Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03810 and IAI47_03815 are separated by 79 nucleotides IAI47_03815 and IAI47_03820 are separated by 102 nucleotides IAI47_03820 and IAI47_03825 are separated by 21 nucleotides IAI47_03825 and IAI47_03830 are separated by 3 nucleotides
IAI47_03810: IAI47_03810 - hypothetical protein, at 794,972 to 795,382
_03810
IAI47_03815: IAI47_03815 - flavodoxin FldB, at 795,462 to 795,980
_03815
IAI47_03820: IAI47_03820 - site-specific tyrosine recombinase XerD, at 796,083 to 796,976
_03820
IAI47_03825: IAI47_03825 - bifunctional protein-disulfide isomerase/oxidoreductase DsbC, at 796,998 to 797,711
_03825
IAI47_03830: IAI47_03830 - single-stranded-DNA-specific exonuclease RecJ, at 797,715 to 799,451
_03830
Position (kb) 796
797 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 795.100 kb on + strand, within IAI47_03810 at 795.101 kb on - strand, within IAI47_03810 at 795.177 kb on + strand, within IAI47_03810 at 795.178 kb on - strand, within IAI47_03810 at 795.178 kb on - strand, within IAI47_03810 at 795.322 kb on + strand, within IAI47_03810 at 795.322 kb on + strand, within IAI47_03810 at 795.322 kb on + strand, within IAI47_03810 at 795.322 kb on + strand, within IAI47_03810 at 795.322 kb on + strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.348 kb on + strand at 795.348 kb on + strand at 795.349 kb on - strand at 795.380 kb on + strand at 795.381 kb on - strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.400 kb on - strand at 795.400 kb on - strand at 795.400 kb on - strand at 795.400 kb on - strand at 795.400 kb on - strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.403 kb on - strand at 795.403 kb on - strand at 795.403 kb on - strand at 795.433 kb on + strand at 795.433 kb on + strand at 795.434 kb on - strand at 795.434 kb on - strand at 795.489 kb on + strand at 795.490 kb on - strand at 795.490 kb on - strand at 795.490 kb on - strand at 795.490 kb on - strand at 795.490 kb on - strand at 795.610 kb on + strand, within IAI47_03815 at 795.610 kb on + strand, within IAI47_03815 at 795.610 kb on + strand, within IAI47_03815 at 795.611 kb on - strand, within IAI47_03815 at 795.611 kb on - strand, within IAI47_03815 at 795.611 kb on - strand, within IAI47_03815 at 795.611 kb on - strand, within IAI47_03815 at 795.611 kb on - strand, within IAI47_03815 at 795.629 kb on - strand, within IAI47_03815 at 795.687 kb on + strand, within IAI47_03815 at 795.687 kb on + strand, within IAI47_03815 at 795.703 kb on + strand, within IAI47_03815 at 795.704 kb on - strand, within IAI47_03815 at 795.727 kb on + strand, within IAI47_03815 at 795.728 kb on - strand, within IAI47_03815 at 795.728 kb on - strand, within IAI47_03815 at 795.728 kb on - strand, within IAI47_03815 at 795.844 kb on + strand, within IAI47_03815 at 795.844 kb on + strand, within IAI47_03815 at 795.844 kb on + strand, within IAI47_03815 at 795.844 kb on + strand, within IAI47_03815 at 795.882 kb on - strand, within IAI47_03815 at 795.882 kb on - strand, within IAI47_03815 at 795.882 kb on - strand, within IAI47_03815 at 795.895 kb on - strand, within IAI47_03815 at 795.944 kb on - strand at 795.944 kb on - strand at 795.950 kb on + strand at 795.950 kb on + strand at 795.951 kb on - strand at 795.987 kb on - strand at 795.997 kb on - strand at 795.997 kb on - strand at 