Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03675 and IAI47_03680 are separated by 271 nucleotides IAI47_03680 and IAI47_03685 are separated by 314 nucleotides
IAI47_03675: IAI47_03675 - M48 family metallopeptidase, at 765,859 to 766,617
_03675
IAI47_03680: IAI47_03680 - transketolase, at 766,889 to 768,883
_03680
IAI47_03685: IAI47_03685 - erythrose-4-phosphate dehydrogenase, at 769,198 to 770,217
_03685
Position (kb) 766
767
768
769 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 766.003 kb on - strand, within IAI47_03675 at 766.003 kb on - strand, within IAI47_03675 at 766.028 kb on + strand, within IAI47_03675 at 766.028 kb on + strand, within IAI47_03675 at 766.028 kb on + strand, within IAI47_03675 at 766.028 kb on + strand, within IAI47_03675 at 766.029 kb on - strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.176 kb on - strand, within IAI47_03675 at 766.176 kb on - strand, within IAI47_03675 at 766.176 kb on - strand, within IAI47_03675 at 766.176 kb on - strand, within IAI47_03675 at 766.194 kb on + strand, within IAI47_03675 at 766.194 kb on + strand, within IAI47_03675 at 766.195 kb on - strand, within IAI47_03675 at 766.195 kb on - strand, within IAI47_03675 at 766.195 kb on - strand, within IAI47_03675 at 766.200 kb on + strand, within IAI47_03675 at 766.200 kb on + strand, within IAI47_03675 at 766.200 kb on + strand, within IAI47_03675 at 766.200 kb on + strand, within IAI47_03675 at 766.201 kb on - strand, within IAI47_03675 at 766.266 kb on + strand, within IAI47_03675 at 766.266 kb on + strand, within IAI47_03675 at 766.267 kb on - strand, within IAI47_03675 at 766.267 kb on - strand, within IAI47_03675 at 766.267 kb on - strand, within IAI47_03675 at 766.267 kb on - strand, within IAI47_03675 at 766.284 kb on - strand, within IAI47_03675 at 766.284 kb on - strand, within IAI47_03675 at 766.293 kb on + strand, within IAI47_03675 at 766.294 kb on - strand, within IAI47_03675 at 766.294 kb on - strand, within IAI47_03675 at 766.338 kb on - strand, within IAI47_03675 at 766.338 kb on - strand, within IAI47_03675 at 766.344 kb on + strand, within IAI47_03675 at 766.344 kb on + strand, within IAI47_03675 at 766.344 kb on + strand, within IAI47_03675 at 766.345 kb on - strand, within IAI47_03675 at 766.345 kb on - strand, within IAI47_03675 at 766.345 kb on - strand, within IAI47_03675 at 766.346 kb on + strand, within IAI47_03675 at 766.346 kb on + strand, within IAI47_03675 at 766.346 kb on + strand, within IAI47_03675 at 766.346 kb on + strand, within IAI47_03675 at 766.346 kb on + strand, within IAI47_03675 at 766.347 kb on - strand, within IAI47_03675 at 766.347 kb on - strand, within IAI47_03675 at 766.347 kb on - strand, within IAI47_03675 at 766.347 kb on - strand, within IAI47_03675 at 766.347 kb on - strand, within IAI47_03675 at 766.368 kb on + strand, within IAI47_03675 at 766.368 kb on + strand, within IAI47_03675 at 766.368 kb on + strand, within IAI47_03675 at 766.368 kb on + strand, within IAI47_03675 at 766.368 kb on + strand, within IAI47_03675 at 766.369 kb on - strand, within IAI47_03675 at 766.369 kb on - strand, within IAI47_03675 at 766.369 kb on - strand, within IAI47_03675 at 766.369 kb on - strand, within IAI47_03675 at 766.369 kb on - strand, within IAI47_03675 at 766.371 kb on + strand, within IAI47_03675 at 766.371 kb on + strand, within IAI47_03675 at 766.372 kb on - strand, within IAI47_03675 at 766.372 kb on - strand, within IAI47_03675 at 766.396 kb on - strand, within IAI47_03675 at 766.396 kb on - strand, within IAI47_03675 at 766.396 kb on - strand, within IAI47_03675 at 766.412 kb on + strand, within