Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18125

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_18115 and CSW01_18120 are separated by 235 nucleotidesCSW01_18120 and CSW01_18125 are separated by 173 nucleotidesCSW01_18125 and CSW01_18130 overlap by 8 nucleotides CSW01_18115: CSW01_18115 - molecular chaperone DnaJ, at 730,956 to 731,585 _18115 CSW01_18120: CSW01_18120 - DUF2238 domain-containing protein, at 731,821 to 732,408 _18120 CSW01_18125: CSW01_18125 - integrase, at 732,582 to 733,961 _18125 CSW01_18130: CSW01_18130 - IS3 family transposase, at 733,954 to 735,131 _18130 Position (kb) 732 733 734Strain fitness (log2 ratio) -2 -1 0 1at 731.745 kb on + strandat 731.796 kb on - strandat 731.826 kb on - strandat 731.983 kb on - strand, within CSW01_18120at 732.006 kb on - strand, within CSW01_18120at 732.103 kb on + strand, within CSW01_18120at 732.107 kb on - strand, within CSW01_18120at 732.196 kb on + strand, within CSW01_18120at 732.196 kb on + strand, within CSW01_18120at 732.204 kb on - strand, within CSW01_18120at 732.258 kb on + strand, within CSW01_18120at 732.345 kb on - strand, within CSW01_18120at 732.403 kb on + strandat 732.420 kb on + strandat 732.722 kb on + strand, within CSW01_18125at 732.853 kb on + strand, within CSW01_18125at 732.853 kb on + strand, within CSW01_18125at 732.896 kb on + strand, within CSW01_18125at 732.896 kb on + strand, within CSW01_18125at 732.917 kb on + strand, within CSW01_18125at 732.917 kb on + strand, within CSW01_18125at 732.924 kb on + strand, within CSW01_18125at 733.001 kb on + strand, within CSW01_18125at 733.009 kb on - strand, within CSW01_18125at 733.203 kb on + strand, within CSW01_18125at 733.203 kb on + strand, within CSW01_18125at 733.211 kb on - strand, within CSW01_18125at 733.238 kb on - strand, within CSW01_18125at 733.254 kb on - strand, within CSW01_18125at 733.286 kb on + strand, within CSW01_18125at 733.291 kb on - strand, within CSW01_18125at 733.317 kb on - strand, within CSW01_18125at 733.361 kb on + strand, within CSW01_18125at 733.363 kb on - strand, within CSW01_18125at 733.369 kb on + strand, within CSW01_18125at 733.419 kb on + strand, within CSW01_18125at 733.426 kb on - strand, within CSW01_18125at 733.433 kb on + strand, within CSW01_18125at 733.436 kb on - strand, within CSW01_18125at 733.441 kb on - strand, within CSW01_18125at 733.443 kb on + strand, within CSW01_18125at 733.451 kb on - strand, within CSW01_18125at 733.451 kb on - strand, within CSW01_18125at 733.509 kb on - strand, within CSW01_18125at 733.515 kb on + strand, within CSW01_18125at 733.529 kb on + strand, within CSW01_18125at 733.556 kb on + strand, within CSW01_18125at 733.574 kb on + strand, within CSW01_18125at 733.574 kb on + strand, within CSW01_18125at 733.679 kb on - strand, within CSW01_18125at 733.709 kb on + strand, within CSW01_18125at 733.717 kb on + strand, within CSW01_18125at 733.725 kb on - strand, within CSW01_18125at 733.760 kb on - strand, within CSW01_18125at 733.821 kb on + strand, within CSW01_18125at 733.843 kb on + strandat 733.879 kb on + strandat 733.879 kb on + strandat 733.937 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
remove
731,745 + +0.5
731,796 - -1.1
731,826 - +1.0
731,983 - CSW01_18120 0.28 +0.4
732,006 - CSW01_18120 0.31 -0.1
732,103 + CSW01_18120 0.48 -0.2
732,107 - CSW01_18120 0.49 -0.7
732,196 + CSW01_18120 0.64 +1.2
732,196 + CSW01_18120 0.64 +0.0
732,204 - CSW01_18120 0.65 -1.0
732,258 + CSW01_18120 0.74 -0.2
732,345 - CSW01_18120 0.89 -0.3
732,403 + +0.2
732,420 + -0.3
732,722 + CSW01_18125 0.10 -1.5
732,853 + CSW01_18125 0.20 -1.1
732,853 + CSW01_18125 0.20 +0.1
732,896 + CSW01_18125 0.23 +0.1
732,896 + CSW01_18125 0.23 -0.3
732,917 + CSW01_18125 0.24 +0.0
732,917 + CSW01_18125 0.24 +0.1
732,924 + CSW01_18125 0.25 -0.3
733,001 + CSW01_18125 0.30 +0.3
733,009 - CSW01_18125 0.31 -0.8
733,203 + CSW01_18125 0.45 -1.2
733,203 + CSW01_18125 0.45 -2.0
733,211 - CSW01_18125 0.46 +0.1
733,238 - CSW01_18125 0.48 -0.6
733,254 - CSW01_18125 0.49 -0.3
733,286 + CSW01_18125 0.51 -0.2
733,291 - CSW01_18125 0.51 +0.5
733,317 - CSW01_18125 0.53 -0.1
733,361 + CSW01_18125 0.56 -0.3
733,363 - CSW01_18125 0.57 -1.2
733,369 + CSW01_18125 0.57 +0.2
733,419 + CSW01_18125 0.61 -1.7
733,426 - CSW01_18125 0.61 +0.3
733,433 + CSW01_18125 0.62 +1.6
733,436 - CSW01_18125 0.62 -0.7
733,441 - CSW01_18125 0.62 -0.1
733,443 + CSW01_18125 0.62 +0.8
733,451 - CSW01_18125 0.63 -0.1
733,451 - CSW01_18125 0.63 -0.1
733,509 - CSW01_18125 0.67 -0.1
733,515 + CSW01_18125 0.68 +0.3
733,529 + CSW01_18125 0.69 +0.6
733,556 + CSW01_18125 0.71 -0.4
733,574 + CSW01_18125 0.72 -0.3
733,574 + CSW01_18125 0.72 -0.6
733,679 - CSW01_18125 0.79 -0.9
733,709 + CSW01_18125 0.82 -0.4
733,717 + CSW01_18125 0.82 +0.1
733,725 - CSW01_18125 0.83 -1.0
733,760 - CSW01_18125 0.85 -0.4
733,821 + CSW01_18125 0.90 -0.4
733,843 + +1.2
733,879 + +0.2
733,879 + -0.6
733,937 + -0.4

Or see this region's nucleotide sequence