Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17600

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17585 and CSW01_17590 are separated by 17 nucleotidesCSW01_17590 and CSW01_17595 are separated by 11 nucleotidesCSW01_17595 and CSW01_17600 are separated by 43 nucleotidesCSW01_17600 and CSW01_17605 are separated by 158 nucleotidesCSW01_17605 and CSW01_17610 are separated by 2 nucleotides CSW01_17585: CSW01_17585 - periplasmic nitrate reductase electron transfer subunit, at 613,293 to 613,748 _17585 CSW01_17590: CSW01_17590 - cytochrome C, at 613,766 to 614,341 _17590 CSW01_17595: CSW01_17595 - TIGR02808 family protein, at 614,353 to 614,481 _17595 CSW01_17600: CSW01_17600 - HDIG domain-containing protein, at 614,525 to 615,820 _17600 CSW01_17605: CSW01_17605 - DNA-binding response regulator, at 615,979 to 616,605 _17605 CSW01_17610: CSW01_17610 - signal transduction histidine-protein kinase/phosphatase UhpB, at 616,608 to 618,191 _17610 Position (kb) 614 615 616Strain fitness (log2 ratio) -2 -1 0 1at 613.611 kb on - strand, within CSW01_17585at 613.944 kb on + strand, within CSW01_17590at 613.974 kb on + strand, within CSW01_17590at 614.045 kb on + strand, within CSW01_17590at 614.208 kb on + strand, within CSW01_17590at 614.208 kb on + strand, within CSW01_17590at 614.208 kb on + strand, within CSW01_17590at 614.216 kb on - strand, within CSW01_17590at 614.223 kb on + strand, within CSW01_17590at 614.226 kb on - strand, within CSW01_17590at 614.324 kb on + strandat 614.382 kb on + strand, within CSW01_17595at 614.553 kb on + strandat 614.553 kb on + strandat 614.553 kb on + strandat 614.561 kb on - strandat 614.561 kb on - strandat 614.561 kb on - strandat 614.696 kb on - strand, within CSW01_17600at 614.881 kb on - strand, within CSW01_17600at 614.929 kb on + strand, within CSW01_17600at 614.929 kb on + strand, within CSW01_17600at 614.929 kb on + strand, within CSW01_17600at 614.937 kb on - strand, within CSW01_17600at 614.937 kb on - strand, within CSW01_17600at 614.937 kb on - strand, within CSW01_17600at 614.937 kb on - strand, within CSW01_17600at 614.945 kb on - strand, within CSW01_17600at 615.004 kb on + strand, within CSW01_17600at 615.031 kb on - strand, within CSW01_17600at 615.135 kb on - strand, within CSW01_17600at 615.214 kb on + strand, within CSW01_17600at 615.224 kb on + strand, within CSW01_17600at 615.248 kb on - strand, within CSW01_17600at 615.360 kb on - strand, within CSW01_17600at 615.365 kb on - strand, within CSW01_17600at 615.512 kb on + strand, within CSW01_17600at 615.586 kb on - strand, within CSW01_17600at 615.602 kb on + strand, within CSW01_17600at 615.602 kb on + strand, within CSW01_17600at 615.611 kb on - strand, within CSW01_17600at 615.666 kb on + strand, within CSW01_17600at 615.714 kb on - strandat 615.800 kb on + strandat 615.808 kb on - strandat 615.808 kb on - strandat 615.853 kb on + strandat 615.861 kb on - strandat 615.861 kb on - strandat 615.875 kb on + strandat 615.893 kb on + strandat 615.997 kb on + strandat 616.028 kb on + strandat 616.038 kb on + strandat 616.038 kb on + strandat 616.061 kb on - strand, within CSW01_17605at 616.095 kb on + strand, within CSW01_17605at 616.105 kb on - strand, within CSW01_17605at 616.268 kb on - strand, within CSW01_17605at 616.424 kb on + strand, within CSW01_17605at 616.483 kb on + strand, within CSW01_17605at 616.535 kb on + strand, within CSW01_17605at 616.535 kb on + strand, within CSW01_17605at 616.568 kb on + strandat 616.573 kb on + strandat 616.643 kb on + strandat 616.651 kb on + strandat 616.654 kb on - strandat 616.659 kb on - strandat 616.731 kb on + strandat 616.731 kb on + strandat 616.731 kb on + strandat 616.739 kb on - strandat 616.809 kb on + strand, within CSW01_17610

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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613,611 - CSW01_17585 0.70 +0.0
613,944 + CSW01_17590 0.31 -0.3
613,974 + CSW01_17590 0.36 +0.1
614,045 + CSW01_17590 0.48 -0.6
614,208 + CSW01_17590 0.77 -0.7
614,208 + CSW01_17590 0.77 +0.2
614,208 + CSW01_17590 0.77 +1.2
614,216 - CSW01_17590 0.78 -0.3
614,223 + CSW01_17590 0.79 +0.1
614,226 - CSW01_17590 0.80 -0.2
614,324 + -0.1
614,382 + CSW01_17595 0.22 +0.1
614,553 + +0.3
614,553 + +0.4
614,553 + -0.2
614,561 - +0.5
614,561 - +0.5
614,561 - +0.5
614,696 - CSW01_17600 0.13 +0.5
614,881 - CSW01_17600 0.27 +0.1
614,929 + CSW01_17600 0.31 +0.4
614,929 + CSW01_17600 0.31 -0.6
614,929 + CSW01_17600 0.31 +0.7
614,937 - CSW01_17600 0.32 -0.1
614,937 - CSW01_17600 0.32 -1.4
614,937 - CSW01_17600 0.32 +1.1
614,937 - CSW01_17600 0.32 +0.8
614,945 - CSW01_17600 0.32 +0.0
615,004 + CSW01_17600 0.37 +0.4
615,031 - CSW01_17600 0.39 -0.8
615,135 - CSW01_17600 0.47 +0.0
615,214 + CSW01_17600 0.53 +1.6
615,224 + CSW01_17600 0.54 +0.0
615,248 - CSW01_17600 0.56 +0.8
615,360 - CSW01_17600 0.64 +0.2
615,365 - CSW01_17600 0.65 +0.3
615,512 + CSW01_17600 0.76 +1.2
615,586 - CSW01_17600 0.82 -0.1
615,602 + CSW01_17600 0.83 -1.0
615,602 + CSW01_17600 0.83 -0.2
615,611 - CSW01_17600 0.84 +0.3
615,666 + CSW01_17600 0.88 -0.6
615,714 - +0.2
615,800 + +0.4
615,808 - +0.9
615,808 - -0.9
615,853 + -0.1
615,861 - -0.6
615,861 - -0.0
615,875 + +0.1
615,893 + +0.7
615,997 + -0.6
616,028 + -0.7
616,038 + -0.9
616,038 + +0.5
616,061 - CSW01_17605 0.13 +0.0
616,095 + CSW01_17605 0.19 +0.7
616,105 - CSW01_17605 0.20 +0.0
616,268 - CSW01_17605 0.46 -1.4
616,424 + CSW01_17605 0.71 -2.1
616,483 + CSW01_17605 0.80 -0.4
616,535 + CSW01_17605 0.89 -0.2
616,535 + CSW01_17605 0.89 -0.8
616,568 + +1.3
616,573 + +0.5
616,643 + +0.2
616,651 + +0.6
616,654 - +0.5
616,659 - +0.5
616,731 + +0.2
616,731 + -0.1
616,731 + +0.5
616,739 - -0.0
616,809 + CSW01_17610 0.13 +1.2

Or see this region's nucleotide sequence