Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18670

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18665 and CSW01_18670 are separated by 158 nucleotidesCSW01_18670 and CSW01_18675 are separated by 140 nucleotides CSW01_18665: CSW01_18665 - permease, at 856,342 to 857,694 _18665 CSW01_18670: CSW01_18670 - CdaR family transcriptional regulator, at 857,853 to 858,992 _18670 CSW01_18675: CSW01_18675 - methyl-accepting chemotaxis protein, at 859,133 to 860,869 _18675 Position (kb) 857 858 859Strain fitness (log2 ratio) -2 -1 0 1 2 3at 856.867 kb on - strand, within CSW01_18665at 856.902 kb on + strand, within CSW01_18665at 856.961 kb on - strand, within CSW01_18665at 857.013 kb on - strand, within CSW01_18665at 857.039 kb on - strand, within CSW01_18665at 857.040 kb on - strand, within CSW01_18665at 857.121 kb on - strand, within CSW01_18665at 857.121 kb on - strand, within CSW01_18665at 857.159 kb on - strand, within CSW01_18665at 857.214 kb on + strand, within CSW01_18665at 857.244 kb on - strand, within CSW01_18665at 857.256 kb on - strand, within CSW01_18665at 857.273 kb on + strand, within CSW01_18665at 857.283 kb on + strand, within CSW01_18665at 857.451 kb on - strand, within CSW01_18665at 857.527 kb on + strand, within CSW01_18665at 857.535 kb on - strand, within CSW01_18665at 857.622 kb on + strandat 857.627 kb on + strandat 857.627 kb on + strandat 857.635 kb on - strandat 857.652 kb on - strandat 857.676 kb on + strandat 857.827 kb on + strandat 857.837 kb on + strandat 857.958 kb on - strandat 858.052 kb on + strand, within CSW01_18670at 858.052 kb on + strand, within CSW01_18670at 858.052 kb on + strand, within CSW01_18670at 858.052 kb on + strand, within CSW01_18670at 858.052 kb on + strand, within CSW01_18670at 858.052 kb on + strand, within CSW01_18670at 858.052 kb on + strand, within CSW01_18670at 858.052 kb on + strand, within CSW01_18670at 858.060 kb on - strand, within CSW01_18670at 858.060 kb on - strand, within CSW01_18670at 858.060 kb on - strand, within CSW01_18670at 858.060 kb on - strand, within CSW01_18670at 858.060 kb on - strand, within CSW01_18670at 858.060 kb on - strand, within CSW01_18670at 858.109 kb on + strand, within CSW01_18670at 858.188 kb on + strand, within CSW01_18670at 858.201 kb on - strand, within CSW01_18670at 858.278 kb on - strand, within CSW01_18670at 858.292 kb on + strand, within CSW01_18670at 858.350 kb on + strand, within CSW01_18670at 858.350 kb on + strand, within CSW01_18670at 858.350 kb on + strand, within CSW01_18670at 858.356 kb on + strand, within CSW01_18670at 858.375 kb on - strand, within CSW01_18670at 858.458 kb on + strand, within CSW01_18670at 858.498 kb on + strand, within CSW01_18670at 858.508 kb on - strand, within CSW01_18670at 858.523 kb on - strand, within CSW01_18670at 858.523 kb on - strand, within CSW01_18670at 858.574 kb on + strand, within CSW01_18670at 858.631 kb on + strand, within CSW01_18670at 858.644 kb on - strand, within CSW01_18670at 858.644 kb on - strand, within CSW01_18670at 858.733 kb on - strand, within CSW01_18670at 858.776 kb on + strand, within CSW01_18670at 858.776 kb on + strand, within CSW01_18670at 858.785 kb on - strand, within CSW01_18670at 858.786 kb on + strand, within CSW01_18670at 858.816 kb on - strand, within CSW01_18670at 858.897 kb on - strandat 858.981 kb on + strandat 858.989 kb on - strandat 859.001 kb on + strandat 859.021 kb on - strandat 859.062 kb on + strandat 859.137 kb on + strandat 859.145 kb on - strandat 859.251 kb on + strandat 859.251 kb on + strandat 859.251 kb on + strandat 859.259 kb on - strandat 859.354 kb on - strand, within CSW01_18675at 859.354 kb on - strand, within CSW01_18675at 859.459 kb on + strand, within CSW01_18675at 859.467 kb on - strand, within CSW01_18675at 859.467 kb on - strand, within CSW01_18675at 859.467 kb on - strand, within CSW01_18675at 859.617 kb on - strand, within CSW01_18675at 859.795 kb on - strand, within CSW01_18675at 859.806 kb on - strand, within CSW01_18675at 859.870 kb on - strand, within CSW01_18675at 859.921 kb on - strand, within CSW01_18675at 859.978 kb on + strand, within CSW01_18675at 859.978 kb on + strand, within CSW01_18675at 859.988 kb on + strand, within CSW01_18675at 859.988 kb on + strand, within CSW01_18675

