				-0.4
116,299	-				-2.3
116,326	+				-0.4
116,329	+				-2.2
116,329	+				-0.6
116,330	-				+1.8
116,330	-				+1.4
116,335	+				+0.1
116,336	-				+1.8
116,342	+				+1.0
116,370	-				-1.2
116,393	+				-1.4
116,548	+				+1.1
116,552	-		IAI47_21830	0.10	-1.7
116,552	-		IAI47_21830	0.10	+1.8
116,678	-		IAI47_21830	0.70	-0.2
116,695	-		IAI47_21830	0.78	-0.2
116,724	-				-1.6
116,724	-				-1.8
116,724	-				-3.4
116,731	+				-2.0
116,742	+				-1.6
116,743	-				+1.0
116,743	-				-0.2
116,758	-				+0.8
116,926	+				-1.2
116,945	+				-1.2
116,952	-				-0.0
116,953	+				+0.0
116,954	-				-1.4
116,954	-				+0.2
116,957	+				-0.1
116,958	-				-1.8
116,958	-				+0.4
116,958	-				-1.4
116,958	-				-2.0
116,991	-				+0.4
116,991	-				+3.5
116,991	-				-1.1
117,063	+				-0.8
117,063	+				+0.0
117,064	-				+1.0
117,064	-				-0.8
117,108	+				-1.6
117,108	+				+0.7
117,126	+				-0.8
117,126	+				-2.2
117,126	+				-0.7
117,127	-				-2.5
117,127	-				+0.8
117,164	+				+0.2
117,164	+				+1.6
117,208	+				+1.1
117,218	+				+0.3
117,219	-				+0.9
117,219	-				+0.2
117,219	-				-2.1
117,228	+				+0.6
117,228	+				+2.5
117,228	+				-0.8
117,228	+				-0.0
117,228	+				+1.4
117,229	-				-0.5
117,229	-				-0.4
117,230	+				-1.8
117,230	+				+1.6
117,230	+				+0.4
117,230	+				-0.2
117,230	+				+0.0
117,230	+				+2.7
117,230	+				+1.4
117,230	+				-0.6
117,230	+				+0.4
117,230	+				-1.6
117,231	-				-3.0
117,231	-				-2.2
117,231	-				-0.5
117,231	-				+1.1
117,231	-				+1.0
117,231	-				+1.9
117,231	-				+1.4
117,231	-				-0.9
117,231	-				+1.2
117,231	-				-0.6
117,231	-				+0.4
117,231	-				-1.3
117,231	-				-1.3
117,243	+				+2.2
117,243	+				+1.1
117,405	-		IAI47_21835	0.20	+0.4
117,417	+		IAI47_21835	0.22	+1.2
117,436	-		IAI47_21835	0.24	-3.5
117,436	-		IAI47_21835	0.24	+1.1
117,436	-		IAI47_21835	0.24	-0.6
117,464	+		IAI47_21835	0.27	+0.8
117,498	+		IAI47_21835	0.31	+0.0
117,499	-		IAI47_21835	0.31	+0.4
117,515	+		IAI47_21835	0.32	+2.9
117,515	+		IAI47_21835	0.32	+0.1
117,516	-		IAI47_21835	0.33	-1.8
117,516	-		IAI47_21835	0.33	-3.2
117,516	-		IAI47_21835	0.33	-1.6
117,520	+		IAI47_21835	0.33	-1.0
117,521	-		IAI47_21835	0.33	+0.8
117,521	-		IAI47_21835	0.33	-2.0
117,607	+		IAI47_21835	0.43	+2.9
117,607	+		IAI47_21835	0.43	-1.0
117,608	-		IAI47_21835	0.43	+0.1
117,608	-		IAI47_21835	0.43	+1.4
117,608	-		IAI47_21835	0.43	-0.1
117,633	-		IAI47_21835	0.45	+0.0
117,707	+		IAI47_21835	0.54	+1.5
117,708	-		IAI47_21835	0.54	+0.4
117,708	-		IAI47_21835	0.54	+0.1
117,708	-		IAI47_21835	0.54	-0.2
117,717	+		IAI47_21835	0.55	-2.1
117,718	-		IAI47_21835	0.55	+0.7
117,718	-		IAI47_21835	0.55	+1.0