Strain Fitness in Pantoea sp. MT58 around IAI47_09100

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,921,663	+		IAI47_09090	0.43	+1.2
1,921,783	+		IAI47_09090	0.55	-0.5
1,921,783	+		IAI47_09090	0.55	-0.6
1,921,940	+		IAI47_09090	0.71	-0.1
1,921,940	+		IAI47_09090	0.71	-1.0
1,921,940	+		IAI47_09090	0.71	+1.2
1,921,940	+		IAI47_09090	0.71	-1.3
1,921,940	+		IAI47_09090	0.71	+0.1
1,921,940	+		IAI47_09090	0.71	+0.8
1,921,940	+		IAI47_09090	0.71	-0.9
1,921,940	+		IAI47_09090	0.71	-0.5
1,921,941	-		IAI47_09090	0.71	-0.1
1,921,941	-		IAI47_09090	0.71	-1.5
1,921,970	+		IAI47_09090	0.74	+1.6
1,921,970	+		IAI47_09090	0.74	-2.0
1,921,970	+		IAI47_09090	0.74	+0.7
1,921,970	+		IAI47_09090	0.74	+0.9
1,921,971	-		IAI47_09090	0.74	-0.8
1,921,971	-		IAI47_09090	0.74	-0.6
1,921,971	-		IAI47_09090	0.74	+1.7
1,921,982	+		IAI47_09090	0.75	+1.6
1,921,982	+		IAI47_09090	0.75	+0.1
1,921,983	-		IAI47_09090	0.75	+0.1
1,921,983	-		IAI47_09090	0.75	-1.1
1,921,983	-		IAI47_09090	0.75	-1.6
1,922,003	+		IAI47_09090	0.77	-0.0
1,922,003	+		IAI47_09090	0.77	-0.5
1,922,003	+		IAI47_09090	0.77	-0.1
1,922,003	+		IAI47_09090	0.77	-1.9
1,922,003	+		IAI47_09090	0.77	+4.0
1,922,003	+		IAI47_09090	0.77	+2.1
1,922,003	+		IAI47_09090	0.77	-0.2
1,922,003	+		IAI47_09090	0.77	-1.1
1,922,004	-		IAI47_09090	0.77	-0.2
1,922,028	+		IAI47_09090	0.80	-0.9
1,922,122	-		IAI47_09090	0.89	-0.6
1,922,122	-		IAI47_09090	0.89	-1.3
1,922,122	-		IAI47_09090	0.89	-0.1
1,922,226	+				-2.5
1,922,226	+				-0.9
1,922,226	+				-1.8
1,922,227	-				-1.1
1,922,228	+				+0.4
1,922,228	+				+0.1
1,922,229	-				+0.8
1,922,229	-				-0.3
1,922,265	-				+2.2
1,922,280	+				-0.6
1,922,280	+				-1.0
1,922,280	+				-1.3
1,922,281	-				-3.5
1,922,296	+				-1.8
1,922,296	+				-2.1
1,922,296	+				-1.3
1,922,296	+				-2.5
1,922,297	-				+0.1
1,922,297	-				+0.4
1,922,297	-				+0.4
1,922,548	+		IAI47_09095	0.83	-0.7
1,922,548	+		IAI47_09095	0.83	-1.1
1,922,553	+		IAI47_09095	0.85	-0.5
1,922,553	+		IAI47_09095	0.85	+1.0
1,922,553	+		IAI47_09095	0.85	+0.7
1,922,553	+		IAI47_09095	0.85	-2.1
1,922,553	+		IAI47_09095	0.85	+0.9
1,922,553	+		IAI47_09095	0.85	+0.7
1,922,554	-		IAI47_09095	0.85	-0.9
1,922,554	-		IAI47_09095	0.85	-0.8
1,922,554	-		IAI47_09095	0.85	+2.7
1,922,554	-		IAI47_09095	0.85	+1.3
1,922,554	-		IAI47_09095	0.85	+2.3
1,922,554	-		IAI47_09095	0.85	+0.1
1,922,554	-		IAI47_09095	0.85	+2.1
1,922,591	-				-0.3
1,922,602	+				-2.0
1,922,602	+				+2.7
1,922,603	-				+0.8
1,922,603	-				-1.4
1,922,603	-				+1.9
1,922,603	-				-0.9
1,922,603	-				-1.5
1,922,630	+				-1.2