796.020 kb on + strand at 796.021 kb on - strand at 796.046 kb on + strand at 796.047 kb on - strand at 796.061 kb on + strand at 796.061 kb on + strand at 796.151 kb on + strand at 796.152 kb on - strand at 796.152 kb on - strand at 796.279 kb on - strand, within IAI47_03820 at 796.463 kb on + strand, within IAI47_03820 at 796.478 kb on - strand, within IAI47_03820 at 796.506 kb on + strand, within IAI47_03820 at 796.653 kb on + strand, within IAI47_03820 at 796.653 kb on + strand, within IAI47_03820 at 796.654 kb on - strand, within IAI47_03820 at 796.654 kb on - strand, within IAI47_03820 at 796.655 kb on + strand, within IAI47_03820 at 796.655 kb on + strand, within IAI47_03820 at 796.655 kb on + strand, within IAI47_03820 at 796.768 kb on - strand, within IAI47_03820 at 796.813 kb on + strand, within IAI47_03820 at 796.813 kb on + strand, within IAI47_03820 at 796.814 kb on - strand, within IAI47_03820 at 796.814 kb on - strand, within IAI47_03820 at 796.889 kb on + strand at 796.889 kb on + strand at 796.890 kb on - strand at 796.890 kb on - strand at 796.987 kb on + strand at 796.987 kb on + strand at 796.988 kb on - strand at 796.988 kb on - strand at 796.988 kb on - strand at 796.994 kb on - strand at 797.088 kb on - strand, within IAI47_03825 at 797.172 kb on + strand, within IAI47_03825 at 797.172 kb on + strand, within IAI47_03825 at 797.172 kb on + strand, within IAI47_03825 at 797.172 kb on + strand, within IAI47_03825 at 797.173 kb on - strand, within IAI47_03825 at 797.173 kb on - strand, within IAI47_03825 at 797.173 kb on - strand, within IAI47_03825 at 797.173 kb on - strand, within IAI47_03825 at 797.173 kb on - strand, within IAI47_03825 at 797.173 kb on - strand, within IAI47_03825 at 797.173 kb on - strand, within IAI47_03825 at 797.173 kb on - strand, within IAI47_03825 at 797.173 kb on - strand, within IAI47_03825 at 797.177 kb on + strand, within IAI47_03825 at 797.195 kb on + strand, within IAI47_03825 at 797.195 kb on + strand, within IAI47_03825 at 797.195 kb on + strand, within IAI47_03825 at 797.195 kb on + strand, within IAI47_03825 at 797.195 kb on + strand, within IAI47_03825 at 797.195 kb on + strand, within IAI47_03825 at 797.196 kb on - strand, within IAI47_03825 at 797.196 kb on - strand, within IAI47_03825 at 797.196 kb on - strand, within IAI47_03825 at 797.196 kb on - strand, within IAI47_03825 at 797.196 kb on - strand, within IAI47_03825 at 797.196 kb on - strand, within IAI47_03825 at 797.196 kb on - strand, within IAI47_03825 at 797.196 kb on - strand, within IAI47_03825 at 797.196 kb on - strand, within IAI47_03825 at 797.214 kb on + strand, within IAI47_03825 at 797.214 kb on + strand, within IAI47_03825 at 797.214 kb on + strand, within IAI47_03825 at 797.214 kb on + strand, within IAI47_03825 at 797.215 kb on - strand, within IAI47_03825 at 797.215 kb on - strand, within IAI47_03825 at 797.301 kb on + strand, within IAI47_03825 at 797.301 kb on + strand, within IAI47_03825 at 797.301 kb on + strand, within IAI47_03825 at 797.302 kb on - strand, within IAI47_03825 at 797.358 kb on + strand, within IAI47_03825 at 797.358 kb on + strand, within IAI47_03825 at 797.358 kb on + strand, within IAI47_03825 at 797.391 kb on + strand, within IAI47_03825 at 797.391 kb on + strand, within IAI47_03825 at 797.391 kb on + strand, within IAI47_03825 at 797.391 