Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19940 and IAI47_19945 are separated by 182 nucleotides
IAI47_19940: IAI47_19940 - hypothetical protein, at 215,339 to 215,608
_19940
IAI47_19945: IAI47_19945 - hypothetical protein, at 215,791 to 216,021
_19945
Position (kb) 215
216
217 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 214.822 kb on + strand at 214.856 kb on - strand at 214.879 kb on + strand at 214.884 kb on - strand at 214.992 kb on - strand at 214.999 kb on - strand at 215.036 kb on + strand at 215.055 kb on - strand at 215.055 kb on - strand at 215.055 kb on - strand at 215.055 kb on - strand at 215.097 kb on + strand at 215.123 kb on + strand at 215.123 kb on + strand at 215.123 kb on + strand at 215.124 kb on - strand at 215.124 kb on - strand at 215.125 kb on + strand at 215.126 kb on - strand at 215.129 kb on + strand at 215.130 kb on - strand at 215.131 kb on + strand at 215.131 kb on + strand at 215.132 kb on - strand at 215.132 kb on - strand at 215.142 kb on + strand at 215.204 kb on + strand at 215.217 kb on - strand at 215.231 kb on - strand at 215.358 kb on + strand at 215.359 kb on - strand at 215.447 kb on + strand, within IAI47_19940 at 215.457 kb on + strand, within IAI47_19940 at 215.457 kb on + strand, within IAI47_19940 at 215.457 kb on + strand, within IAI47_19940 at 215.457 kb on + strand, within IAI47_19940 at 215.458 kb on - strand, within IAI47_19940 at 215.458 kb on - strand, within IAI47_19940 at 215.495 kb on - strand, within IAI47_19940 at 215.534 kb on + strand, within IAI47_19940 at 215.535 kb on - strand, within IAI47_19940 at 215.549 kb on + strand, within IAI47_19940 at 215.610 kb on + strand at 215.611 kb on - strand at 215.611 kb on - strand at 215.625 kb on + strand at 215.625 kb on + strand at 215.626 kb on - strand at 215.626 kb on - strand at 215.657 kb on + strand at 215.657 kb on + strand at 215.689 kb on + strand at 215.689 kb on + strand at 215.690 kb on - strand at 215.690 kb on - strand at 215.698 kb on - strand at 215.698 kb on - strand at 215.702 kb on - strand at 215.714 kb on + strand at 215.853 kb on + strand, within IAI47_19945 at 216.003 kb on + strand at 216.037 kb on + strand at 216.038 kb on - strand at 216.043 kb on + strand at 216.043 kb on + strand at 216.043 kb on + strand at 216.044 kb on - strand at 216.044 kb on - strand at 216.044 kb on - strand at 216.044 kb on - strand at 216.070 kb on + strand at 216.070 kb on + strand at 216.070 kb on + strand at 216.071 kb on - strand at 216.071 kb on - strand at 216.071 kb on - strand at 216.109 kb on + strand at 216.109 kb on + strand at 216.110 kb on - strand at 216.110 kb on - strand at 216.120 kb on + strand at 216.120 kb on + strand at 216.120 kb on + strand at 216.120 kb on + strand at 216.121 kb on - strand at 216.121 kb on - strand at 216.121 kb on - strand at 216.124 kb on + strand at 216.124 kb on + strand at 216.124 kb on + strand at 216.124 kb on + strand at 216.125 kb on - strand at 216.210 kb on + strand at 216.211 kb on - strand at 216.239 kb on - strand at 216.255 kb on + strand at 216.255 kb on + strand at 216.256 kb on - strand at 216.386 kb on + strand at 216.387 kb on - strand at 216.387 kb on - strand at 216.427 kb on + strand at 216.427 kb on + strand at 216.427 kb on + strand at 216.428 kb on - strand at 216.434 kb on - strand at 216.562 kb on - strand at 216.570 kb on + strand at 216.690 kb on + strand at 216.842 kb on + strand at 216.847 kb on + strand at 216.847 kb on + strand at 216.848 kb on - strand at 216.922 kb on + strand at 216.922 kb on + strand at 216.922 kb on + strand at 216.922 kb on + strand at 216.924 kb on + strand at 216.924 kb on + strand at 216.937 kb on + strand at 216.981 kb on + strand at 217.003 kb on + strand at 217.003 kb on + strand at 217.003 kb on + strand at 217.004 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 214,822 + -2.4 214,856 - +1.3 214,879 + -0.0 214,884 - +0.8 214,992 - +0.6 214,999 - -0.7 215,036 + -1.7 215,055 - -1.0 215,055 - -0.4 215,055 - +0.4 215,055 - +1.7 215,097 + +0.8 215,123 + -2.0 215,123 + -2.8 215,123 + +2.6 215,124 - -2.2 215,124 - -0.7 215,125 + +0.4 215,126 - -2.4 215,129 + +0.1 215,130 - -1.9 215,131 + +2.5 215,131 + -1.0 215,132 - -1.4 215,132 - +2.4 215,142 + +1.7 215,204 + -0.7 215,217 - -1.0 215,231 - -3.3 215,358 + -0.2 215,359 - -1.7 215,447 + IAI47_19940 0.40 -0.0 215,457 + IAI47_19940 0.44 +0.2 215,457 + IAI47_19940 0.44 -1.0 215,457 + IAI47_19940 0.44 -0.4 215,457 + IAI47_19940 0.44 -1.0 215,458 - IAI47_19940 0.44 -1.8 215,458 - IAI47_19940 0.44 -0.0 215,495 - IAI47_19940 0.58 -1.6 215,534 + IAI47_19940 0.72 +0.8 215,535 - IAI47_19940 0.73 -1.6 215,549 + IAI47_19940 0.78 -0.7 215,610 + +1.5 215,611 - +1.6 215,611 - -1.7 215,625 + +1.6 215,625 + -2.6 215,626 - +0.6 215,626 - -1.0 215,657 + -0.6 215,657 + +0.3 215,689 + -0.8 215,689 + +0.1 215,690 - -1.4 215,690 - -3.8 215,698 - -0.5 215,698 - +0.2 215,702 - -0.7 215,714 + +1.6 215,853 + IAI47_19945 0.27 -0.9 216,003 + +0.2 216,037 + -0.6 216,038 - -1.0 216,043 + +0.4 216,043 + -0.3 216,043 + -1.4 216,044 - -0.2 216,044 - -2.1 216,044 - -1.0 216,044 - -0.4 216,070 + -0.2 216,070 + +0.1 216,070 + +1.6 216,071 - -0.7 216,071 - -0.8 216,071 - +0.1 216,109 + +1.3 216,109 + +2.3 216,110 - +0.8 216,110 - +1.6 216,120 + +2.7 216,120 + +0.4 216,120 + -1.0 216,120 + +1.7 216,121 - -1.0 216,121 - +0.9 216,121 - -0.9 216,124 + +0.6 216,124 + +0.4 216,124 + -1.0 216,124 + -0.0 216,125 - +0.2 216,210 + +0.5 216,211 - +0.6 216,239 - +1.0 216,255 + +0.7 216,255 + -2.0 216,256 - -2.1 216,386 + +1.6 216,387 - +1.3 216,387 - -0.5 216,427 + +0.2 216,427 + -1.2 216,427 + -0.0 216,428 - +1.6 216,434 - +0.6 216,562 - +1.6 216,570 + -1.1 216,690 + -1.0 216,842 + -1.7 216,847 + -0.1 216,847 + -0.0 216,848 - +1.3 216,922 + +0.8 216,922 + -2.1 216,922 + +1.0 216,922 + -1.9 216,924 + -0.2 216,924 + +0.6 216,937 + -0.0 216,981 + +0.6 217,003 + -0.4 217,003 + -0.1 217,003 + -0.2 217,004 - -0.4
Or see this region's nucleotide sequence