1,922,631	-				-0.3
1,922,631	-				-0.9
1,922,649	+				-2.2
1,922,649	+				+1.0
1,922,655	-				-2.3
1,922,670	+				-1.9
1,922,751	+				-1.3
1,922,751	+				-2.5
1,922,751	+				+1.7
1,922,751	+				-1.9
1,922,751	+				-1.5
1,922,751	+				-0.9
1,922,752	-				+0.7
1,922,752	-				+0.4
1,922,752	-				-0.9
1,922,752	-				-2.4
1,922,752	-				-0.7
1,922,752	-				+1.1
1,922,752	-				-2.3
1,922,752	-				-2.0
1,922,828	+		IAI47_09100	0.12	-2.0
1,922,828	+		IAI47_09100	0.12	-0.2
1,922,829	-		IAI47_09100	0.12	-1.3
1,922,829	-		IAI47_09100	0.12	-0.5
1,922,893	+		IAI47_09100	0.17	-1.5
1,922,893	+		IAI47_09100	0.17	-0.6
1,922,893	+		IAI47_09100	0.17	-0.9
1,922,894	-		IAI47_09100	0.17	-0.5
1,922,894	-		IAI47_09100	0.17	+0.7
1,922,894	-		IAI47_09100	0.17	-2.3
1,922,894	-		IAI47_09100	0.17	-1.5
1,922,922	+		IAI47_09100	0.19	+0.7
1,923,049	+		IAI47_09100	0.27	-0.5
1,923,049	+		IAI47_09100	0.27	-2.3
1,923,049	+		IAI47_09100	0.27	-1.2
1,923,050	-		IAI47_09100	0.28	+0.1
1,923,050	-		IAI47_09100	0.28	+0.8
1,923,050	-		IAI47_09100	0.28	-2.9
1,923,050	-		IAI47_09100	0.28	-3.1
1,923,050	-		IAI47_09100	0.28	-1.3
1,923,077	+		IAI47_09100	0.29	-3.2
1,923,077	+		IAI47_09100	0.29	-2.0
1,923,077	+		IAI47_09100	0.29	-1.9
1,923,077	+		IAI47_09100	0.29	-1.3
1,923,077	+		IAI47_09100	0.29	-1.8
1,923,078	-		IAI47_09100	0.29	-2.2
1,923,078	-		IAI47_09100	0.29	+0.5
1,923,078	-		IAI47_09100	0.29	-2.0
1,923,078	-		IAI47_09100	0.29	-0.4
1,923,078	-		IAI47_09100	0.29	-0.5
1,923,081	+		IAI47_09100	0.30	-1.6
1,923,081	+		IAI47_09100	0.30	-2.2
1,923,082	-		IAI47_09100	0.30	-2.7
1,923,082	-		IAI47_09100	0.30	-3.1
1,923,082	-		IAI47_09100	0.30	-0.3
1,923,148	+		IAI47_09100	0.34	-2.2
1,923,148	+		IAI47_09100	0.34	-2.0
1,923,148	+		IAI47_09100	0.34	-2.2
1,923,149	-		IAI47_09100	0.34	-1.6
1,923,149	-		IAI47_09100	0.34	+0.0
1,923,149	-		IAI47_09100	0.34	-1.3
1,923,149	-		IAI47_09100	0.34	-1.1
1,923,149	-		IAI47_09100	0.34	-1.0
1,923,149	-		IAI47_09100	0.34	-2.1
1,923,149	-		IAI47_09100	0.34	-0.6
1,923,149	-		IAI47_09100	0.34	-0.6
1,923,149	-		IAI47_09100	0.34	-0.8
1,923,320	-		IAI47_09100	0.46	+0.1
1,923,320	-		IAI47_09100	0.46	+0.7
1,923,400	+		IAI47_09100	0.51	-2.5
1,923,401	-		IAI47_09100	0.52	-0.5
1,923,403	-		IAI47_09100	0.52	-2.8
1,923,403	-		IAI47_09100	0.52	+0.7
1,923,412	-		IAI47_09100	0.52	-0.6
1,923,412	-		IAI47_09100	0.52	-2.3
1,923,415	+		IAI47_09100	0.52	-1.5
1,923,416	-		IAI47_09100	0.53	+1.1
1,923,416	-		IAI47_09100	0.53	-0.3
1,923,433	+		IAI47_09100	0.54	-1.0
1,923,434	-		IAI47_09100	0.54	-0.6
1,923,434	-		IAI47_09100	0.54	+0.7
