Strain Fitness in Pantoea sp. MT58 around IAI47_10710

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,265,079	+		IAI47_10700	0.67	+2.5
2,265,079	+		IAI47_10700	0.67	-1.2
2,265,080	-		IAI47_10700	0.67	-1.6
2,265,080	-		IAI47_10700	0.67	-0.6
2,265,080	-		IAI47_10700	0.67	-0.1
2,265,136	+		IAI47_10700	0.72	+1.7
2,265,238	+		IAI47_10700	0.80	+0.7
2,265,238	+		IAI47_10700	0.80	+0.4
2,265,238	+		IAI47_10700	0.80	-1.5
2,265,238	+		IAI47_10700	0.80	+1.9
2,265,239	-		IAI47_10700	0.80	-0.5
2,265,272	-		IAI47_10700	0.83	-0.4
2,265,272	-		IAI47_10700	0.83	-2.5
2,265,272	-		IAI47_10700	0.83	+0.5
2,265,272	-		IAI47_10700	0.83	+1.0
2,265,272	-		IAI47_10700	0.83	+0.9
2,265,272	-		IAI47_10700	0.83	-0.6
2,265,436	+				-0.1
2,265,436	+				-0.9
2,265,436	+				+1.4
2,265,436	+				+1.2
2,265,436	+				-0.3
2,265,436	+				-2.2
2,265,437	-				+2.5
2,265,437	-				+0.7
2,265,437	-				-0.6
2,265,474	-				+2.0
2,265,495	-				+0.6
2,265,537	-				+0.1
2,265,540	+				+0.2
2,265,540	+				+0.9
2,265,541	-				+4.4
2,265,541	-				-1.2
2,265,541	-				+0.4
2,265,544	+				+1.5
2,265,544	+				+1.5
2,265,544	+				+1.1
2,265,545	-				-1.5
2,265,545	-				+1.7
2,265,545	-				-2.1
2,265,545	-				+0.0
2,265,545	-				-1.8
2,265,599	-				+1.1
2,265,599	-				+2.6
2,265,613	+				+1.5
2,265,613	+				+0.4
2,265,613	+				+0.9
2,265,622	-				-0.9
2,265,622	-				-0.9
2,265,622	-				-0.3
2,265,776	+		IAI47_10705	0.31	-1.0
2,265,777	-		IAI47_10705	0.31	+1.4
2,265,796	+		IAI47_10705	0.39	-0.3
2,265,796	+		IAI47_10705	0.39	+0.1
2,265,796	+		IAI47_10705	0.39	-1.3
2,265,796	+		IAI47_10705	0.39	-1.5
2,265,797	-		IAI47_10705	0.40	+0.7
2,265,799	+		IAI47_10705	0.41	+0.3
2,265,799	+		IAI47_10705	0.41	-0.5
2,265,799	+		IAI47_10705	0.41	+1.2
2,265,799	+		IAI47_10705	0.41	+0.7
2,265,799	+		IAI47_10705	0.41	+1.1
2,265,799	+		IAI47_10705	0.41	-0.1
2,265,799	+		IAI47_10705	0.41	-0.3
2,265,799	+		IAI47_10705	0.41	-1.6
2,265,799	+		IAI47_10705	0.41	-0.2
2,265,799	+		IAI47_10705	0.41	+0.1
2,265,799	+		IAI47_10705	0.41	+1.0
2,265,799	+		IAI47_10705	0.41	-1.3
2,265,799	+		IAI47_10705	0.41	-1.9
2,265,800	-		IAI47_10705	0.41	+0.7
2,265,800	-		IAI47_10705	0.41	+0.1
2,265,800	-		IAI47_10705	0.41	-0.3
2,265,800	-		IAI47_10705	0.41	+0.4
2,265,800	-		IAI47_10705	0.41	-1.6
2,265,800	-		IAI47_10705	0.41	-1.6
2,265,800	-		IAI47_10705	0.41	-1.3
2,265,800	-		IAI47_10705	0.41	-1.6
2,265,800	-		IAI47_10705	0.41	+0.1
2,265,800	-		IAI47_10705	0.41	+0.8
2,265,800	-		IAI47_10705	0.41	-1.0
2,265,800	-		IAI47_10705	0.41	-0.9
2,265,800	-		IAI47_10705	0.41	+0.5
