Strain Fitness in Pantoea sp. MT58 around IAI47_11895

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,516,199	-		IAI47_11885	0.39	-2.1
2,516,199	-		IAI47_11885	0.39	-1.5
2,516,224	+		IAI47_11885	0.41	+0.3
2,516,224	+		IAI47_11885	0.41	-1.1
2,516,225	-		IAI47_11885	0.42	-0.8
2,516,225	-		IAI47_11885	0.42	+1.6
2,516,228	+		IAI47_11885	0.42	+0.6
2,516,228	+		IAI47_11885	0.42	+0.0
2,516,229	-		IAI47_11885	0.42	-0.5
2,516,240	+		IAI47_11885	0.43	-0.2
2,516,240	+		IAI47_11885	0.43	+1.6
2,516,241	-		IAI47_11885	0.43	+0.9
2,516,263	+		IAI47_11885	0.45	+0.3
2,516,263	+		IAI47_11885	0.45	-1.4
2,516,263	+		IAI47_11885	0.45	+0.4
2,516,263	+		IAI47_11885	0.45	-1.8
2,516,263	+		IAI47_11885	0.45	-2.0
2,516,264	-		IAI47_11885	0.45	+0.2
2,516,264	-		IAI47_11885	0.45	+0.3
2,516,275	+		IAI47_11885	0.46	+0.2
2,516,344	+		IAI47_11885	0.53	+1.3
2,516,344	+		IAI47_11885	0.53	+3.2
2,516,345	-		IAI47_11885	0.53	-2.6
2,516,345	-		IAI47_11885	0.53	-0.9
2,516,359	+		IAI47_11885	0.54	-0.2
2,516,359	+		IAI47_11885	0.54	+0.0
2,516,365	+		IAI47_11885	0.55	+1.4
2,516,365	+		IAI47_11885	0.55	-1.1
2,516,365	+		IAI47_11885	0.55	-1.8
2,516,366	-		IAI47_11885	0.55	+0.0
2,516,378	-		IAI47_11885	0.56	-0.0
2,516,407	+		IAI47_11885	0.59	+0.6
2,516,482	+		IAI47_11885	0.66	+2.0
2,516,482	+		IAI47_11885	0.66	-1.0
2,516,482	+		IAI47_11885	0.66	+1.2
2,516,482	+		IAI47_11885	0.66	-0.6
2,516,488	+		IAI47_11885	0.66	+4.9
2,516,489	-		IAI47_11885	0.66	-0.7
2,516,554	+		IAI47_11885	0.73	+0.2
2,516,554	+		IAI47_11885	0.73	+0.9
2,516,554	+		IAI47_11885	0.73	+0.5
2,516,555	-		IAI47_11885	0.73	+0.9
2,516,555	-		IAI47_11885	0.73	-2.4
2,516,563	+		IAI47_11885	0.73	+2.4
2,516,563	+		IAI47_11885	0.73	+0.4
2,516,563	+		IAI47_11885	0.73	-3.4
2,516,563	+		IAI47_11885	0.73	+0.3
2,516,563	+		IAI47_11885	0.73	+0.1
2,516,564	-		IAI47_11885	0.73	+3.2
2,516,603	-		IAI47_11885	0.77	+0.2
2,516,603	-		IAI47_11885	0.77	-1.4
2,516,714	+		IAI47_11885	0.88	+1.4
2,516,714	+		IAI47_11885	0.88	-1.2
2,516,714	+		IAI47_11885	0.88	+0.4
2,516,715	-		IAI47_11885	0.88	-0.4
2,516,715	-		IAI47_11885	0.88	-1.7
2,516,715	-		IAI47_11885	0.88	+4.4
2,516,715	-		IAI47_11885	0.88	-1.8
2,516,715	-		IAI47_11885	0.88	-1.3
2,516,716	+		IAI47_11885	0.88	+1.0
2,516,717	-		IAI47_11885	0.88	+0.1
2,516,749	+				-1.4
2,516,749	+				-1.7
2,516,749	+				+1.5
2,516,767	+				+0.5
2,516,797	+				-0.3