1,923,482	-		IAI47_09100	0.57	-1.5
1,923,498	-		IAI47_09100	0.58	+0.7
1,923,659	-		IAI47_09100	0.69	+1.7
1,923,661	-		IAI47_09100	0.69	-1.8
1,923,661	-		IAI47_09100	0.69	+1.4
1,923,674	+		IAI47_09100	0.70	-2.3
1,923,674	+		IAI47_09100	0.70	-2.8
1,923,674	+		IAI47_09100	0.70	-2.8
1,923,674	+		IAI47_09100	0.70	-1.5
1,923,674	+		IAI47_09100	0.70	-2.1
1,923,674	+		IAI47_09100	0.70	-2.0
1,923,674	+		IAI47_09100	0.70	+0.7
1,923,674	+		IAI47_09100	0.70	-2.5
1,923,675	-		IAI47_09100	0.70	-1.5
1,923,675	-		IAI47_09100	0.70	-2.8
1,923,675	-		IAI47_09100	0.70	-0.3
1,923,675	-		IAI47_09100	0.70	-1.5
1,923,719	-		IAI47_09100	0.73	-1.1
1,923,719	-		IAI47_09100	0.73	-1.4
1,923,736	+		IAI47_09100	0.74	-0.8
1,923,736	+		IAI47_09100	0.74	+0.1
1,923,737	-		IAI47_09100	0.75	-0.3
1,923,877	+		IAI47_09100	0.84	-1.5
1,923,878	-		IAI47_09100	0.84	+3.3
1,923,916	+		IAI47_09100	0.87	+2.0
1,923,917	-		IAI47_09100	0.87	-2.5
1,923,959	+		IAI47_09100	0.90	-1.8
1,923,959	+		IAI47_09100	0.90	-0.3
1,923,973	+				+0.5
1,923,973	+				-1.8
1,923,974	-				-1.9
1,923,974	-				-0.3
1,923,974	-				-1.8
1,923,975	+				-1.7
1,923,975	+				-0.9
1,923,975	+				+0.3
1,923,975	+				-1.5
1,923,975	+				-1.2
1,923,975	+				-2.1
1,923,975	+				-2.2
1,923,975	+				-2.3
1,923,976	-				-1.8
1,923,976	-				-1.8
1,923,976	-				-0.8
1,923,976	-				-0.5
1,923,976	-				-1.8
1,923,976	-				+0.7
1,923,976	-				+1.7
1,924,063	-				-1.2
1,924,070	+				-1.1
1,924,071	-				-0.3
1,924,077	-				-1.4
1,924,077	-				-1.8
1,924,095	+				-1.6
1,924,096	-				-1.9
1,924,096	-				-2.1
1,924,108	+				-0.4
1,924,147	+				-0.6
1,924,147	+				-2.8
1,924,148	-				-1.1
1,924,230	+				+0.8
1,924,230	+				+0.1
1,924,230	+				-0.4
1,924,230	+				+0.3
1,924,230	+				+0.7
1,924,230	+				-0.3
1,924,230	+				+0.5
1,924,231	-				-0.3
1,924,231	-				+0.1
1,924,231	-				-0.2
1,924,231	-				-0.3
1,924,231	-				-0.8
1,924,231	-				+0.3
1,924,231	-				+0.6
1,924,231	-				+0.1
1,924,231	-				+2.2
1,924,232	+				+1.3
1,924,232	+				+0.8
1,924,232	+				-0.5
1,924,233	-				+0.3
1,924,233	-				+0.7
1,924,245	+				+2.4
1,924,245	+				+0.2
1,924,245	+				+0.2
1,924,246	-				-1.8
1,924,246	-				-1.9
1,924,246	-				-0.3
1,924,246	-				-1.5
1,924,246	-				+0.1
1,924,246	-				-1.8
1,924,246	-				+1.7
1,924,308	+		IAI47_09105	0.23	+1.0
1,924,308	+		IAI47_09105	0.23	+0.7
1,924,309	-		IAI47_09105	0.24	+2.7
1,924,309	-		IAI47_09105	0.24	-3.3
1,924,309	-		IAI47_09105	0.24	-1.6
1,924,361	+		IAI47_09105	0.53	-0.5
1,924,362	-		IAI47_09105	0.54	+0.5
1,924,362	-		IAI47_09105	0.54	-1.6
1,924,363	+		IAI47_09105	0.55	-0.6
