Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18625 and CSW01_18630 overlap by 4 nucleotides CSW01_18630 and CSW01_18635 are separated by 13 nucleotides CSW01_18635 and CSW01_18640 are separated by 155 nucleotides CSW01_18640 and CSW01_18645 are separated by 267 nucleotides
CSW01_18625: CSW01_18625 - glucose-6-phosphate dehydrogenase, at 848,407 to 849,912
_18625
CSW01_18630: CSW01_18630 - 6-phosphogluconolactonase, at 849,909 to 850,625
_18630
CSW01_18635: CSW01_18635 - phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating), at 850,639 to 852,087
_18635
CSW01_18640: CSW01_18640 - hypothetical protein, at 852,243 to 852,380
_18640
CSW01_18645: CSW01_18645 - MBL fold metallo-hydrolase, at 852,648 to 853,562
_18645
Position (kb) 850
851
852
853 Strain fitness (log2 ratio) -2
-1
0
1
2 at 849.640 kb on + strand, within CSW01_18625 at 849.656 kb on - strand, within CSW01_18625 at 849.656 kb on - strand, within CSW01_18625 at 849.709 kb on + strand, within CSW01_18625 at 849.717 kb on - strand, within CSW01_18625 at 849.717 kb on - strand, within CSW01_18625 at 849.720 kb on + strand, within CSW01_18625 at 849.982 kb on - strand, within CSW01_18630 at 850.061 kb on + strand, within CSW01_18630 at 850.118 kb on - strand, within CSW01_18630 at 850.120 kb on + strand, within CSW01_18630 at 850.126 kb on - strand, within CSW01_18630 at 850.235 kb on + strand, within CSW01_18630 at 850.309 kb on + strand, within CSW01_18630 at 850.335 kb on - strand, within CSW01_18630 at 850.344 kb on + strand, within CSW01_18630 at 850.498 kb on - strand, within CSW01_18630 at 850.544 kb on - strand, within CSW01_18630 at 850.570 kb on + strand at 850.578 kb on - strand at 850.604 kb on - strand at 850.653 kb on - strand at 850.731 kb on + strand at 850.734 kb on - strand at 850.807 kb on + strand, within CSW01_18635 at 850.875 kb on - strand, within CSW01_18635 at 851.028 kb on + strand, within CSW01_18635 at 851.074 kb on + strand, within CSW01_18635 at 851.144 kb on + strand, within CSW01_18635 at 851.147 kb on - strand, within CSW01_18635 at 851.178 kb on - strand, within CSW01_18635 at 851.209 kb on - strand, within CSW01_18635 at 851.223 kb on + strand, within CSW01_18635 at 851.314 kb on + strand, within CSW01_18635 at 851.609 kb on - strand, within CSW01_18635 at 851.645 kb on + strand, within CSW01_18635 at 851.645 kb on + strand, within CSW01_18635 at 851.653 kb on - strand, within CSW01_18635 at 851.658 kb on + strand, within CSW01_18635 at 851.715 kb on - strand, within CSW01_18635 at 851.801 kb on + strand, within CSW01_18635 at 851.868 kb on + strand, within CSW01_18635 at 851.998 kb on - strand at 852.035 kb on - strand at 852.054 kb on + strand at 852.297 kb on + strand, within CSW01_18640 at 852.445 kb on + strand at 852.517 kb on - strand at 852.542 kb on + strand at 852.542 kb on + strand at 852.542 kb on + strand at 852.542 kb on + strand at 852.550 kb on - strand at 852.550 kb on - strand at 852.560 kb on - strand at 852.633 kb on + strand at 852.729 kb on + strand at 852.737 kb on - strand at 852.737 kb on - strand at 852.749 kb on + strand, within CSW01_18645 at 852.749 kb on + strand, within CSW01_18645 at 852.752 kb on - strand, within CSW01_18645 at 852.757 kb on - strand, within CSW01_18645 at 852.757 kb on - strand, within CSW01_18645 at 852.770 kb on + strand, within CSW01_18645 at 852.782 kb on + strand, within CSW01_18645 at 852.790 kb on - strand, within CSW01_18645 at 852.871 kb on + strand, within CSW01_18645 at 852.890 kb on - strand, within CSW01_18645
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A remove 849,640 + CSW01_18625 0.82 +1.0 849,656 - CSW01_18625 0.83 +0.4 849,656 - CSW01_18625 0.83 +0.4 849,709 + CSW01_18625 0.86 -0.0 849,717 - CSW01_18625 0.87 +0.1 849,717 - CSW01_18625 0.87 +0.3 849,720 + CSW01_18625 0.87 -1.1 849,982 - CSW01_18630 0.10 +0.0 850,061 + CSW01_18630 0.21 -0.2 850,118 - CSW01_18630 0.29 -0.6 850,120 + CSW01_18630 0.29 -1.5 850,126 - CSW01_18630 0.30 -0.6 850,235 + CSW01_18630 0.45 -2.1 850,309 + CSW01_18630 0.56 +0.9 850,335 - CSW01_18630 0.59 -0.3 850,344 + CSW01_18630 0.61 -0.2 850,498 - CSW01_18630 0.82 +0.3 850,544 - CSW01_18630 0.89 +0.4 850,570 + +0.2 850,578 - -0.4 850,604 - -0.6 850,653 - -1.9 850,731 + -0.2 850,734 - -1.8 850,807 + CSW01_18635 0.12 -0.3 850,875 - CSW01_18635 0.16 +0.1 851,028 + CSW01_18635 0.27 +0.7 851,074 + CSW01_18635 0.30 -1.9 851,144 + CSW01_18635 0.35 +0.7 851,147 - CSW01_18635 0.35 +0.5 851,178 - CSW01_18635 0.37 -0.5 851,209 - CSW01_18635 0.39 -0.1 851,223 + CSW01_18635 0.40 +1.5 851,314 + CSW01_18635 0.47 -1.1 851,609 - CSW01_18635 0.67 +1.1 851,645 + CSW01_18635 0.69 -0.6 851,645 + CSW01_18635 0.69 -0.6 851,653 - CSW01_18635 0.70 +0.8 851,658 + CSW01_18635 0.70 -0.3 851,715 - CSW01_18635 0.74 +1.8 851,801 + CSW01_18635 0.80 +0.7 851,868 + CSW01_18635 0.85 +0.9 851,998 - -0.9 852,035 - -1.7 852,054 + -0.4 852,297 + CSW01_18640 0.39 +0.5 852,445 + -0.9 852,517 - +1.5 852,542 + -0.2 852,542 + -0.5 852,542 + -0.2 852,542 + +0.7 852,550 - -1.8 852,550 - -0.7 852,560 - +1.2 852,633 + +0.1 852,729 + +0.1 852,737 - -0.0 852,737 - -0.4 852,749 + CSW01_18645 0.11 -0.2 852,749 + CSW01_18645 0.11 -0.1 852,752 - CSW01_18645 0.11 -0.4 852,757 - CSW01_18645 0.12 +0.3 852,757 - CSW01_18645 0.12 -0.3 852,770 + CSW01_18645 0.13 +1.1 852,782 + CSW01_18645 0.15 -1.2 852,790 - CSW01_18645 0.16 +0.0 852,871 + CSW01_18645 0.24 +0.7 852,890 - CSW01_18645 0.26 +0.2
Or see this region's nucleotide sequence