2,516,797	+				-1.2
2,516,798	-				-1.4
2,516,798	-				-0.8
2,516,830	+				-1.2
2,516,884	+		IAI47_11890	0.12	-0.7
2,516,885	-		IAI47_11890	0.12	-1.6
2,516,885	-		IAI47_11890	0.12	+2.1
2,516,885	-		IAI47_11890	0.12	+2.6
2,516,954	+		IAI47_11890	0.33	+0.4
2,517,028	+		IAI47_11890	0.56	+0.4
2,517,028	+		IAI47_11890	0.56	+0.5
2,517,028	+		IAI47_11890	0.56	+0.8
2,517,028	+		IAI47_11890	0.56	+0.5
2,517,028	+		IAI47_11890	0.56	+0.9
2,517,028	+		IAI47_11890	0.56	-0.2
2,517,029	-		IAI47_11890	0.56	-1.5
2,517,029	-		IAI47_11890	0.56	-0.3
2,517,029	-		IAI47_11890	0.56	-1.2
2,517,029	-		IAI47_11890	0.56	-0.7
2,517,044	-		IAI47_11890	0.61	+0.8
2,517,103	+		IAI47_11890	0.79	+0.8
2,517,103	+		IAI47_11890	0.79	+0.6
2,517,103	+		IAI47_11890	0.79	+0.1
2,517,103	+		IAI47_11890	0.79	-2.9
2,517,103	+		IAI47_11890	0.79	-0.7
2,517,104	-		IAI47_11890	0.79	-2.4
2,517,104	-		IAI47_11890	0.79	+0.8
2,517,104	-		IAI47_11890	0.79	+0.9
2,517,104	-		IAI47_11890	0.79	+1.2
2,517,104	-		IAI47_11890	0.79	-1.4
2,517,104	-		IAI47_11890	0.79	+0.8
2,517,104	-		IAI47_11890	0.79	-1.9
2,517,104	-		IAI47_11890	0.79	-1.4
2,517,104	-		IAI47_11890	0.79	-2.3
2,517,104	-		IAI47_11890	0.79	-1.5
2,517,104	-		IAI47_11890	0.79	+0.3
2,517,104	-		IAI47_11890	0.79	-1.1
2,517,104	-		IAI47_11890	0.79	-0.4
2,517,113	+		IAI47_11890	0.82	-0.5
2,517,169	+				-2.0
2,517,176	+				-0.9
2,517,176	+				-1.5
2,517,177	-				-0.7
2,517,177	-				-0.5
2,517,177	-				-0.1
2,517,256	+				-0.7
2,517,256	+				-1.5
2,517,256	+				+0.3
2,517,256	+				+0.3
2,517,257	-				-3.3
2,517,261	-				+0.8
2,517,456	-		IAI47_11895	0.28	+2.4
2,517,484	-		IAI47_11895	0.31	+0.8
2,517,527	+		IAI47_11895	0.36	-0.4
2,517,527	+		IAI47_11895	0.36	-0.7
2,517,527	+		IAI47_11895	0.36	-2.1
2,517,622	-		IAI47_11895	0.45	+0.5
2,517,628	+		IAI47_11895	0.45	+0.5
2,517,628	+		IAI47_11895	0.45	-0.5
2,517,628	+		IAI47_11895	0.45	+0.0
2,517,629	-		IAI47_11895	0.46	-0.1
2,517,629	-		IAI47_11895	0.46	-2.1
2,517,629	-		IAI47_11895	0.46	-0.7
2,517,659	+		IAI47_11895	0.49	+0.2
2,517,659	+		IAI47_11895	0.49	+1.4
2,517,659	+		IAI47_11895	0.49	+1.7
2,517,660	-		IAI47_11895	0.49	+0.2
2,517,660	-		IAI47_11895	0.49	+2.8
2,517,768	-		IAI47_11895	0.59	+1.5
2,517,768	-		IAI47_11895	0.59	-2.7
2,517,806	+		IAI47_11895	0.63	-0.0
2,517,806	+		IAI47_11895	0.63	-1.0
2,517,806	+		IAI47_11895	0.63	-2.8
2,517,831	+		IAI47_11895	0.66	+2.1