2,265,800	-		IAI47_10705	0.41	-0.6
2,265,800	-		IAI47_10705	0.41	-0.6
2,265,803	+		IAI47_10705	0.42	-0.7
2,265,803	+		IAI47_10705	0.42	+0.2
2,265,803	+		IAI47_10705	0.42	-1.8
2,265,803	+		IAI47_10705	0.42	-0.6
2,265,803	+		IAI47_10705	0.42	+0.4
2,265,804	-		IAI47_10705	0.43	-0.2
2,265,814	+		IAI47_10705	0.47	+0.2
2,265,814	+		IAI47_10705	0.47	+0.1
2,265,814	+		IAI47_10705	0.47	+0.3
2,265,814	+		IAI47_10705	0.47	+1.4
2,265,815	-		IAI47_10705	0.47	+1.1
2,265,818	+		IAI47_10705	0.49	+1.2
2,265,818	+		IAI47_10705	0.49	+0.1
2,265,819	-		IAI47_10705	0.49	+0.7
2,265,819	-		IAI47_10705	0.49	-3.0
2,265,819	-		IAI47_10705	0.49	+1.1
2,265,819	-		IAI47_10705	0.49	+1.7
2,265,819	-		IAI47_10705	0.49	+0.9
2,265,819	-		IAI47_10705	0.49	+0.2
2,265,819	-		IAI47_10705	0.49	+1.2
2,265,819	-		IAI47_10705	0.49	-1.3
2,265,823	+		IAI47_10705	0.51	+0.5
2,265,823	+		IAI47_10705	0.51	+1.9
2,265,823	+		IAI47_10705	0.51	-0.5
2,265,823	+		IAI47_10705	0.51	+0.5
2,265,886	+		IAI47_10705	0.78	-2.8
2,265,886	+		IAI47_10705	0.78	+1.6
2,265,887	-		IAI47_10705	0.78	-0.9
2,265,887	-		IAI47_10705	0.78	-1.3
2,265,887	-		IAI47_10705	0.78	+0.6
2,265,951	+				+0.4
2,265,951	+				-0.1
2,266,014	-				+1.0
2,266,152	+		IAI47_10710	0.15	-0.2
2,266,209	+		IAI47_10710	0.20	-1.3
2,266,209	+		IAI47_10710	0.20	+1.2
2,266,258	+		IAI47_10710	0.24	+1.4
2,266,258	+		IAI47_10710	0.24	-0.6
2,266,259	-		IAI47_10710	0.24	-0.3
2,266,275	+		IAI47_10710	0.26	+1.1
2,266,337	+		IAI47_10710	0.31	+1.5
2,266,386	+		IAI47_10710	0.36	+2.1
2,266,387	-		IAI47_10710	0.36	+1.7
2,266,487	+		IAI47_10710	0.45	-1.0
2,266,488	-		IAI47_10710	0.45	+1.0
2,266,488	-		IAI47_10710	0.45	-0.9
2,266,488	-		IAI47_10710	0.45	-1.7
2,266,530	+		IAI47_10710	0.49	-0.0
2,266,530	+		IAI47_10710	0.49	+0.6
2,266,530	+		IAI47_10710	0.49	-2.2
2,266,531	-		IAI47_10710	0.49	-0.6
2,266,531	-		IAI47_10710	0.49	+0.4
2,266,531	-		IAI47_10710	0.49	+1.1
2,266,531	-		IAI47_10710	0.49	+1.5
2,266,531	-		IAI47_10710	0.49	+1.7
2,266,531	-		IAI47_10710	0.49	-1.3
2,266,546	-		IAI47_10710	0.50	-1.2
2,266,606	-		IAI47_10710	0.55	-1.3
2,266,752	+		IAI47_10710	0.68	+0.6
2,266,752	+		IAI47_10710	0.68	-0.8
2,266,752	+		IAI47_10710	0.68	+0.1
2,266,753	-		IAI47_10710	0.68	-0.4
2,266,753	-		IAI47_10710	0.68	+2.7
2,266,762	+		IAI47_10710	0.69	+2.7
2,266,762	+		IAI47_10710	0.69	-1.8
2,266,762	+		IAI47_10710	0.69	-1.2
2,266,762	+		IAI47_10710	0.69	+2.0
2,266,763	-		IAI47_10710	0.69	-1.8
2,266,763	-		IAI47_10710	0.69	+0.1
2,266,763	-		IAI47_10710	0.69	+0.4
2,266,763	-		IAI47_10710	0.69	+0.3