IAI47_03675 at 766.412 kb on + strand, within IAI47_03675 at 766.413 kb on - strand, within IAI47_03675 at 766.440 kb on + strand, within IAI47_03675 at 766.440 kb on + strand, within IAI47_03675 at 766.440 kb on + strand, within IAI47_03675 at 766.440 kb on + strand, within IAI47_03675 at 766.441 kb on - strand, within IAI47_03675 at 766.441 kb on - strand, within IAI47_03675 at 766.467 kb on + strand, within IAI47_03675 at 766.468 kb on - strand, within IAI47_03675 at 766.483 kb on + strand, within IAI47_03675 at 766.483 kb on + strand, within IAI47_03675 at 766.484 kb on - strand, within IAI47_03675 at 766.484 kb on - strand, within IAI47_03675 at 766.503 kb on + strand, within IAI47_03675 at 766.503 kb on + strand, within IAI47_03675 at 766.503 kb on + strand, within IAI47_03675 at 766.503 kb on + strand, within IAI47_03675 at 766.504 kb on - strand, within IAI47_03675 at 766.504 kb on - strand, within IAI47_03675 at 766.505 kb on + strand, within IAI47_03675 at 766.505 kb on + strand, within IAI47_03675 at 766.505 kb on + strand, within IAI47_03675 at 766.505 kb on + strand, within IAI47_03675 at 766.506 kb on - strand, within IAI47_03675 at 766.506 kb on - strand, within IAI47_03675 at 766.506 kb on - strand, within IAI47_03675 at 766.506 kb on - strand, within IAI47_03675 at 766.514 kb on + strand, within IAI47_03675 at 766.515 kb on - strand, within IAI47_03675 at 766.545 kb on + strand at 766.546 kb on - strand at 766.552 kb on + strand at 766.553 kb on - strand at 766.595 kb on - strand at 766.595 kb on - strand at 766.622 kb on + strand at 766.623 kb on - strand at 766.633 kb on + strand at 766.634 kb on - strand at 766.634 kb on - strand at 766.641 kb on + strand at 766.641 kb on + strand at 766.677 kb on + strand at 766.677 kb on + strand at 766.690 kb on + strand at 766.691 kb on - strand at 766.691 kb on - strand at 766.692 kb on + strand at 766.692 kb on + strand at 766.692 kb on + strand at 766.692 kb on + strand at 766.693 kb on - strand at 766.693 kb on - strand at 766.693 kb on - strand at 766.693 kb on - strand at 766.693 kb on - strand at 766.693 kb on - strand at 766.715 kb on + strand at 766.764 kb on + strand at 766.773 kb on + strand at 766.773 kb on + strand at 766.773 kb on + strand at 766.773 kb on + strand at 766.773 kb on + strand at 766.774 kb on - strand at 766.774 kb on - strand at 766.774 kb on - strand at 766.795 kb on + strand at 766.795 kb on + strand at 766.795 kb on + strand at 766.795 kb on + strand at 766.869 kb on - strand at 766.901 kb on - strand at 766.930 kb on - strand at 766.933 kb on + strand at 766.933 kb on + strand at 766.933 kb on + strand at 766.934 kb on - strand at 766.934 kb on - strand at 766.934 kb on - strand at 766.934 kb on - strand at 767.005 kb on - strand at 767.077 kb on + strand at 767.103 kb on - strand, within IAI47_03680 at 767.195 kb on + strand, within IAI47_03680 at 767.195 kb on + strand, within IAI47_03680 at 767.195 kb on + strand, within IAI47_03680 at 767.196 kb on - strand, within IAI47_03680 at 767.196 kb on - strand, within IAI47_03680 at 767.201 kb on + strand, within IAI47_03680 at 767.201 kb on + strand, within IAI47_03680 at 767.202 kb on - strand, within IAI47_03680 at 767.202 kb on - strand, within IAI47_03680 at 767.322 kb on + strand, within IAI47_03680 at 767.323 kb on - strand, within IAI47_03680 at 767.323 kb on - strand, within IAI47_03680 at 767.323 kb on - strand, within IAI47_03680 at 767.336 kb on + strand, within IAI47_03680 at 767.336 kb on + strand, within IAI47_03680 at 767.336 kb on + strand, within IAI47_03680 at 767.336 kb on + strand, within IAI47_03680 