Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17775 and CSW01_17780 are separated by 277 nucleotides CSW01_17780 and CSW01_17785 are separated by 56 nucleotides CSW01_17785 and CSW01_17790 are separated by 29 nucleotides CSW01_17790 and CSW01_17795 are separated by 98 nucleotides
CSW01_17775: CSW01_17775 - guanylate cyclase, at 663,320 to 663,895
_17775
CSW01_17780: CSW01_17780 - hypothetical protein, at 664,173 to 664,334
_17780
CSW01_17785: CSW01_17785 - hypothetical protein, at 664,391 to 664,681
_17785
CSW01_17790: CSW01_17790 - 3-hydroxy-3-methylglutaryl-CoA reductase, at 664,711 to 666,021
_17790
CSW01_17795: CSW01_17795 - molybdenum import ATP-binding protein ModC, at 666,120 to 667,220
_17795
Position (kb) 664
665
666
667 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 663.750 kb on + strand, within CSW01_17775 at 663.753 kb on - strand, within CSW01_17775 at 663.758 kb on - strand, within CSW01_17775 at 663.768 kb on - strand, within CSW01_17775 at 663.978 kb on - strand at 663.983 kb on - strand at 664.060 kb on + strand at 664.100 kb on + strand at 664.108 kb on - strand at 664.123 kb on + strand at 664.292 kb on - strand, within CSW01_17780 at 664.294 kb on + strand, within CSW01_17780 at 664.389 kb on - strand at 664.389 kb on - strand at 664.435 kb on - strand, within CSW01_17785 at 664.435 kb on - strand, within CSW01_17785 at 664.525 kb on + strand, within CSW01_17785 at 664.567 kb on + strand, within CSW01_17785 at 664.569 kb on + strand, within CSW01_17785 at 664.748 kb on + strand at 664.874 kb on + strand, within CSW01_17790 at 664.886 kb on + strand, within CSW01_17790 at 664.886 kb on + strand, within CSW01_17790 at 664.886 kb on + strand, within CSW01_17790 at 664.894 kb on - strand, within CSW01_17790 at 664.894 kb on - strand, within CSW01_17790 at 664.956 kb on + strand, within CSW01_17790 at 665.024 kb on - strand, within CSW01_17790 at 665.129 kb on + strand, within CSW01_17790 at 665.154 kb on + strand, within CSW01_17790 at 665.299 kb on - strand, within CSW01_17790 at 665.301 kb on + strand, within CSW01_17790 at 665.309 kb on - strand, within CSW01_17790 at 665.309 kb on - strand, within CSW01_17790 at 665.309 kb on - strand, within CSW01_17790 at 665.470 kb on + strand, within CSW01_17790 at 665.519 kb on + strand, within CSW01_17790 at 665.614 kb on - strand, within CSW01_17790 at 665.614 kb on - strand, within CSW01_17790 at 665.698 kb on - strand, within CSW01_17790 at 665.804 kb on + strand, within CSW01_17790 at 665.812 kb on - strand, within CSW01_17790 at 665.814 kb on + strand, within CSW01_17790 at 665.873 kb on + strand, within CSW01_17790 at 665.914 kb on + strand at 665.940 kb on + strand at 666.003 kb on + strand at 666.011 kb on - strand at 666.030 kb on - strand at 666.030 kb on - strand at 666.095 kb on - strand at 666.146 kb on + strand at 666.408 kb on + strand, within CSW01_17795 at 666.513 kb on - strand, within CSW01_17795 at 666.581 kb on + strand, within CSW01_17795 at 666.581 kb on + strand, within CSW01_17795 at 666.581 kb on + strand, within CSW01_17795 at 666.581 kb on + strand, within CSW01_17795 at 666.595 kb on + strand, within CSW01_17795 at 666.596 kb on - strand, within CSW01_17795 at 666.596 kb on - strand, within CSW01_17795 at 666.613 kb on - strand, within CSW01_17795 at 666.747 kb on - strand, within CSW01_17795 at 666.948 kb on - strand, within CSW01_17795 at 666.949 kb on + strand, within CSW01_17795 at 666.954 kb on + strand, within CSW01_17795 at 666.992 kb on + strand, within CSW01_17795
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A remove 663,750 + CSW01_17775 0.75 +0.1 663,753 - CSW01_17775 0.75 -1.1 663,758 - CSW01_17775 0.76 +0.0 663,768 - CSW01_17775 0.78 -1.0 663,978 - +1.0 663,983 - -0.5 664,060 + -1.2 664,100 + -0.1 664,108 - -0.1 664,123 + +0.2 664,292 - CSW01_17780 0.73 -1.5 664,294 + CSW01_17780 0.75 -0.5 664,389 - +0.4 664,389 - -0.1 664,435 - CSW01_17785 0.15 +0.4 664,435 - CSW01_17785 0.15 +0.4 664,525 + CSW01_17785 0.46 -0.8 664,567 + CSW01_17785 0.60 +0.7 664,569 + CSW01_17785 0.61 +0.2 664,748 + -0.3 664,874 + CSW01_17790 0.12 +4.5 664,886 + CSW01_17790 0.13 +0.6 664,886 + CSW01_17790 0.13 +0.3 664,886 + CSW01_17790 0.13 -0.6 664,894 - CSW01_17790 0.14 +0.7 664,894 - CSW01_17790 0.14 +0.6 664,956 + CSW01_17790 0.19 -0.0 665,024 - CSW01_17790 0.24 +0.9 665,129 + CSW01_17790 0.32 +1.5 665,154 + CSW01_17790 0.34 -0.3 665,299 - CSW01_17790 0.45 -1.2 665,301 + CSW01_17790 0.45 -0.2 665,309 - CSW01_17790 0.46 +0.2 665,309 - CSW01_17790 0.46 -0.2 665,309 - CSW01_17790 0.46 +0.8 665,470 + CSW01_17790 0.58 -0.2 665,519 + CSW01_17790 0.62 -0.1 665,614 - CSW01_17790 0.69 +0.1 665,614 - CSW01_17790 0.69 -0.4 665,698 - CSW01_17790 0.75 +2.2 665,804 + CSW01_17790 0.83 +0.6 665,812 - CSW01_17790 0.84 +1.2 665,814 + CSW01_17790 0.84 -0.1 665,873 + CSW01_17790 0.89 -1.5 665,914 + +0.8 665,940 + -0.3 666,003 + +0.1 666,011 - -1.3 666,030 - +2.2 666,030 - +1.0 666,095 - +0.3 666,146 + +0.3 666,408 + CSW01_17795 0.26 -0.4 666,513 - CSW01_17795 0.36 +1.2 666,581 + CSW01_17795 0.42 +0.9 666,581 + CSW01_17795 0.42 +2.0 666,581 + CSW01_17795 0.42 +0.4 666,581 + CSW01_17795 0.42 +1.0 666,595 + CSW01_17795 0.43 +1.3 666,596 - CSW01_17795 0.43 -2.6 666,596 - CSW01_17795 0.43 +0.1 666,613 - CSW01_17795 0.45 -0.1 666,747 - CSW01_17795 0.57 +0.4 666,948 - CSW01_17795 0.75 -0.3 666,949 + CSW01_17795 0.75 -0.2 666,954 + CSW01_17795 0.76 -2.3 666,992 + CSW01_17795 0.79 -0.1
Or see this region's nucleotide sequence