Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17370

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17360 and CSW01_17365 are separated by 32 nucleotidesCSW01_17365 and CSW01_17370 are separated by 39 nucleotidesCSW01_17370 and CSW01_17375 are separated by 191 nucleotidesCSW01_17375 and CSW01_17380 are separated by 9 nucleotides CSW01_17360: CSW01_17360 - GNAT family acetyltransferase, at 566,458 to 566,973 _17360 CSW01_17365: CSW01_17365 - DNA mismatch repair protein MutT, at 567,006 to 567,455 _17365 CSW01_17370: CSW01_17370 - hypothetical protein, at 567,495 to 567,845 _17370 CSW01_17375: CSW01_17375 - SAM-dependent methyltransferase, at 568,037 to 568,762 _17375 CSW01_17380: CSW01_17380 - LysR family transcriptional regulator, at 568,772 to 569,713 _17380 Position (kb) 567 568Strain fitness (log2 ratio) -2 -1 0 1at 566.670 kb on + strand, within CSW01_17360at 566.726 kb on - strand, within CSW01_17360at 566.811 kb on + strand, within CSW01_17360at 566.811 kb on + strand, within CSW01_17360at 566.819 kb on - strand, within CSW01_17360at 566.819 kb on - strand, within CSW01_17360at 567.011 kb on + strandat 567.019 kb on - strandat 567.144 kb on - strand, within CSW01_17365at 567.155 kb on + strand, within CSW01_17365at 567.160 kb on - strand, within CSW01_17365at 567.162 kb on - strand, within CSW01_17365at 567.209 kb on + strand, within CSW01_17365at 567.217 kb on - strand, within CSW01_17365at 567.217 kb on - strand, within CSW01_17365at 567.276 kb on + strand, within CSW01_17365at 567.378 kb on - strand, within CSW01_17365at 567.464 kb on + strandat 567.464 kb on + strandat 567.517 kb on - strandat 567.568 kb on + strand, within CSW01_17370at 567.568 kb on + strand, within CSW01_17370at 567.568 kb on + strand, within CSW01_17370at 567.646 kb on + strand, within CSW01_17370at 567.654 kb on - strand, within CSW01_17370at 567.673 kb on - strand, within CSW01_17370at 567.803 kb on - strand, within CSW01_17370at 567.876 kb on - strandat 568.075 kb on + strandat 568.131 kb on + strand, within CSW01_17375at 568.131 kb on + strand, within CSW01_17375at 568.164 kb on - strand, within CSW01_17375at 568.164 kb on - strand, within CSW01_17375at 568.243 kb on + strand, within CSW01_17375at 568.269 kb on + strand, within CSW01_17375at 568.269 kb on + strand, within CSW01_17375at 568.269 kb on + strand, within CSW01_17375at 568.277 kb on - strand, within CSW01_17375at 568.277 kb on - strand, within CSW01_17375at 568.277 kb on - strand, within CSW01_17375at 568.277 kb on - strand, within CSW01_17375at 568.277 kb on - strand, within CSW01_17375at 568.290 kb on - strand, within CSW01_17375at 568.396 kb on - strand, within CSW01_17375at 568.426 kb on + strand, within CSW01_17375at 568.426 kb on + strand, within CSW01_17375at 568.426 kb on + strand, within CSW01_17375at 568.426 kb on + strand, within CSW01_17375at 568.428 kb on + strand, within CSW01_17375at 568.428 kb on + strand, within CSW01_17375at 568.428 kb on + strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.434 kb on - strand, within CSW01_17375at 