at 767.336 kb on + strand, within IAI47_03680 at 767.337 kb on - strand, within IAI47_03680 at 767.337 kb on - strand, within IAI47_03680 at 767.337 kb on - strand, within IAI47_03680 at 767.337 kb on - strand, within IAI47_03680 at 767.337 kb on - strand, within IAI47_03680 at 767.337 kb on - strand, within IAI47_03680 at 767.337 kb on - strand, within IAI47_03680 at 767.337 kb on - strand, within IAI47_03680 at 767.337 kb on - strand, within IAI47_03680 at 767.371 kb on + strand, within IAI47_03680 at 767.371 kb on + strand, within IAI47_03680 at 767.371 kb on + strand, within IAI47_03680 at 767.372 kb on - strand, within IAI47_03680 at 767.372 kb on - strand, within IAI47_03680 at 767.432 kb on + strand, within IAI47_03680 at 767.432 kb on + strand, within IAI47_03680 at 767.433 kb on - strand, within IAI47_03680 at 767.433 kb on - strand, within IAI47_03680 at 767.433 kb on - strand, within IAI47_03680 at 767.433 kb on - strand, within IAI47_03680 at 767.433 kb on - strand, within IAI47_03680 at 767.446 kb on + strand, within IAI47_03680 at 767.447 kb on - strand, within IAI47_03680 at 767.447 kb on - strand, within IAI47_03680 at 767.511 kb on - strand, within IAI47_03680 at 767.511 kb on - strand, within IAI47_03680 at 767.535 kb on + strand, within IAI47_03680 at 767.536 kb on - strand, within IAI47_03680 at 767.563 kb on + strand, within IAI47_03680 at 767.564 kb on - strand, within IAI47_03680 at 767.564 kb on - strand, within IAI47_03680 at 767.564 kb on - strand, within IAI47_03680 at 767.743 kb on + strand, within IAI47_03680 at 767.759 kb on + strand, within IAI47_03680 at 767.759 kb on + strand, within IAI47_03680 at 767.759 kb on + strand, within IAI47_03680 at 767.759 kb on + strand, within IAI47_03680 at 767.760 kb on - strand, within IAI47_03680 at 767.760 kb on - strand, within IAI47_03680 at 767.829 kb on - strand, within IAI47_03680 at 767.829 kb on - strand, within IAI47_03680 at 767.864 kb on - strand, within IAI47_03680 at 767.893 kb on + strand, within IAI47_03680 at 767.893 kb on + strand, within IAI47_03680 at 767.893 kb on + strand, within IAI47_03680 at 767.894 kb on - strand, within IAI47_03680 at 767.894 kb on - strand, within IAI47_03680 at 767.962 kb on + strand, within IAI47_03680 at 767.963 kb on - strand, within IAI47_03680 at 767.963 kb on - strand, within IAI47_03680 at 768.011 kb on + strand, within IAI47_03680 at 768.011 kb on + strand, within IAI47_03680 at 768.052 kb on + strand, within IAI47_03680 at 768.053 kb on - strand, within IAI47_03680 at 768.067 kb on + strand, within IAI47_03680 at 768.068 kb on - strand, within IAI47_03680 at 768.098 kb on + strand, within IAI47_03680 at 768.098 kb on + strand, within IAI47_03680 at 768.098 kb on + strand, within IAI47_03680 at 768.098 kb on + strand, within IAI47_03680 at 768.098 kb on + strand, within IAI47_03680 at 768.098 kb on + strand, within IAI47_03680 at 768.098 kb on + strand, within IAI47_03680 at 768.098 kb on + strand, within IAI47_03680 at 768.098 kb on + strand, within IAI47_03680 at 768.098 kb on + strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.099 kb on - strand, within IAI47_03680 at 768.176 kb on + strand, within IAI47_03680 at 768.176 kb on + strand, within IAI47_03680 at 768.206 kb on + strand, within IAI47_03680 at 768.207 kb on - strand, within IAI47_03680 at 768.263 kb on + strand, within IAI47_03680 at 768.264 kb on - strand, within IAI47_03680 at 768.264 kb on - strand, within IAI47_03680 at 768.264 kb on - strand, within IAI47_03680 at 768.264 kb on - strand, within IAI47_03680 at 768.378 kb on + strand, within IAI47_03680 at 768.378 kb on + strand, within IAI47_03680 at 768.378 kb on + strand, within IAI47_03680 at 768.378 kb on + strand, within IAI47_03680 at 768.379 kb on - strand, within IAI47_03680 at 768.401 kb on + strand, within IAI47_03680 at 768.401 kb on + strand, within IAI47_03680 at 768.401 kb on + strand, within IAI47_03680 at 768.401 kb on + strand, within IAI47_03680 at 768.402 kb on - strand, within IAI47_03680 at 768.402 kb on - strand, within IAI47_03680 at 768.402 kb on - strand, within IAI47_03680 at 768.402 kb on - strand, within IAI47_03680 at 768.402 kb on - strand, within IAI47_03680 at 768.402 kb on - strand, within IAI47_03680 at 768.402 kb on - strand, within IAI47_03680 at 768.402 kb on - strand, within IAI47_03680 at 768.406 kb on + strand, within IAI47_03680 at 768.406 kb on + strand, within IAI47_03680 at 768.509 kb on + strand, within IAI47_03680 at 768.510 kb on - strand, within IAI47_03680 at 768.674 kb on + strand, within IAI47_03680 at 768.674 kb on + strand, within IAI47_03680 at 768.674 kb on + strand, within IAI47_03680 at 768.675 kb on - strand, within IAI47_03680 at 768.718 kb on + strand at 768.718 kb on + strand at 768.718 kb on + strand at 768.719 kb on - strand at 768.741 kb on - strand at 768.752 kb on + strand at 768.752 kb on + strand at 768.753 kb on - strand at 768.881 kb on + strand at 768.882 kb on - strand at 768.882 kb on - strand at 768.882 kb on - strand at 768.884 kb on + strand at 768.884 kb on + strand at 768.884 kb on + strand at 768.884 kb on + strand at 768.884 kb on + strand at 768.885 kb on - strand at 768.924 kb on + strand at 768.925 kb on - strand at 768.958 kb on + strand at 768.958 kb on + strand at 768.959 kb on - strand at 768.959 kb on - strand at 768.969 kb on + strand at 768.969 kb on + strand at 768.970 kb on - strand at 768.973 kb on - strand at 769.012 kb on + strand at 769.012 kb on + strand at 769.057 kb on + strand at 769.058 kb on - strand at 769.133 kb on + strand at 769.206 kb on - strand at 769.217 kb on + strand at 769.217 kb on + strand at 769.217 kb on + strand at 769.217 kb on + strand at 769.217 kb on + strand at 769.217 kb on + strand at 769.217 kb on + strand at 769.217 kb on + strand at 769.217 kb on + strand at 769.218 kb on - strand at 769.218 kb on - strand at 769.218 kb on - strand at 769.218 kb on - strand at 769.261 kb on + strand at 769.262 kb on - strand at 769.262 kb on - strand at 769.303 kb on - strand, within IAI47_03685 at 769.326 kb on + strand, within IAI47_03685 at 769.345 kb on + strand, within IAI47_03685 at 769.345 kb on + strand, within IAI47_03685 at 769.345 kb on + strand, within IAI47_03685 at 769.345 kb on + strand, within IAI47_03685 at 769.346 kb on - strand, within IAI47_03685 at 769.350 kb on + strand, within IAI47_03685 at 769.398 kb on + strand, within IAI47_03685 at 769.398 kb on + strand, within IAI47_03685 at 769.398 kb on + strand, within IAI47_03685 at 769.398 kb on + strand, within IAI47_03685 at 769.398 kb on + strand, within IAI47_03685 at 769.399 kb on - strand, within IAI47_03685 at 769.399 kb on - strand, within IAI47_03685 at 769.399 kb on - strand, within IAI47_03685 at 769.399 kb on - strand, within IAI47_03685 at 769.399 kb on - strand, within IAI47_03685 at 769.446 kb on - strand, within IAI47_03685 at 769.494 kb on + strand, within IAI47_03685 at 769.495 kb on - strand, within IAI47_03685 at 769.504 kb on + strand, within IAI47_03685 at 769.505 kb on - strand, within IAI47_03685 at 769.505 kb on - strand, within IAI47_03685 at 769.677 kb on + strand, within IAI47_03685 at 769.677 kb on + strand, within IAI47_03685 at 769.677 kb on + strand, within IAI47_03685 at 769.678 kb on - strand, within IAI47_03685 at 769.689 kb on + strand, within IAI47_03685 at 769.689 kb on + strand, within IAI47_03685 at 769.689 kb on + strand, within IAI47_03685 at 769.689 kb on + strand, within IAI47_03685 at 769.690 kb on - strand, within IAI47_03685 at 769.690 kb on - strand, within IAI47_03685 at 769.690 kb on - strand, within IAI47_03685 at 769.777 kb on + strand, within IAI47_03685 at 769.778 kb on - strand, within IAI47_03685 at 769.834 kb on - strand, within IAI47_03685