2,266,763	-		IAI47_10710	0.69	-1.7
2,266,763	-		IAI47_10710	0.69	+2.5
2,266,773	+		IAI47_10710	0.70	-1.6
2,266,773	+		IAI47_10710	0.70	+0.7
2,266,773	+		IAI47_10710	0.70	+0.5
2,266,773	+		IAI47_10710	0.70	-2.6
2,266,773	+		IAI47_10710	0.70	-0.5
2,266,774	-		IAI47_10710	0.70	+0.7
2,266,774	-		IAI47_10710	0.70	-1.5
2,266,774	-		IAI47_10710	0.70	+0.7
2,266,774	-		IAI47_10710	0.70	-0.0
2,266,774	-		IAI47_10710	0.70	+0.9
2,266,774	-		IAI47_10710	0.70	-1.1
2,266,774	-		IAI47_10710	0.70	+0.4
2,266,774	-		IAI47_10710	0.70	+0.9
2,266,776	+		IAI47_10710	0.70	+1.2
2,266,777	-		IAI47_10710	0.71	+0.4
2,266,777	-		IAI47_10710	0.71	+2.3
2,266,777	-		IAI47_10710	0.71	+3.3
2,266,777	-		IAI47_10710	0.71	-0.2
2,267,000	+				-0.7
2,267,001	-				+0.1
2,267,001	-				+1.1
2,267,001	-				+0.3
2,267,001	-				+1.0
2,267,022	+				+0.1
2,267,022	+				-0.2
2,267,090	+				-0.6
2,267,091	-				+0.7
2,267,091	-				+2.4
2,267,106	+				+1.2
2,267,106	+				+2.0
2,267,106	+				-0.3
2,267,106	+				-1.5
2,267,107	-				-1.8
2,267,107	-				-0.7
2,267,110	+				-1.7
2,267,110	+				-1.6
2,267,110	+				-2.6
2,267,111	-				-2.4
2,267,111	-				+0.7
2,267,111	-				-1.6
2,267,111	-				-1.3
2,267,111	-				+0.2
2,267,117	+				+1.5
2,267,117	+				-0.0
2,267,118	-				+0.5
2,267,118	-				+3.6
2,267,163	-				+0.4
2,267,173	-				+2.3
2,267,178	+				+0.5
2,267,184	+				+1.1
2,267,184	+				-1.1
2,267,185	-				+0.4
2,267,221	+				+0.3
2,267,252	-				+0.7
2,267,252	-				+0.3
2,267,252	-				-0.6
2,267,257	+				+1.9
2,267,267	+				+0.7
2,267,267	+				+1.7
2,267,267	+				+1.3
2,267,267	+				-0.2
2,267,267	+				+1.1
2,267,267	+				+1.0
2,267,267	+				+0.1
2,267,268	-				+1.5
2,267,268	-				-2.0
2,267,268	-				-0.3
2,267,268	-				+0.7
2,267,268	-				-0.6
2,267,268	-				-0.6
2,267,268	-				-0.6
2,267,268	-				+1.0
2,267,272	+				+0.1
2,267,272	+				-1.1
2,267,273	-				+2.3
2,267,273	-				-1.6
2,267,273	-				+1.2
2,267,273	-				-2.0
2,267,330	+				+0.2
2,267,330	+				+0.2
2,267,330	+				+0.6
2,267,330	+				+0.4
2,267,331	-				+0.1
2,267,331	-				+0.8
2,267,331	-				+1.0
2,267,331	-				+0.4
2,267,331	-				+0.6
2,267,331	-				+1.7
2,267,332	+				-0.1
2,267,332	+				+1.3
2,267,332	+				+0.6
2,267,332	+				+2.0
2,267,332	+				+1.3
2,267,333	-				-0.7
2,267,333	-				+0.7
2,267,333	-				+0.4
2,267,333	-				+2.9
2,267,346	+				+1.0
2,267,347	-				-2.2
2,267,355	-				+0.5
2,267,395	-				-1.0
2,267,402	+				+1.3
2,267,403	-				+1.7
2,267,403	-				-1.2
2,267,403	-				-2.8
2,267,427	+				+2.2
2,267,427	+				-0.3
2,267,427	+				+0.1
2,267,427	+				+2.6
