Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17350

Experiment: LB_Aerobic_PHAGE INFX20MPI_ZN6A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17345 and CSW01_17350 are separated by 270 nucleotidesCSW01_17350 and CSW01_17355 are separated by 12 nucleotidesCSW01_17355 and CSW01_17360 are separated by 15 nucleotides CSW01_17345: CSW01_17345 - prepilin peptidase, at 561,973 to 564,147 _17345 CSW01_17350: CSW01_17350 - AbrB family transcriptional regulator, at 564,418 to 565,458 _17350 CSW01_17355: CSW01_17355 - D-3-phosphoglycerate dehydrogenase, at 565,471 to 566,442 _17355 CSW01_17360: CSW01_17360 - GNAT family acetyltransferase, at 566,458 to 566,973 _17360 Position (kb) 564 565 566Strain fitness (log2 ratio) -2 -1 0 1 2 3at 563.432 kb on + strand, within CSW01_17345at 563.486 kb on - strand, within CSW01_17345at 563.522 kb on - strand, within CSW01_17345at 563.527 kb on + strand, within CSW01_17345at 563.527 kb on + strand, within CSW01_17345at 563.535 kb on - strand, within CSW01_17345at 563.547 kb on + strand, within CSW01_17345at 563.547 kb on + strand, within CSW01_17345at 563.555 kb on - strand, within CSW01_17345at 563.557 kb on + strand, within CSW01_17345at 563.628 kb on + strand, within CSW01_17345at 563.634 kb on - strand, within CSW01_17345at 563.635 kb on - strand, within CSW01_17345at 563.658 kb on - strand, within CSW01_17345at 563.731 kb on + strand, within CSW01_17345at 563.731 kb on + strand, within CSW01_17345at 563.739 kb on - strand, within CSW01_17345at 563.739 kb on - strand, within CSW01_17345at 563.794 kb on + strand, within CSW01_17345at 563.794 kb on + strand, within CSW01_17345at 563.804 kb on + strand, within CSW01_17345at 563.804 kb on + strand, within CSW01_17345at 563.804 kb on + strand, within CSW01_17345at 563.804 kb on - strand, within CSW01_17345at 563.810 kb on + strand, within CSW01_17345at 563.812 kb on - strand, within CSW01_17345at 563.812 kb on - strand, within CSW01_17345at 563.858 kb on - strand, within CSW01_17345at 563.868 kb on - strand, within CSW01_17345at 563.877 kb on + strand, within CSW01_17345at 563.953 kb on + strandat 563.961 kb on - strandat 563.963 kb on - strandat 564.121 kb on + strandat 564.123 kb on + strandat 564.123 kb on + strandat 564.131 kb on - strandat 564.131 kb on - strandat 564.143 kb on + strandat 564.151 kb on - strandat 564.167 kb on + strandat 564.182 kb on + strandat 564.182 kb on + strandat 564.182 kb on + strandat 564.182 kb on + strandat 564.182 kb on + strandat 564.190 kb on - strandat 564.228 kb on + strandat 564.246 kb on - strandat 564.251 kb on + strandat 564.275 kb on - strandat 564.282 kb on - strandat 564.318 kb on - strandat 564.340 kb on + strandat 564.347 kb on - strandat 564.367 kb on + strandat 564.367 kb on + strandat 564.367 kb on + strandat 564.367 kb on + strandat 564.367 kb on + strandat 564.367 kb on + strandat 564.367 kb on + strandat 564.367 kb on + strandat 564.375 kb on - strandat 564.375 kb on - strandat 564.375 kb on - strandat 564.375 kb on - strandat 564.388 kb on - strandat 564.421 kb on - strandat 564.467 kb on + strandat 564.511 kb on + strandat 564.519 kb on - strandat 564.552 kb on + strand, within CSW01_17350at 564.562 kb on + strand, within CSW01_17350at 564.692 kb on + strand, within CSW01_17350at 564.692 kb on + strand, within CSW01_17350at 564.700 kb on - strand, within CSW01_17350at 564.702 kb on + strand, within CSW01_17350at 564.710 kb on - strand, within CSW01_17350at 564.717 kb on + strand, within CSW01_17350at 564.838 kb on + strand, within CSW01_17350at 564.872 kb on + strand, within CSW01_17350at 564.880 kb on - strand, within CSW01_17350at 564.882 kb on + strand, within CSW01_17350at 565.022 kb on + strand, within CSW01_17350at 565.029 kb on - strand, within CSW01_17350at 565.100 kb on - strand, within CSW01_17350at 565.127 kb on - strand, within CSW01_17350at 565.170 kb on + strand, within CSW01_17350at 565.170 kb on + strand, within CSW01_17350at 565.206 kb on + strand, within CSW01_17350at 565.207 kb on + strand, within CSW01_17350at 565.207 kb on + strand, within CSW01_17350at 565.207 kb on + strand, within CSW01_17350at 565.207 kb on + strand, within CSW01_17350at 565.207 kb on + strand, within CSW01_17350at 565.207 kb on + strand, within CSW01_17350at 565.207 kb on + strand, within CSW01_17350at 565.207 kb on + strand, within CSW01_17350at 565.207 kb on + strand, within CSW01_17350at 565.215 kb on - strand, within CSW01_17350at 565.215 kb on - strand, within CSW01_17350at 565.215 kb on - strand, within CSW01_17350at 565.215 kb on - strand, within CSW01_17350at 565.215 kb on - strand, within CSW01_17350at 565.215 kb on - strand, within CSW01_17350at 565.215 kb on - strand, within CSW01_17350at 565.215 kb on - strand, within CSW01_17350at 565.215 kb on - strand, within CSW01_17350at 565.215 kb on - strand, within CSW01_17350at 565.215 kb on - strand, within CSW01_17350at 565.456 kb on - strandat 565.477 kb on - strandat 565.522 kb on - strandat 565.522 kb on - strandat 565.654 kb on + strand, within CSW01_17355at 565.656 kb on + strand, within CSW01_17355at 565.664 kb on - strand, within CSW01_17355at 565.668 kb on - strand, within CSW01_17355at 565.687 kb on - strand, within CSW01_17355at 565.692 kb on + strand, within CSW01_17355at 565.702 kb on - strand, within CSW01_17355at 566.017 kb on - strand, within CSW01_17355at 566.020 kb on + strand, within CSW01_17355at 566.028 kb on - strand, within CSW01_17355at 566.057 kb on + strand, within CSW01_17355at 566.057 kb on + strand, within CSW01_17355at 566.065 kb on - strand, within CSW01_17355at 566.104 kb on + strand, within CSW01_17355at 566.111 kb on - strand, within CSW01_17355at 566.112 kb on - strand, within CSW01_17355at 566.174 kb on + strand, within CSW01_17355at 566.182 kb on - strand, within CSW01_17355at 566.182 kb on - strand, within CSW01_17355at 566.184 kb on + strand, within CSW01_17355at 566.265 kb on + strand, within CSW01_17355at 566.284 kb on + strand, within CSW01_17355

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Aerobic_PHAGE INFX20MPI_ZN6A
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563,432 + CSW01_17345 0.67 -0.1
563,486 - CSW01_17345 0.70 +0.7
563,522 - CSW01_17345 0.71 -0.5
563,527 + CSW01_17345 0.71 +0.5
563,527 + CSW01_17345 0.71 -0.0
563,535 - CSW01_17345 0.72 -1.0
563,547 + CSW01_17345 0.72 +2.1
563,547 + CSW01_17345 0.72 +0.3
563,555 - CSW01_17345 0.73 -2.3
563,557 + CSW01_17345 0.73 +0.9
563,628 + CSW01_17345 0.76 +0.2
563,634 - CSW01_17345 0.76 -0.7