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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856,867 - CSW01_18665 0.39 +0.3
856,902 + CSW01_18665 0.41 +0.2
856,961 - CSW01_18665 0.46 +2.9
857,013 - CSW01_18665 0.50 -0.6
857,039 - CSW01_18665 0.52 +0.3
857,040 - CSW01_18665 0.52 -0.5
857,121 - CSW01_18665 0.58 +0.3
857,121 - CSW01_18665 0.58 -0.1
857,159 - CSW01_18665 0.60 -0.2
857,214 + CSW01_18665 0.64 +0.2
857,244 - CSW01_18665 0.67 +0.5
857,256 - CSW01_18665 0.68 +0.1
857,273 + CSW01_18665 0.69 -0.1
857,283 + CSW01_18665 0.70 +0.5
857,451 - CSW01_18665 0.82 +0.1
857,527 + CSW01_18665 0.88 +0.3
857,535 - CSW01_18665 0.88 -0.4
857,622 + +0.5
857,627 + +1.8
857,627 + -0.1
857,635 - -0.5
857,652 - +0.3
857,676 + -2.6
857,827 + +0.4
857,837 + +0.4
857,958 - +3.2
858,052 + CSW01_18670 0.17 +1.4
858,052 + CSW01_18670 0.17 -0.3
858,052 + CSW01_18670 0.17 -0.0
858,052 + CSW01_18670 0.17 +0.1
858,052 + CSW01_18670 0.17 +0.3
858,052 + CSW01_18670 0.17 -0.8
858,052 + CSW01_18670 0.17 +1.1
858,052 + CSW01_18670 0.17 -1.4
858,060 - CSW01_18670 0.18 -0.4
858,060 - CSW01_18670 0.18 +0.1
858,060 - CSW01_18670 0.18 +0.5
858,060 - CSW01_18670 0.18 -0.1
858,060 - CSW01_18670 0.18 -0.9
858,060 - CSW01_18670 0.18 +0.2
858,109 + CSW01_18670 0.22 +1.1
858,188 + CSW01_18670 0.29 -0.2
858,201 - CSW01_18670 0.31 +0.5
858,278 - CSW01_18670 0.37 +0.8
858,292 + CSW01_18670 0.39 +0.3
858,350 + CSW01_18670 0.44 -0.5
858,350 + CSW01_18670 0.44 -0.5
858,350 + CSW01_18670 0.44 +0.5
858,356 + CSW01_18670 0.44 +0.4
858,375 - CSW01_18670 0.46 +0.4
858,458 + CSW01_18670 0.53 +0.2
858,498 + CSW01_18670 0.57 +0.6
858,508 - CSW01_18670 0.57 +0.3
858,523 - CSW01_18670 0.59 +0.7
858,523 - CSW01_18670 0.59 +0.1
858,574 + CSW01_18670 0.63 -0.2
858,631 + CSW01_18670 0.68 -0.3
858,644 - CSW01_18670 0.69 +0.6
858,644 - CSW01_18670 0.69 -1.2
858,733 - CSW01_18670 0.77 +0.3
858,776 + CSW01_18670 0.81 +0.3
858,776 + CSW01_18670 0.81 -0.4
858,785 - CSW01_18670 0.82 +0.9
858,786 + CSW01_18670 0.82 +0.2
858,816 - CSW01_18670 0.84 +0.5
858,897 - +1.4
858,981 + -0.1
858,989 - +0.1
859,001 + +1.3
859,021 - +0.5
859,062 + -1.0
859,137 + -0.3
859,145 - -0.2
859,251 + -0.6
859,251 + -0.3
859,251 + +2.4
859,259 - -1.0
859,354 - CSW01_18675 0.13 -1.7
859,354 - CSW01_18675 0.13 +0.4
859,459 + CSW01_18675 0.19 -1.1
859,467 - CSW01_18675 0.19 +0.8
859,467 - CSW01_18675 0.19 +2.1
859,467 - CSW01_18675 0.19 +0.9
859,617 - CSW01_18675 0.28 -0.8
859,795 - CSW01_18675 0.38 +0.5
859,806 - CSW01_18675 0.39 -0.5
859,870 - CSW01_18675 0.42 +1.7
859,921 - CSW01_18675 0.45 -0.3
859,978 + CSW01_18675 0.49 -0.5
859,978 + CSW01_18675 0.49 +0.1
859,988 + CSW01_18675 0.49 -0.2
859,988 + CSW01_18675 0.49 -0.2

Or see this region's nucleotide sequence