1,924,363	+		IAI47_09105	0.55	+0.7
1,924,364	-		IAI47_09105	0.55	+0.4
1,924,426	+				-0.8
1,924,427	-				+0.3
1,924,434	+				+0.6
1,924,434	+				+0.1
1,924,434	+				+0.9
1,924,435	-				-0.9
1,924,435	-				+1.7
1,924,435	-				+1.3
1,924,437	+				+1.1
1,924,437	+				+0.3
1,924,437	+				+0.3
1,924,437	+				-0.5
1,924,437	+				+0.7
1,924,437	+				+1.5
1,924,438	-				-0.1
1,924,438	-				-0.3
1,924,438	-				+2.7
1,924,439	+				+1.7
1,924,439	+				-1.2
1,924,439	+				+0.4
1,924,439	+				-0.9
1,924,439	+				+0.9
1,924,440	-				-1.4
1,924,440	-				+1.8
1,924,440	-				-0.3
1,924,440	-				-0.9
1,924,440	-				-0.9
1,924,440	-				-0.6
1,924,460	+				-1.1
1,924,461	-				-0.4
1,924,544	+		IAI47_09110	0.32	+1.7
1,924,544	+		IAI47_09110	0.32	-1.1
1,924,545	-		IAI47_09110	0.32	+0.2
1,924,545	-		IAI47_09110	0.32	-0.1
1,924,587	+		IAI47_09110	0.46	-1.8
1,924,587	+		IAI47_09110	0.46	-0.4
1,924,588	-		IAI47_09110	0.46	-1.9
1,924,588	-		IAI47_09110	0.46	+0.8
1,924,606	+		IAI47_09110	0.52	+0.5
1,924,606	+		IAI47_09110	0.52	+0.6
1,924,606	+		IAI47_09110	0.52	+1.1
1,924,615	+		IAI47_09110	0.54	-2.1
1,924,615	+		IAI47_09110	0.54	-0.6
1,924,615	+		IAI47_09110	0.54	-0.5
1,924,616	-		IAI47_09110	0.55	+1.0
1,924,616	-		IAI47_09110	0.55	-2.0
1,924,616	-		IAI47_09110	0.55	-2.3
1,924,616	-		IAI47_09110	0.55	-0.2
1,924,616	-		IAI47_09110	0.55	-0.3
1,924,616	-		IAI47_09110	0.55	+1.3
1,924,623	+		IAI47_09110	0.57	+0.4
1,924,624	-		IAI47_09110	0.57	-0.5
1,924,624	-		IAI47_09110	0.57	+0.6
1,924,710	-		IAI47_09110	0.84	+2.4
1,924,710	-		IAI47_09110	0.84	-0.4
1,924,729	+				-1.6
1,924,729	+				+0.1
1,924,729	+				+0.1
1,924,729	+				-2.3
1,924,730	-				+0.7
1,924,733	-				+1.6
1,924,733	-				+0.9
1,924,733	-				-0.8
1,924,746	+				+0.6
1,924,753	+				-2.9
1,924,754	-				-0.9
1,924,759	+				-1.9
1,924,759	+				+0.1
1,924,759	+				+0.2
1,924,760	-				+0.2
1,924,760	-				+0.9
1,924,776	+				-1.1
1,924,777	-				-0.6
1,924,805	+				+0.8
1,924,805	+				-0.2
1,924,805	+				+0.5
1,924,805	+				+0.0
1,924,805	+				+2.4
1,924,806	-				+0.4
1,924,806	-				+0.3
1,924,819	+				-0.4
1,924,819	+				-3.0
1,924,820	-				+0.5
1,924,825	+				-0.1
1,924,825	+				-1.9
1,924,826	-				+0.7
1,924,826	-				-0.3
1,924,843	-				-1.1
1,924,854	-				-1.5
1,924,854	-				-1.8
1,924,881	+				-1.6
1,924,881	+				+1.1
1,924,881	+				+0.1
1,924,882	-				-1.6
1,924,882	-				-2.2
1,924,886	-				-1.1
1,924,915	+				-1.3
1,924,916	-				-2.9
1,925,040	-				+1.1
1,925,081	+				+3.1
1,925,098	+				+0.7
1,925,099	-				-1.5
1,925,099	-				-0.9
1,925,099	-				-2.2