kb on + strand, within IAI47_03825 at 797.391 kb on + strand, within IAI47_03825 at 797.392 kb on - strand, within IAI47_03825 at 797.408 kb on + strand, within IAI47_03825 at 797.408 kb on + strand, within IAI47_03825 at 797.409 kb on - strand, within IAI47_03825 at 797.418 kb on + strand, within IAI47_03825 at 797.498 kb on + strand, within IAI47_03825 at 797.498 kb on + strand, within IAI47_03825 at 797.499 kb on - strand, within IAI47_03825 at 797.499 kb on - strand, within IAI47_03825 at 797.499 kb on - strand, within IAI47_03825 at 797.567 kb on + strand, within IAI47_03825 at 797.580 kb on + strand, within IAI47_03825 at 797.581 kb on - strand, within IAI47_03825 at 797.581 kb on - strand, within IAI47_03825 at 797.581 kb on - strand, within IAI47_03825 at 797.655 kb on + strand at 797.655 kb on - strand at 797.656 kb on - strand at 797.719 kb on + strand at 797.719 kb on + strand at 797.720 kb on - strand at 797.805 kb on + strand at 797.805 kb on + strand at 797.806 kb on - strand at 797.806 kb on - strand at 797.868 kb on + strand at 797.868 kb on + strand at 797.869 kb on - strand at 797.939 kb on + strand, within IAI47_03830 at 797.939 kb on + strand, within IAI47_03830 at 797.939 kb on + strand, within IAI47_03830 at 797.940 kb on - strand, within IAI47_03830 at 797.940 kb on - strand, within IAI47_03830 at 797.940 kb on - strand, within IAI47_03830
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 795,100 + IAI47_03810 0.31 -0.9 795,101 - IAI47_03810 0.31 +1.4 795,177 + IAI47_03810 0.50 +0.0 795,178 - IAI47_03810 0.50 +0.1 795,178 - IAI47_03810 0.50 -0.4 795,322 + IAI47_03810 0.85 +2.1 795,322 + IAI47_03810 0.85 +1.1 795,322 + IAI47_03810 0.85 +0.9 795,322 + IAI47_03810 0.85 -0.6 795,322 + IAI47_03810 0.85 +0.4 795,323 - IAI47_03810 0.85 +0.4 795,323 - IAI47_03810 0.85 -0.1 795,323 - IAI47_03810 0.85 -3.3 795,323 - IAI47_03810 0.85 +2.2 795,323 - IAI47_03810 0.85 +0.5 795,323 - IAI47_03810 0.85 -0.2 795,323 - IAI47_03810 0.85 +1.0 795,348 + -1.2 795,348 + -0.1 795,349 - -0.7 795,380 + +0.6 795,381 - -0.0 795,399 + -0.6 795,399 + +1.2 795,399 + -0.3 795,399 + -0.1 795,399 + -0.2 795,399 + +0.3 795,399 + +0.6 795,399 + +0.6 795,400 - -0.1 795,400 - +0.1 795,400 - +0.2 795,400 - -0.8 795,400 - +1.0 795,402 + +0.7 795,402 + +0.6 795,402 + -0.9 795,402 + -1.0 795,402 + -1.5 795,402 + +1.8 795,402 + +0.8 795,403 - -1.0 795,403 - -0.2 795,403 - -0.0 795,433 + -0.0 795,433 + +2.0 795,434 - +0.6 795,434 - -0.6 795,489 + -0.1 795,490 - -0.5 795,490 - -0.4 795,490 - -0.4 795,490 - +0.2 795,490 - -0.4 795,610 + IAI47_03815 0.29 -1.2 795,610 + IAI47_03815 0.29 -0.7 795,610 + IAI47_03815 0.29 +0.9 795,611 - IAI47_03815 0.29 -0.0 795,611 - IAI47_03815 0.29 +0.6 795,611 - IAI47_03815 0.29 +0.1 795,611 - IAI47_03815 0.29 +0.3 795,611 - IAI47_03815 0.29 -2.8 795,629 - IAI47_03815 0.32 -0.6 795,687 + IAI47_03815 0.43 +0.4 795,687 + IAI47_03815 0.43 +0.2 795,703 + IAI47_03815 0.46 +1.0 795,704 - IAI47_03815 0.47 +1.0 795,727 + IAI47_03815 0.51 -1.6 795,728 - IAI47_03815 0.51 +1.9 795,728 - IAI47_03815 0.51 +1.1 795,728 - IAI47_03815 0.51 +0.1 795,844 + IAI47_03815 0.74 +0.5 795,844 + IAI47_03815 0.74 +1.7 795,844 + IAI47_03815 0.74 +0.6 795,844 + IAI47_03815 0.74 +1.2 795,882 - IAI47_03815 0.81 -1.0 795,882 - IAI47_03815 0.81 -0.4 795,882 - IAI47_03815 0.81 -2.8 795,895 - IAI47_03815 0.83 -0.8 