Strain Fitness in Pantoea sp. MT58 around IAI47_16930

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,594,184	-		IAI47_16925	0.55	-1.1
3,594,221	+		IAI47_16925	0.56	+0.4
3,594,221	+		IAI47_16925	0.56	-2.9
3,594,221	+		IAI47_16925	0.56	-0.9
3,594,222	-		IAI47_16925	0.57	+0.3
3,594,222	-		IAI47_16925	0.57	-2.4
3,594,222	-		IAI47_16925	0.57	-0.7
3,594,222	-		IAI47_16925	0.57	+2.5
3,594,222	-		IAI47_16925	0.57	+0.5
3,594,222	-		IAI47_16925	0.57	-0.6
3,594,225	-		IAI47_16925	0.57	-3.9
3,594,225	-		IAI47_16925	0.57	-2.8
3,594,390	+		IAI47_16925	0.64	-1.1
3,594,390	+		IAI47_16925	0.64	-2.2
3,594,390	+		IAI47_16925	0.64	-1.4
3,594,390	+		IAI47_16925	0.64	-0.5
3,594,390	+		IAI47_16925	0.64	-0.6
3,594,391	-		IAI47_16925	0.64	-1.7
3,594,391	-		IAI47_16925	0.64	-0.2
3,594,391	-		IAI47_16925	0.64	-0.5
3,594,391	-		IAI47_16925	0.64	+1.8
3,594,480	+		IAI47_16925	0.69	-2.7
3,594,480	+		IAI47_16925	0.69	+1.3
3,594,481	-		IAI47_16925	0.69	-2.1
3,594,481	-		IAI47_16925	0.69	-2.3
3,594,481	-		IAI47_16925	0.69	-0.8
3,594,481	-		IAI47_16925	0.69	-1.9
3,594,481	-		IAI47_16925	0.69	-0.5
3,594,481	-		IAI47_16925	0.69	-1.0
3,594,482	+		IAI47_16925	0.69	+1.2
3,594,482	+		IAI47_16925	0.69	+0.7
3,594,524	+		IAI47_16925	0.71	-0.6
3,594,524	+		IAI47_16925	0.71	+0.7
3,594,525	-		IAI47_16925	0.71	-0.5
3,594,525	-		IAI47_16925	0.71	-0.1
3,594,525	-		IAI47_16925	0.71	+0.2
3,594,534	+		IAI47_16925	0.71	+1.8
3,594,534	+		IAI47_16925	0.71	-2.2
3,594,535	-		IAI47_16925	0.71	-3.0
3,594,558	-		IAI47_16925	0.72	-3.6
3,594,558	-		IAI47_16925	0.72	-0.3
3,594,581	+		IAI47_16925	0.73	+0.9
3,594,581	+		IAI47_16925	0.73	+0.8
3,594,581	+		IAI47_16925	0.73	+0.3
3,594,581	+		IAI47_16925	0.73	-2.1
3,594,581	+		IAI47_16925	0.73	-0.7
3,594,581	+		IAI47_16925	0.73	-3.5
3,594,581	+		IAI47_16925	0.73	+0.3
3,594,582	-		IAI47_16925	0.73	-0.3
3,594,582	-		IAI47_16925	0.73	-2.2
3,594,582	-				+1.5
3,594,621	+		IAI47_16925	0.75	-1.7
3,594,621	+		IAI47_16925	0.75	+0.8
3,594,622	-		IAI47_16925	0.75	+0.4
3,594,636	+		IAI47_16925	0.76	-3.8
3,594,636	+		IAI47_16925	0.76	-0.7
3,594,636	+		IAI47_16925	0.76	-0.4
3,594,636	+		IAI47_16925	0.76	-1.8
3,594,636	+		IAI47_16925	0.76	-3.0
3,594,636	+		IAI47_16925	0.76	+0.8
3,594,637	-		IAI47_16925	0.76	+0.0
3,594,726	+		IAI47_16925	0.80	-0.8
3,594,726	+		IAI47_16925	0.80	-1.9
3,594,726	+		IAI47_16925	0.80	-0.7
3,594,726	+		IAI47_16925	0.80	-2.4
3,594,726	+		IAI47_16925	0.80	-0.2
3,594,727	-		IAI47_16925	0.80	-1.9
3,594,727	-		IAI47_16925	0.80	-2.3
3,594,727	-		IAI47_16925	0.80	-1.8
3,594,727	-		IAI47_16925	0.80	+0.3
3,594,729	+		IAI47_16925	0.80	-0.9
3,594,729	+		IAI47_16925	0.80	-0.9
3,594,729	+		IAI47_16925	0.80	-1.5
3,594,729	+		IAI47_16925	0.80	+0.1
3,594,730	-		IAI47_16925	0.80	-0.5
3,594,730	-		IAI47_16925	0.80	+1.1
3,594,730	-		IAI47_16925	0.80	+0.6
3,594,730	-		IAI47_16925	0.80	+0.7
3,594,730	-		IAI47_16925	0.80	-3.5
3,594,730	-		IAI47_16925	0.80	-0.6
3,594,774	+		IAI47_16925	0.82	+0.6
