Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17410

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17405 and CSW01_17410 are separated by 109 nucleotidesCSW01_17410 and CSW01_17415 are separated by 4 nucleotidesCSW01_17415 and CSW01_17420 are separated by 16 nucleotidesCSW01_17420 and CSW01_17425 are separated by 154 nucleotides CSW01_17405: CSW01_17405 - efflux RND transporter periplasmic adaptor subunit, at 574,033 to 575,037 _17405 CSW01_17410: CSW01_17410 - transporter, at 575,147 to 575,611 _17410 CSW01_17415: CSW01_17415 - hypothetical protein, at 575,616 to 576,035 _17415 CSW01_17420: CSW01_17420 - transcriptional regulator, at 576,052 to 576,369 _17420 CSW01_17425: CSW01_17425 - DUF2892 domain-containing protein, at 576,524 to 576,709 _17425 Position (kb) 575 576Strain fitness (log2 ratio) -1 0 1 2at 574.180 kb on + strand, within CSW01_17405at 574.192 kb on + strand, within CSW01_17405at 574.192 kb on + strand, within CSW01_17405at 574.192 kb on + strand, within CSW01_17405at 574.192 kb on + strand, within CSW01_17405at 574.192 kb on + strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.200 kb on - strand, within CSW01_17405at 574.207 kb on + strand, within CSW01_17405at 574.220 kb on - strand, within CSW01_17405at 574.241 kb on - strand, within CSW01_17405at 574.307 kb on + strand, within CSW01_17405at 574.361 kb on + strand, within CSW01_17405at 574.369 kb on - strand, within CSW01_17405at 574.430 kb on - strand, within CSW01_17405at 574.497 kb on + strand, within CSW01_17405at 574.505 kb on + strand, within CSW01_17405at 574.525 kb on + strand, within CSW01_17405at 574.538 kb on - strand, within CSW01_17405at 574.538 kb on - strand, within CSW01_17405at 574.553 kb on - strand, within CSW01_17405at 574.563 kb on + strand, within CSW01_17405at 574.607 kb on + strand, within CSW01_17405at 574.703 kb on + strand, within CSW01_17405at 574.711 kb on - strand, within CSW01_17405at 574.863 kb on + strand, within CSW01_17405at 574.871 kb on - strand, within CSW01_17405at 574.903 kb on + strand, within CSW01_17405at 574.905 kb on + strand, within CSW01_17405at 574.913 kb on - strand, within CSW01_17405at 574.913 kb on - strand, within CSW01_17405at 574.913 kb on - strand, within CSW01_17405at 574.913 kb on - strand, within CSW01_17405at 574.980 kb on - strandat 575.110 kb on - strandat 575.126 kb on - strandat 575.136 kb on - strandat 575.394 kb on + strand, within CSW01_17410at 575.402 kb on - strand, within CSW01_17410at 575.476 kb on + strand, within CSW01_17410at 575.484 kb on - strand, within CSW01_17410at 575.632 kb on - strandat 575.634 kb on + strandat 575.667 kb on + strand, within CSW01_17415at 575.774 kb on - strand, within CSW01_17415at 575.809 kb on - strand, within CSW01_17415at 575.827 kb on - strand, within CSW01_17415at 575.834 kb on + strand, within CSW01_17415at 575.835 kb on - strand, within CSW01_17415at 575.842 kb on - strand, within CSW01_17415at 575.842 kb on - strand, within CSW01_17415at 575.842 kb on - strand, within CSW01_17415at 575.844 kb on + strand, within CSW01_17415at 575.844 kb on + strand, within CSW01_17415at 575.844 kb on + strand, within CSW01_17415at 575.985 kb on - strand, within CSW01_17415at 576.001 kb on - strandat 576.121 kb on - strand, within CSW01_17420at 576.171 kb on + strand, within CSW01_17420at 576.171 kb on + strand, within CSW01_17420at 576.171 kb on + strand, within CSW01_17420at 576.171 kb on + strand, within CSW01_17420at 576.179 kb on - strand, within CSW01_17420at 576.179 kb on - strand, within CSW01_17420at 576.179 kb on - strand, within CSW01_17420at 576.212 kb on - strand, within CSW01_17420at 576.222 kb on - strand, within CSW01_17420at 576.225 kb on + strand, within CSW01_17420at 576.251 kb on + strand, within CSW01_17420at 576.556 kb on - strand, within CSW01_17425at 576.566 kb on + strand, within CSW01_17425at 576.574 kb on - strand, within CSW01_17425at 576.579 kb on - strand, within CSW01_17425