795,944 - -0.9 795,944 - +0.3 795,950 + -0.4 795,950 + -0.3 795,951 - +0.1 795,987 - +0.3 795,997 - -0.9 795,997 - -0.2 796,020 + -0.4 796,021 - +0.0 796,046 + +0.1 796,047 - -0.9 796,061 + -0.9 796,061 + -1.5 796,151 + -3.0 796,152 - +1.6 796,152 - -0.8 796,279 - IAI47_03820 0.22 -1.2 796,463 + IAI47_03820 0.43 +0.6 796,478 - IAI47_03820 0.44 -1.4 796,506 + IAI47_03820 0.47 -1.6 796,653 + IAI47_03820 0.64 -1.2 796,653 + IAI47_03820 0.64 -1.4 796,654 - IAI47_03820 0.64 -2.2 796,654 - IAI47_03820 0.64 +1.0 796,655 + IAI47_03820 0.64 +0.6 796,655 + IAI47_03820 0.64 +1.6 796,655 + IAI47_03820 0.64 -1.4 796,768 - IAI47_03820 0.77 -2.2 796,813 + IAI47_03820 0.82 -0.4 796,813 + IAI47_03820 0.82 -1.8 796,814 - IAI47_03820 0.82 -1.9 796,814 - IAI47_03820 0.82 -1.8 796,889 + -0.4 796,889 + +0.8 796,890 - -0.4 796,890 - -1.6 796,987 + +0.1 796,987 + +1.6 796,988 - +1.9 796,988 - -0.1 796,988 - +0.9 796,994 - -0.8 797,088 - IAI47_03825 0.13 +0.9 797,172 + IAI47_03825 0.24 -1.6 797,172 + IAI47_03825 0.24 +1.7 797,172 + IAI47_03825 0.24 +3.4 797,172 + IAI47_03825 0.24 -0.3 797,173 - IAI47_03825 0.25 +0.6 797,173 - IAI47_03825 0.25 +0.8 797,173 - IAI47_03825 0.25 +0.9 797,173 - IAI47_03825 0.25 +1.0 797,173 - IAI47_03825 0.25 -0.2 797,173 - IAI47_03825 0.25 +1.7 797,173 - IAI47_03825 0.25 -1.3 797,173 - IAI47_03825 0.25 -1.9 797,173 - IAI47_03825 0.25 -0.8 797,177 + IAI47_03825 0.25 +1.0 797,195 + IAI47_03825 0.28 +0.4 797,195 + IAI47_03825 0.28 -2.6 797,195 + IAI47_03825 0.28 +2.2 797,195 + IAI47_03825 0.28 -1.3 797,195 + IAI47_03825 0.28 +0.4 797,195 + IAI47_03825 0.28 +0.9 797,196 - IAI47_03825 0.28 -0.4 797,196 - IAI47_03825 0.28 +0.2 797,196 - IAI47_03825 0.28 +0.2 797,196 - IAI47_03825 0.28 -1.0 797,196 - IAI47_03825 0.28 -0.6 797,196 - IAI47_03825 0.28 -0.4 797,196 - IAI47_03825 0.28 -1.3 797,196 - IAI47_03825 0.28 +0.2 797,196 - IAI47_03825 0.28 -1.1 797,214 + IAI47_03825 0.30 +0.7 797,214 + IAI47_03825 0.30 +0.6 797,214 + IAI47_03825 0.30 -0.0 797,214 + IAI47_03825 0.30 +0.5 797,215 - IAI47_03825 0.30 -0.5 797,215 - IAI47_03825 0.30 -1.1 797,301 + IAI47_03825 0.42 -1.3 797,301 + IAI47_03825 0.42 +1.2 797,301 + IAI47_03825 0.42 -0.6 797,302 - IAI47_03825 0.43 +0.6 797,358 + IAI47_03825 0.50 -0.6 797,358 + IAI47_03825 0.50 -1.1 797,358 + IAI47_03825 0.50 +0.6 797,391 + IAI47_03825 0.55 +0.7 797,391 + IAI47_03825 0.55 -0.4 797,391 + IAI47_03825 0.55 +0.4 797,391 + IAI47_03825 0.55 -0.3 797,391 + IAI47_03825 0.55 +1.2 797,392 - IAI47_03825 0.55 +2.0 797,408 + IAI47_03825 0.57 +0.4 797,408 + IAI47_03825 0.57 +2.0 797,409 - IAI47_03825 0.58 +1.6 797,418 + IAI47_03825 0.59 +0.5 797,498 + IAI47_03825 0.70 -1.3 797,498 + IAI47_03825 0.70 -1.8 797,499 - IAI47_03825 0.70 -0.3 797,499 - IAI47_03825 0.70 +1.2 797,499 - IAI47_03825 0.70 +1.9 797,567 + IAI47_03825 0.80 -1.3 797,580 + IAI47_03825 0.82 +0.1 797,581 - IAI47_03825 0.82 -1.3 797,581 - IAI47_03825 0.82 -0.9 797,581 - IAI47_03825 0.82 -0.6 797,655 + -2.4 797,655 - -0.4 797,656 - -2.5 797,719 + +0.6 797,719 + -3.0 797,720 - -0.8 797,805 + +0.6 797,805 + -0.3 797,806 - -2.6 797,806 - +0.3 797,868 + +0.4 797,868 + +0.8 797,869 - -1.3 797,939 + IAI47_03830 0.13 -0.0 797,939 + IAI47_03830 0.13 +0.7 797,939 + IAI47_03830 0.13 +1.6 797,940 - IAI47_03830 0.13 -2.4 797,940 - IAI47_03830 0.13 -1.1 797,940 - IAI47_03830 0.13 +0.8
Or see this region's nucleotide sequence