3,594,801	+		IAI47_16925	0.84	+3.3
3,594,891	+		IAI47_16925	0.88	-0.9
3,594,891	+		IAI47_16925	0.88	-1.8
3,594,891	+		IAI47_16925	0.88	+0.4
3,594,891	+		IAI47_16925	0.88	-0.9
3,594,891	+		IAI47_16925	0.88	-0.7
3,594,891	+		IAI47_16925	0.88	-1.1
3,594,892	-		IAI47_16925	0.88	-1.3
3,594,892	-		IAI47_16925	0.88	+0.7
3,594,892	-		IAI47_16925	0.88	-0.1
3,594,892	-		IAI47_16925	0.88	+0.1
3,594,897	+		IAI47_16925	0.88	+3.1
3,594,898	-		IAI47_16925	0.88	-1.6
3,594,898	-		IAI47_16925	0.88	+0.4
3,594,898	-		IAI47_16925	0.88	-0.1
3,594,898	-		IAI47_16925	0.88	-1.6
3,594,898	-		IAI47_16925	0.88	-3.3
3,594,898	-		IAI47_16925	0.88	-1.3
3,594,898	-		IAI47_16925	0.88	-2.4
3,594,913	-		IAI47_16925	0.89	-1.7
3,594,913	-		IAI47_16925	0.89	-0.4
3,594,913	-		IAI47_16925	0.89	-0.8
3,594,913	-		IAI47_16925	0.89	-0.4
3,594,915	+		IAI47_16925	0.89	-1.9
3,594,915	+		IAI47_16925	0.89	-1.1
3,594,915	+		IAI47_16925	0.89	+0.4
3,594,916	-		IAI47_16925	0.89	-0.0
3,594,923	+		IAI47_16925	0.89	-0.5
3,594,923	+		IAI47_16925	0.89	-1.0
3,594,945	+				+0.2
3,594,945	+				-1.2
3,594,946	-				-3.8
3,594,978	-				+0.6
3,594,978	-				-1.3
3,594,978	-				-1.3
3,594,992	+				+1.6
3,594,993	-				-0.2
3,595,056	+				+3.2
3,595,057	-				-0.3
3,595,156	+				+0.8
3,595,156	+				-1.8
3,595,156	+				-1.5
3,595,156	+				-1.5
3,595,157	-				-2.3
3,595,157	-				-2.2
3,595,166	+				+0.7
3,595,167	-				+0.7
3,595,167	-				-1.5
3,595,167	-				+0.5
3,595,167	-				-3.1
3,595,169	+				-0.7
3,595,169	+				-2.6
3,595,169	+				-1.5
3,595,169	+				-1.4
3,595,169	+				-2.3
3,595,169	+				+0.8
3,595,169	+				-0.3
3,595,169	+				-2.3
3,595,169	+				-1.5
3,595,169	+				-1.4
3,595,169	+				-2.5
3,595,170	-				+0.8
3,595,170	-				-0.1
3,595,170	-				-0.7
3,595,170	-				-0.4
3,595,170	-				+0.1
3,595,170	-				+0.6
3,595,170	-				-2.1
3,595,170	-				-3.9
3,595,170	-				-1.1
3,595,170	-				-1.7
3,595,170	-				-0.6
3,595,180	+				-1.5
3,595,181	-				+0.1
3,595,183	+				-0.7
3,595,183	+				-0.2
3,595,183	+				+1.2
3,595,183	+				-1.0
3,595,183	+				-1.5
3,595,183	+				-2.6
3,595,184	-				+0.8
3,595,184	-				-0.9
3,595,184	-				+0.8
3,595,184	-				-1.6
3,595,184	-				-0.5
3,595,184	-				+0.9
3,595,184	-				-1.5
3,595,184	-				+0.4
3,595,184	-				-1.5
3,595,186	+				+0.4
3,595,186	+				-1.7
3,595,186	+				+0.2
3,595,187	-				-0.7
3,595,187	-				-2.8
3,595,187	-				-0.2
3,595,250	+		IAI47_16930	0.21	+0.6
3,595,250	+		IAI47_16930	0.21	-1.7
3,595,250	+		IAI47_16930	0.21	+0.2
3,595,251	-		IAI47_16930	0.22	-0.7
3,595,251	-		IAI47_16930	0.22	-0.8
3,595,251	-		IAI47_16930	0.22	+1.1
3,595,291	+		IAI47_16930	0.30	-0.3
3,595,291	+		IAI47_16930	0.30	-2.9
3,595,292	-		IAI47_16930	0.30	-1.6
3,595,292	-		IAI47_16930	0.30	-1.9
3,595,292	-		IAI47_16930	0.30	-0.9
3,595,333	+		IAI47_16930	0.39	-3.8
3,595,450	+		IAI47_16930	0.64	-1.3
3,595,450	+		IAI47_16930	0.64	-1.6
3,595,450	+		IAI47_16930	0.64	+0.2
3,595,450	+		IAI47_16930	0.64	+2.4
3,595,451	-		IAI47_16930	0.65	-0.7