568.436 kb on - strand, within CSW01_17375at 568.436 kb on - strand, within CSW01_17375at 568.468 kb on + strand, within CSW01_17375at 568.476 kb on - strand, within CSW01_17375at 568.546 kb on + strand, within CSW01_17375at 568.547 kb on - strand, within CSW01_17375at 568.551 kb on + strand, within CSW01_17375at 568.558 kb on + strand, within CSW01_17375at 568.582 kb on + strand, within CSW01_17375at 568.624 kb on + strand, within CSW01_17375at 568.624 kb on + strand, within CSW01_17375at 568.624 kb on + strand, within CSW01_17375at 568.688 kb on + strand, within CSW01_17375at 568.733 kb on + strandat 568.751 kb on - strandat 568.845 kb on + strandat 568.845 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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566,670 + CSW01_17360 0.41 +1.4
566,726 - CSW01_17360 0.52 +0.5
566,811 + CSW01_17360 0.68 -0.4
566,811 + CSW01_17360 0.68 -0.8
566,819 - CSW01_17360 0.70 +0.4
566,819 - CSW01_17360 0.70 -0.3
567,011 + -0.4
567,019 - -0.3
567,144 - CSW01_17365 0.31 +0.0
567,155 + CSW01_17365 0.33 +0.3
567,160 - CSW01_17365 0.34 -0.5
567,162 - CSW01_17365 0.35 -0.7
567,209 + CSW01_17365 0.45 -0.4
567,217 - CSW01_17365 0.47 -0.9
567,217 - CSW01_17365 0.47 +0.4
567,276 + CSW01_17365 0.60 +1.2
567,378 - CSW01_17365 0.83 -0.0
567,464 + +0.1
567,464 + -0.1
567,517 - -2.3
567,568 + CSW01_17370 0.21 -1.2
567,568 + CSW01_17370 0.21 -1.5
567,568 + CSW01_17370 0.21 -0.4
567,646 + CSW01_17370 0.43 -1.7
567,654 - CSW01_17370 0.45 -0.6
567,673 - CSW01_17370 0.51 -0.8
567,803 - CSW01_17370 0.88 +0.0
567,876 - +0.4
568,075 + +0.7
568,131 + CSW01_17375 0.13 -2.3
568,131 + CSW01_17375 0.13 +0.0
568,164 - CSW01_17375 0.17 -0.5
568,164 - CSW01_17375 0.17 -0.1
568,243 + CSW01_17375 0.28 +1.0
568,269 + CSW01_17375 0.32 -0.8
568,269 + CSW01_17375 0.32 +1.2
568,269 + CSW01_17375 0.32 +0.0
568,277 - CSW01_17375 0.33 +0.5
568,277 - CSW01_17375 0.33 -1.0
568,277 - CSW01_17375 0.33 +0.5
568,277 - CSW01_17375 0.33 -0.3
568,277 - CSW01_17375 0.33 -1.0
568,290 - CSW01_17375 0.35 -0.5
568,396 - CSW01_17375 0.49 +0.4
568,426 + CSW01_17375 0.54 -0.1
568,426 + CSW01_17375 0.54 +1.2
568,426 + CSW01_17375 0.54 +0.8
568,426 + CSW01_17375 0.54 +1.2
568,428 + CSW01_17375 0.54 -0.5
568,428 + CSW01_17375 0.54 -0.1
568,428 + CSW01_17375 0.54 -0.5
568,434 - CSW01_17375 0.55 +0.5
568,434 - CSW01_17375 0.55 +0.6
568,434 - CSW01_17375 0.55 -0.6
568,434 - CSW01_17375 0.55 -1.0
568,434 - CSW01_17375 0.55 +0.5
568,434 - CSW01_17375 0.55 -0.5
568,434 - CSW01_17375 0.55 -1.0
568,434 - CSW01_17375 0.55 +0.2
568,436 - CSW01_17375 0.55 +0.5
568,436 - CSW01_17375 0.55 +0.0
568,468 + CSW01_17375 0.59 +1.5
568,476 - CSW01_17375 0.60 +0.9
568,546 + CSW01_17375 0.70 +1.0
568,547 - CSW01_17375 0.70 +0.7
568,551 + CSW01_17375 0.71 -2.2
568,558 + CSW01_17375 0.72 +0.2
568,582 + CSW01_17375 0.75 +0.2
568,624 + CSW01_17375 0.81 -0.8
568,624 + CSW01_17375 0.81 -0.5
568,624 + CSW01_17375 0.81 -0.2
568,688 + CSW01_17375 0.90 +0.0
568,733 + +1.7
568,751 - +0.1
568,845 + +1.3
568,845 + -0.5

Or see this region's nucleotide sequence