2,267,427	+				-0.5
2,267,427	+				+1.2
2,267,428	-				-1.9
2,267,428	-				-1.1
2,267,428	-				-1.1
2,267,428	-				-0.3
2,267,428	-				-2.3
2,267,442	+		IAI47_10715	0.11	+0.7
2,267,442	+		IAI47_10715	0.11	+2.0
2,267,442	+		IAI47_10715	0.11	-0.4
2,267,442	+		IAI47_10715	0.11	+1.4
2,267,443	-		IAI47_10715	0.12	-0.5
2,267,443	-		IAI47_10715	0.12	+0.1
2,267,443	-		IAI47_10715	0.12	-2.4
2,267,443	-		IAI47_10715	0.12	+1.7
2,267,448	+		IAI47_10715	0.13	+1.6
2,267,448	+		IAI47_10715	0.13	-1.7
2,267,448	+		IAI47_10715	0.13	-0.1
2,267,449	-		IAI47_10715	0.13	-2.3
2,267,449	-		IAI47_10715	0.13	-0.6
2,267,449	-		IAI47_10715	0.13	-0.9
2,267,449	-		IAI47_10715	0.13	-1.3
2,267,454	+		IAI47_10715	0.14	+3.1
2,267,454	+		IAI47_10715	0.14	+0.4
2,267,455	-		IAI47_10715	0.14	-1.5
2,267,469	+		IAI47_10715	0.17	+2.7
2,267,469	+		IAI47_10715	0.17	-2.5
2,267,470	-		IAI47_10715	0.17	-1.1
2,267,470	-		IAI47_10715	0.17	-1.6
2,267,473	+		IAI47_10715	0.18	+1.7
2,267,473	+		IAI47_10715	0.18	+1.6
2,267,473	+		IAI47_10715	0.18	+0.7
2,267,474	-		IAI47_10715	0.18	-0.7
2,267,474	-		IAI47_10715	0.18	-1.6
2,267,474	-		IAI47_10715	0.18	+1.3
2,267,474	-		IAI47_10715	0.18	+0.2
2,267,474	-		IAI47_10715	0.18	+1.2
2,267,474	-		IAI47_10715	0.18	+0.1
2,267,474	-		IAI47_10715	0.18	+0.1
2,267,512	+		IAI47_10715	0.26	+1.0
2,267,517	+		IAI47_10715	0.27	-0.6
2,267,517	+		IAI47_10715	0.27	+0.4
2,267,517	+		IAI47_10715	0.27	-0.3
2,267,518	-		IAI47_10715	0.28	-2.1
2,267,518	-		IAI47_10715	0.28	-0.1
2,267,518	-		IAI47_10715	0.28	+1.7
2,267,522	+		IAI47_10715	0.28	+1.7
2,267,523	-		IAI47_10715	0.29	-2.6
2,267,523	-		IAI47_10715	0.29	-0.6
2,267,523	-		IAI47_10715	0.29	-1.1
2,267,523	-		IAI47_10715	0.29	-0.6
2,267,597	+		IAI47_10715	0.44	+1.2
2,267,598	-		IAI47_10715	0.45	-2.3
2,267,613	+		IAI47_10715	0.48	+0.4
2,267,613	+		IAI47_10715	0.48	-0.7
2,267,614	-		IAI47_10715	0.48	-1.8
2,267,614	-		IAI47_10715	0.48	-2.4
2,267,616	+		IAI47_10715	0.49	+1.4
2,267,616	+		IAI47_10715	0.49	+2.3
2,267,616	+		IAI47_10715	0.49	+1.6
2,267,616	+		IAI47_10715	0.49	-1.3
2,267,616	+		IAI47_10715	0.49	-0.1
2,267,616	+		IAI47_10715	0.49	-0.7
2,267,616	+		IAI47_10715	0.49	+0.9
2,267,616	+		IAI47_10715	0.49	-0.3
2,267,617	-		IAI47_10715	0.49	+0.5
2,267,617	-		IAI47_10715	0.49	+1.0
2,267,641	-		IAI47_10715	0.54	-0.3
2,267,641	-		IAI47_10715	0.54	+1.1
2,267,641	-		IAI47_10715	0.54	-2.3
2,267,641	-		IAI47_10715	0.54	+1.5
2,267,739	+		IAI47_10715	0.75	+0.1
2,267,899	-				+2.0
2,267,927	-				+0.6
2,268,017	+		IAI47_10720	0.27	-0.6
2,268,064	+		IAI47_10720	0.38	+0.2