3,595,451	-		IAI47_16930	0.65	-0.2
3,595,451	-		IAI47_16930	0.65	-0.6
3,595,451	-		IAI47_16930	0.65	-1.7
3,595,451	-		IAI47_16930	0.65	-1.1
3,595,451	-		IAI47_16930	0.65	-0.4
3,595,451	-		IAI47_16930	0.65	+1.1
3,595,514	+		IAI47_16930	0.78	-1.0
3,595,514	+		IAI47_16930	0.78	+0.2
3,595,515	-		IAI47_16930	0.78	-1.8
3,595,524	+		IAI47_16930	0.80	-0.7
3,595,525	-		IAI47_16930	0.80	-1.6
3,595,525	-		IAI47_16930	0.80	-3.6
3,595,525	-		IAI47_16930	0.80	-0.1
3,595,589	-				-1.0
3,595,589	-				+3.1
3,595,597	+				+0.7
3,595,597	+				+0.0
3,595,597	+				+1.0
3,595,598	-				-0.1
3,595,598	-				-2.3
3,595,598	-				-2.6
3,595,598	-				-1.6
3,595,609	-				-0.2
3,595,867	+		IAI47_16935	0.41	-3.6
3,595,876	+		IAI47_16935	0.42	+1.2
3,595,876	+		IAI47_16935	0.42	-0.5
3,595,877	-		IAI47_16935	0.42	+0.1
3,595,877	-		IAI47_16935	0.42	-0.7
3,595,877	-		IAI47_16935	0.42	-1.6
3,595,877	-		IAI47_16935	0.42	-0.1
3,595,878	+		IAI47_16935	0.43	+0.4
3,595,878	+		IAI47_16935	0.43	+0.9
3,595,881	-		IAI47_16935	0.43	+0.7
3,595,881	-		IAI47_16935	0.43	-1.1
3,595,941	-		IAI47_16935	0.53	-1.1
3,595,946	+		IAI47_16935	0.53	+2.0
3,595,946	+		IAI47_16935	0.53	-1.3
3,595,946	+		IAI47_16935	0.53	-0.4
3,595,946	+		IAI47_16935	0.53	+0.8
3,595,947	-		IAI47_16935	0.53	+0.4
3,595,947	-		IAI47_16935	0.53	-1.3
3,595,980	+		IAI47_16935	0.59	-0.8
3,595,980	+		IAI47_16935	0.59	-1.2
3,595,981	-		IAI47_16935	0.59	+0.2
3,595,981	-		IAI47_16935	0.59	+0.2
3,595,981	-		IAI47_16935	0.59	+0.8
3,596,020	+		IAI47_16935	0.65	-0.1
3,596,020	+		IAI47_16935	0.65	+0.2
3,596,020	+		IAI47_16935	0.65	-0.9
3,596,184	-				+0.3
3,596,207	+				-2.0
3,596,207	+				+0.6
3,596,228	+				-2.8
3,596,228	+				-0.5
3,596,228	+				-1.2
3,596,228	+				-0.9
3,596,257	+				-0.2
3,596,258	-				-0.2
3,596,269	+				-1.4
3,596,270	-				-1.2
3,596,270	-				+0.9
3,596,271	+				-0.5
3,596,271	+				+0.2
3,596,271	+				-0.6
3,596,271	+				+1.4
3,596,271	+				+1.3
3,596,271	+				+1.1
3,596,271	+				+0.3
3,596,271	+				-0.1
3,596,271	+				-1.5
3,596,271	+				-1.4
3,596,272	-				-1.6
3,596,272	-				-0.3
3,596,272	-				-0.2
3,596,272	-				-0.6
3,596,272	-				-1.2
3,596,272	-				-0.9
3,596,272	-				-1.2
3,596,272	-				-2.1
3,596,272	-				-0.4
3,596,272	-				+0.4
3,596,272	-				+0.7
3,596,277	-				-0.9
3,596,283	+				+1.9
3,596,284	-				-1.6
3,596,284	-				+1.3
3,596,333	+				+0.1
3,596,333	+				-2.1
3,596,334	-				+0.1
3,596,334	-				+1.1
3,596,334	-				+0.1
3,596,334	-				+1.5
3,596,334	-				+1.0
3,596,334	-				-0.5
3,596,334	-				-0.5
3,596,334	-				-2.3
3,596,411	-				-0.1
3,596,460	+		IAI47_16940	0.14	+0.4
3,596,461	-		IAI47_16940	0.14	-0.1
3,596,461	-		IAI47_16940	0.14	-1.4
3,596,461	-		IAI47_16940	0.14	-2.6
3,596,461	-		IAI47_16940	0.14	+0.3
3,596,461	-		IAI47_16940	0.14	-3.8
3,596,462	+		IAI47_16940	0.14	-1.3
3,596,462	+		IAI47_16940	0.14	+0.3
3,596,463	-		IAI47_16940	0.14	+1.0
3,596,507	+		IAI47_16940	0.23	-0.2
3,596,516	+		IAI47_16940	0.25	+0.0