563,635 - CSW01_17345 0.76 -1.0
563,658 - CSW01_17345 0.77 -1.3
563,731 + CSW01_17345 0.81 -0.4
563,731 + CSW01_17345 0.81 -0.1
563,739 - CSW01_17345 0.81 -0.7
563,739 - CSW01_17345 0.81 +0.9
563,794 + CSW01_17345 0.84 -1.8
563,794 + CSW01_17345 0.84 +0.9
563,804 + CSW01_17345 0.84 -1.8
563,804 + CSW01_17345 0.84 +2.2
563,804 + CSW01_17345 0.84 -0.7
563,804 - CSW01_17345 0.84 +1.2
563,810 + CSW01_17345 0.84 -1.9
563,812 - CSW01_17345 0.85 +0.6
563,812 - CSW01_17345 0.85 +0.7
563,858 - CSW01_17345 0.87 +1.5
563,868 - CSW01_17345 0.87 +0.0
563,877 + CSW01_17345 0.88 +0.0
563,953 + -1.3
563,961 - +0.0
563,963 - -0.5
564,121 + +1.0
564,123 + +1.0
564,123 + -0.6
564,131 - +0.0
564,131 - -2.4
564,143 + -0.1
564,151 - -1.1
564,167 + +0.3
564,182 + +0.5
564,182 + -1.6
564,182 + +1.0
564,182 + -2.2
564,182 + +1.0
564,190 - -0.8
564,228 + -0.9
564,246 - -0.2
564,251 + +1.0
564,275 - +0.2
564,282 - +0.7
564,318 - +0.0
564,340 + +0.3
564,347 - -0.4
564,367 + -0.7
564,367 + +0.0
564,367 + -0.7
564,367 + +0.0
564,367 + -0.5
564,367 + +0.8
564,367 + +0.0
564,367 + -1.4
564,375 - -0.2
564,375 - -0.7
564,375 - +0.1
564,375 - -0.4
564,388 - -0.4
564,421 - +0.0
564,467 + -0.4
564,511 + +0.6
564,519 - +0.2
564,552 + CSW01_17350 0.13 +0.0
564,562 + CSW01_17350 0.14 -0.4
564,692 + CSW01_17350 0.26 +0.0
564,692 + CSW01_17350 0.26 -0.7
564,700 - CSW01_17350 0.27 +0.6
564,702 + CSW01_17350 0.27 -0.4
564,710 - CSW01_17350 0.28 +0.5
564,717 + CSW01_17350 0.29 +0.1
564,838 + CSW01_17350 0.40 +1.3
564,872 + CSW01_17350 0.44 +0.3
564,880 - CSW01_17350 0.44 -0.3
564,882 + CSW01_17350 0.45 -0.4
565,022 + CSW01_17350 0.58 +0.9
565,029 - CSW01_17350 0.59 +1.6
565,100 - CSW01_17350 0.66 +0.8
565,127 - CSW01_17350 0.68 +2.1
565,170 + CSW01_17350 0.72 -0.2
565,170 + CSW01_17350 0.72 +0.4
565,206 + CSW01_17350 0.76 -0.3
565,207 + CSW01_17350 0.76 -2.0
565,207 + CSW01_17350 0.76 +1.2
565,207 + CSW01_17350 0.76 +2.8
565,207 + CSW01_17350 0.76 -0.1
565,207 + CSW01_17350 0.76 +0.2
565,207 + CSW01_17350 0.76 -0.3
565,207 + CSW01_17350 0.76 +0.0
565,207 + CSW01_17350 0.76 +0.3
565,207 + CSW01_17350 0.76 -0.4
565,215 - CSW01_17350 0.77 +1.2
565,215 - CSW01_17350 0.77 -0.2
565,215 - CSW01_17350 0.77 +0.5
565,215 - CSW01_17350 0.77 +0.2
565,215 - CSW01_17350 0.77 +0.3
565,215 - CSW01_17350 0.77 +0.9
565,215 - CSW01_17350 0.77 +0.4
565,215 - CSW01_17350 0.77 -0.4
565,215 - CSW01_17350 0.77 -0.5
565,215 - CSW01_17350 0.77 -1.4
565,215 - CSW01_17350 0.77 -0.1
565,456 - +0.3
565,477 - -0.1
565,522 - +2.0
565,522 - -0.3
565,654 + CSW01_17355 0.19 -0.2
565,656 + CSW01_17355 0.19 -2.3
565,664 - CSW01_17355 0.20 +1.2
565,668 - CSW01_17355 0.20 +0.4
565,687 - CSW01_17355 0.22 +0.1
565,692 + CSW01_17355 0.23 -1.4
565,702 - CSW01_17355 0.24 -1.3
566,017 - CSW01_17355 0.56 -0.2
566,020 + CSW01_17355 0.56 +0.5
566,028 - CSW01_17355 0.57 -0.2
566,057 + CSW01_17355 0.60 -0.4
566,057 + CSW01_17355 0.60 -0.2
566,065 - CSW01_17355 0.61 -0.5
566,104 + CSW01_17355 0.65 -0.4
566,111 - CSW01_17355 0.66 -0.4
566,112 - CSW01_17355 0.66 -0.3
566,174 + CSW01_17355 0.72 -0.7
566,182 - CSW01_17355 0.73 +0.6
566,182 - CSW01_17355 0.73 +0.1
566,184 + CSW01_17355 0.73 +0.8
566,265 + CSW01_17355 0.82 +0.2
566,284 + CSW01_17355 0.84 +0.0

Or see this region's nucleotide sequence