2,517,831	+		IAI47_11895	0.66	+2.9
2,517,831	+		IAI47_11895	0.66	-2.2
2,517,832	-		IAI47_11895	0.66	-0.8
2,517,832	-		IAI47_11895	0.66	+2.0
2,517,832	-		IAI47_11895	0.66	+0.9
2,517,832	-		IAI47_11895	0.66	+2.4
2,517,832	-		IAI47_11895	0.66	+0.4
2,517,832	-		IAI47_11895	0.66	-1.7
2,517,863	+		IAI47_11895	0.69	+1.3
2,517,863	+		IAI47_11895	0.69	-1.2
2,517,863	+		IAI47_11895	0.69	+0.2
2,517,864	-		IAI47_11895	0.69	+0.0
2,517,875	+		IAI47_11895	0.70	-2.8
2,517,875	+		IAI47_11895	0.70	+2.5
2,517,875	+		IAI47_11895	0.70	-0.8
2,517,876	-		IAI47_11895	0.70	-2.3
2,517,876	-		IAI47_11895	0.70	+0.9
2,517,876	-		IAI47_11895	0.70	-1.4
2,517,919	+		IAI47_11895	0.74	+0.2
2,517,919	+		IAI47_11895	0.74	+1.3
2,517,920	-		IAI47_11895	0.74	+0.5
2,517,960	+		IAI47_11895	0.78	+0.7
2,517,960	+		IAI47_11895	0.78	+0.4
2,517,961	-		IAI47_11895	0.78	+2.4
2,518,040	+		IAI47_11895	0.86	+0.6
2,518,041	-		IAI47_11895	0.86	+1.1
2,518,063	+		IAI47_11895	0.89	+1.1
2,518,064	-		IAI47_11895	0.89	+1.6
2,518,064	-		IAI47_11895	0.89	+0.2
2,518,064	-		IAI47_11895	0.89	+2.2
2,518,148	+				+0.7
2,518,149	-				+0.6
2,518,164	-				-0.7
2,518,178	+				+0.3
2,518,178	+				+1.1
2,518,179	-				+2.5
2,518,223	-				-1.4
2,518,227	+				-2.0
2,518,227	+				-1.5
2,518,227	+				-0.4
2,518,227	+				-1.5
2,518,227	+				-1.5
2,518,227	+				+0.6
2,518,228	-				+0.4
2,518,286	-				+0.4
2,518,313	+				+2.6
2,518,314	-				-1.3
2,518,323	-				+0.0
2,518,323	-				+0.3
2,518,399	-				-0.4
2,518,403	-				-1.7
2,518,465	+				-1.0
2,518,466	-				+0.2
2,518,472	+				-0.4
2,518,473	-				+0.6
2,518,484	+				+1.1
2,518,484	+				-0.1
2,518,484	+				-0.5
2,518,484	+				-1.4
2,518,484	+				-0.6
2,518,485	-				-2.3
2,518,485	-				-0.6
2,518,486	+				-0.7
2,518,538	-				+0.9
2,518,538	-				+0.3
2,518,541	+				+0.3
2,518,542	-				-2.7
2,518,577	-				+1.3
2,518,592	-				-2.2
2,518,646	-				-2.8
2,518,664	-				+2.6
2,518,665	+				-0.4
2,518,671	+				-0.5
2,518,671	+				-1.0
2,518,671	+				+1.5
2,518,671	+				-2.1
2,518,672	-				-1.0
2,518,672	-				-0.5
2,518,683	-				+3.2
2,518,683	-				+1.0
2,518,713	+				-0.5
2,518,714	-				+0.6
2,518,714	-				+0.2
2,518,752	+				-0.5
2,518,804	+				+0.3
2,518,804	+				+1.3
2,518,805	-				+1.5
2,518,880	-				+0.0
2,518,880	-				-1.7
2,518,880	-				+0.6
2,518,900	+				-0.2
2,518,900	+				+0.6
2,518,900	+				-2.3
2,518,901	-				+0.6