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 766,003 - IAI47_03675 0.19 +0.2 766,003 - IAI47_03675 0.19 +0.7 766,028 + IAI47_03675 0.22 -3.8 766,028 + IAI47_03675 0.22 -0.8 766,028 + IAI47_03675 0.22 +0.2 766,028 + IAI47_03675 0.22 -0.5 766,029 - IAI47_03675 0.22 -1.3 766,034 + IAI47_03675 0.23 +0.1 766,034 + IAI47_03675 0.23 -0.1 766,034 + IAI47_03675 0.23 -0.6 766,034 + IAI47_03675 0.23 -1.0 766,034 + IAI47_03675 0.23 +1.4 766,034 + IAI47_03675 0.23 -1.8 766,035 - IAI47_03675 0.23 +0.6 766,035 - IAI47_03675 0.23 +0.9 766,035 - IAI47_03675 0.23 +0.5 766,035 - IAI47_03675 0.23 +0.2 766,035 - IAI47_03675 0.23 -0.2 766,035 - IAI47_03675 0.23 +1.1 766,035 - IAI47_03675 0.23 +1.0 766,176 - IAI47_03675 0.42 -1.1 766,176 - IAI47_03675 0.42 -0.6 766,176 - IAI47_03675 0.42 +1.4 766,176 - IAI47_03675 0.42 -0.1 766,194 + IAI47_03675 0.44 -0.6 766,194 + IAI47_03675 0.44 -2.3 766,195 - IAI47_03675 0.44 +0.5 766,195 - IAI47_03675 0.44 +2.4 766,195 - IAI47_03675 0.44 +0.9 766,200 + IAI47_03675 0.45 +1.2 766,200 + IAI47_03675 0.45 -0.0 766,200 + IAI47_03675 0.45 +1.0 766,200 + IAI47_03675 0.45 -1.0 766,201 - IAI47_03675 0.45 +2.5 766,266 + IAI47_03675 0.54 -0.3 766,266 + IAI47_03675 0.54 -3.0 766,267 - IAI47_03675 0.54 +0.6 766,267 - IAI47_03675 0.54 +0.3 766,267 - IAI47_03675 0.54 +0.5 766,267 - IAI47_03675 0.54 +0.6 766,284 - IAI47_03675 0.56 -0.2 766,284 - IAI47_03675 0.56 -1.0 766,293 + IAI47_03675 0.57 +0.6 766,294 - IAI47_03675 0.57 +0.3 766,294 - IAI47_03675 0.57 -0.5 766,338 - IAI47_03675 0.63 +0.2 766,338 - IAI47_03675 0.63 -2.5 766,344 + IAI47_03675 0.64 -0.2 766,344 + IAI47_03675 0.64 -0.2 766,344 + IAI47_03675 0.64 -2.0 766,345 - IAI47_03675 0.64 +2.6 766,345 - IAI47_03675 0.64 -0.3 766,345 - IAI47_03675 0.64 -0.8 766,346 + IAI47_03675 0.64 +1.6 766,346 + IAI47_03675 0.64 -1.2 766,346 + IAI47_03675 0.64 +2.1 766,346 + IAI47_03675 0.64 -1.8 766,346 + IAI47_03675 0.64 +0.9 766,347 - IAI47_03675 0.64 -0.8 766,347 - IAI47_03675 0.64 -0.8 766,347 - IAI47_03675 0.64 -2.7 766,347 - IAI47_03675 0.64 -0.9 766,347 - IAI47_03675 0.64 -0.4 766,368 + IAI47_03675 0.67 -1.0 766,368 + IAI47_03675 0.67 +0.3 766,368 + IAI47_03675 0.67 +0.7 766,368 + IAI47_03675 0.67 +0.5 766,368 + IAI47_03675 0.67 -1.5 766,369 - IAI47_03675 0.67 -0.5 766,369 - IAI47_03675 0.67 -0.6 766,369 - IAI47_03675 0.67 -0.4 766,369 - IAI47_03675 0.67 +0.7 766,369 - IAI47_03675 0.67 -0.4 766,371 + IAI47_03675 0.67 +0.1 766,371 + IAI47_03675 0.67 -0.0 766,372 - IAI47_03675 0.68 +0.5 766,372 - IAI47_03675 0.68 +0.8 766,396 - IAI47_03675 0.71 -2.1 766,396 - IAI47_03675 0.71 +1.4 766,396 - IAI47_03675 0.71 -0.3 766,412 + IAI47_03675 0.73 -1.4 766,412 + IAI47_03675 0.73 -1.4 766,413 - IAI47_03675 0.73 -0.1 766,440 + IAI47_03675 0.77 +0.6 766,440 + IAI47_03675 0.77 +0.3 766,440 + IAI47_03675 0.77 +0.3 766,440 + IAI47_03675 0.77 -0.6 766,441 - IAI47_03675 0.77 -1.0 766,441 - IAI47_03675 0.77 +1.1 766,467 + IAI47_03675 0.80 +1.8 766,468 - IAI47_03675 0.80 -0.0 766,483 + IAI47_03675 0.82 +0.7 766,483 + IAI47_03675 0.82 -0.1 766,484 - 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Or see this region's nucleotide sequence