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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574,180 + CSW01_17405 0.15 +0.3
574,192 + CSW01_17405 0.16 -1.1
574,192 + CSW01_17405 0.16 +0.0
574,192 + CSW01_17405 0.16 +0.1
574,192 + CSW01_17405 0.16 +0.5
574,192 + CSW01_17405 0.16 +0.7
574,200 - CSW01_17405 0.17 -0.3
574,200 - CSW01_17405 0.17 +2.0
574,200 - CSW01_17405 0.17 +0.4
574,200 - CSW01_17405 0.17 -0.5
574,200 - CSW01_17405 0.17 -0.6
574,200 - CSW01_17405 0.17 +1.1
574,200 - CSW01_17405 0.17 +0.2
574,200 - CSW01_17405 0.17 -0.6
574,200 - CSW01_17405 0.17 +0.3
574,207 + CSW01_17405 0.17 +0.1
574,220 - CSW01_17405 0.19 +0.4
574,241 - CSW01_17405 0.21 -0.1
574,307 + CSW01_17405 0.27 -0.1
574,361 + CSW01_17405 0.33 +1.0
574,369 - CSW01_17405 0.33 +0.1
574,430 - CSW01_17405 0.40 -0.0
574,497 + CSW01_17405 0.46 +0.1
574,505 + CSW01_17405 0.47 +0.8
574,525 + CSW01_17405 0.49 -0.3
574,538 - CSW01_17405 0.50 -1.1
574,538 - CSW01_17405 0.50 +0.2
574,553 - CSW01_17405 0.52 +0.5
574,563 + CSW01_17405 0.53 +0.1
574,607 + CSW01_17405 0.57 -0.1
574,703 + CSW01_17405 0.67 -0.3
574,711 - CSW01_17405 0.67 -0.5
574,863 + CSW01_17405 0.83 -0.7
574,871 - CSW01_17405 0.83 +0.0
574,903 + CSW01_17405 0.87 +0.5
574,905 + CSW01_17405 0.87 -0.0
574,913 - CSW01_17405 0.88 -0.5
574,913 - CSW01_17405 0.88 +0.6
574,913 - CSW01_17405 0.88 -0.0
574,913 - CSW01_17405 0.88 +0.4
574,980 - -0.2
575,110 - +0.5
575,126 - -0.0
575,136 - -1.0
575,394 + CSW01_17410 0.53 +0.0
575,402 - CSW01_17410 0.55 -0.1
575,476 + CSW01_17410 0.71 -1.2
575,484 - CSW01_17410 0.72 -1.2
575,632 - -0.1
575,634 + -0.8
575,667 + CSW01_17415 0.12 +0.1
575,774 - CSW01_17415 0.38 +0.2
575,809 - CSW01_17415 0.46 -0.8
575,827 - CSW01_17415 0.50 +0.2
575,834 + CSW01_17415 0.52 +0.2
575,835 - CSW01_17415 0.52 -0.4
575,842 - CSW01_17415 0.54 -0.9
575,842 - CSW01_17415 0.54 +0.7
575,842 - CSW01_17415 0.54 -0.2
575,844 + CSW01_17415 0.54 -0.8
575,844 + CSW01_17415 0.54 -1.2
575,844 + CSW01_17415 0.54 -0.6
575,985 - CSW01_17415 0.88 +0.1
576,001 - +0.5
576,121 - CSW01_17420 0.22 +0.1
576,171 + CSW01_17420 0.37 -0.5
576,171 + CSW01_17420 0.37 +1.0
576,171 + CSW01_17420 0.37 -0.9
576,171 + CSW01_17420 0.37 +0.4
576,179 - CSW01_17420 0.40 -0.2
576,179 - CSW01_17420 0.40 +0.3
576,179 - CSW01_17420 0.40 +0.9
576,212 - CSW01_17420 0.50 +1.4
576,222 - CSW01_17420 0.53 +0.9
576,225 + CSW01_17420 0.54 -1.0
576,251 + CSW01_17420 0.63 -0.4
576,556 - CSW01_17425 0.17 -0.5
576,566 + CSW01_17425 0.23 +0.1
576,574 - CSW01_17425 0.27 -0.2
576,579 - CSW01_17425 0.30 +0.1

Or see this region's nucleotide sequence